Fwd: Special Seminar of Interest: Sharing Genomic Data: NIH Data Sharing Policies Past, Present Future

2011-04-15 Thread Mathieu Malaterre
-- Forwarded message -- From: Rossoshek, Anna (NIH/NHGRI) [E] asir...@mail.nih.gov Date: Wed, Apr 13, 2011 at 2:18 PM Subject: Special Seminar of Interest: Sharing Genomic Data: NIH Data Sharing Policies Past, Present Future To: nhgribulleti...@list.nih.gov iDASH Webinar Series

SeaView license

2011-04-15 Thread Andreas Tille
Hi, I had some look into the seaview license. It seems to me that the only reason why seaview is non-free are those two source files from phylip (dnapars.c and protpars.c) which are included. If this is right and I did not overlooked any further non-free pieces, did anybody just asked the

Hilda un Galina vēlas tevi un tavus čomus!

2011-04-15 Thread Gunta
Latvijas sirds - Rīgas - centrā ir atvēries zolīds džentelmeņu klubs - Ēden! Tavām pikantajām rotaļām ir pieejami 6, īpaši iekārtoti, stāvi! Atpūtas kompleksa otrajā stāvā Tu vari saņemt fantastisku masāžu, lielisku un seksīgu meiteiņu izpildījumā, pārējā Ēkas daļā: baudiet gardus dzērienus,

genome annotation program to add to list

2011-04-15 Thread George Marselis
http://www.yandell-lab.org/software/maker.html with how-to here: http://gmod.org/wiki/MAKER_Tutorial#Installation how are you guys doing? :D just came back from london. i have to say: god bless the Queen for allowing her subjects to create such a diverse line of beers! -- To UNSUBSCRIBE,

Fwd: Ginkgo CADx 2.4.0.0 released

2011-04-15 Thread Sebastian Hilbert
FYI -- Weitergeleitete Nachricht -- Betreff: Ginkgo CADx 2.4.0.0 released Datum: Freitag, 15. April 2011, 19:14:48 Hi. We have just released Ginkgo CADx 2.4.0.0. It comes with a first in deep internal refactorization focused in break binary libraries dependencies. The source

Re: genome annotation program to add to list

2011-04-15 Thread Andreas Tille
Hi George, On Fri, Apr 15, 2011 at 08:26:48PM +0100, George Marselis wrote: http://www.yandell-lab.org/software/maker.html dded - thanks for the hint. how are you guys doing? Fine. I hope you as well. You did not answered my question whether you need help with arachne and I have not

Re: Fwd: Ginkgo CADx 2.4.0.0 released

2011-04-15 Thread Andreas Tille
Hi Sebastian, On Fri, Apr 15, 2011 at 09:44:38PM +0200, Sebastian Hilbert wrote: -- Weitergeleitete Nachricht -- Betreff: Ginkgo CADx 2.4.0.0 released Datum: Freitag, 15. April 2011, 19:14:48 Hi. We have just released Ginkgo CADx 2.4.0.0. It comes with a first in deep

Re: genome annotation program to add to list

2011-04-15 Thread George Marselis
Fine.  I hope you as well.  You did not answered my question whether you need help with arachne and I have not noticed any commit. Kind regards My apologies, I was in vacation and I was not reading my emails. No, I have not done anything with arachne. I came back last night and I just woke

question about packaging nonfree software

2011-04-15 Thread George Marselis
Hey guys, As you all know, a lot of bioinformatics programs come in nonfree packaging. Newbler comes easily to mind. What is the policy for including software in debian-med? I mean, free software uber alles, yes, but some people will just not release the software under the gpl. what then? For

please add this Nucleic Acid Parser to the list

2011-04-15 Thread George Marselis
It is off the page of Dr ian Korf at UC Davis Genome Center. http://homepage.mac.com/iankorf/ He is one of the Authors of the O'Reilly BLAST book http://homepage.mac.com/iankorf/snap-2010-07-28.tar.gz the program is under GPL 2 -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org

Question about packages requiring slightly modified versions of programs.

2011-04-15 Thread George Marselis
Hey guys, Apparently, repeat masker comes with its own version of Blast: http://www.repeatmasker.org/RMBlast.html they say that RMBlast is a RepeatMasker compatible version of the standard NCBI BLAST suite. The primary difference between this distribution and the NCBI distribution is the

one gene prediction program for the task list

2011-04-15 Thread George Marselis
http://augustus.gobics.de/ -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/banlktim0fu5b+acu9to87cq+z0pe0w4...@mail.gmail.com

please add genemark in task list

2011-04-15 Thread George Marselis
http://exon.biology.gatech.edu/ for general description http://exon.biology.gatech.edu/license_download.cgi to download the binaries -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org Archive:

Re: genome annotation program to add to list

2011-04-15 Thread Charles Plessy
Le Fri, Apr 15, 2011 at 08:26:48PM +0100, George Marselis a écrit : http://www.yandell-lab.org/software/maker.html with how-to here: http://gmod.org/wiki/MAKER_Tutorial#Installation how are you guys doing? :D just came back from london. i have to say: god bless the Queen for allowing her

Re: question about packaging nonfree software

2011-04-15 Thread Yaroslav Halchenko
Hi George, I bet higher authorities of debian-med would chime in later on, but let me comment on: nonfree != non-free ;) i.e. depending on what is non free in newbler it might or might not be even considered for upload into non-free (not officially supported by Debian) suite of Debian. To