Re: Need some help for Java package

2014-02-10 Thread Andreas Tille
Hi Olivier, On Mon, Feb 10, 2014 at 10:01:33AM +0100, Olivier Sallou wrote: ok, I found that several things were missing. I have updated build.xml and added d/ipig.jlibs (to install generated jar to /usr/share/java). What could be missing is a main ipig program in /usr/bin doing a:

Aw: Re: Next sprint proposal

2014-02-10 Thread Steffen Möller
Gesendet: Sonntag, 09. Februar 2014 um 18:31 Uhr Von: Sascha Steinbiss sa...@tetrinetsucht.de An: Tony Travis tony.tra...@minke-informatics.co.uk, olivier.sal...@codeless.fr olivier.sal...@codeless.fr, Tim Booth tbo...@ceh.ac.uk, Debian Med Project List debian-med@lists.debian.org

Aw: Tasks bio-* are unmaintained

2014-02-10 Thread Steffen Möller
Hi Andreas, bio-cloud bio-ngs bio-pyhlogeny nobody is really maintaining these tasks files. They are only displayed in the web sentinel and no metapackages are created but IMHO we are doing more bad than harm when attracting users to an incomplete web page which is not

Re: Tasks bio-* are unmaintained

2014-02-10 Thread Andreas Tille
Hi Steffen, On Mon, Feb 10, 2014 at 10:14:47AM +0100, Steffen Möller wrote: nobody is really maintaining these tasks files. They are only displayed in the web sentinel and no metapackages are created but IMHO we are doing more bad than harm when attracting users to an incomplete web page

Re: Need some help for Java package

2014-02-10 Thread Olivier Sallou
On 02/10/2014 08:16 AM, olivier.sal...@codeless.fr wrote: On 02/09/2014 12:57 AM, Andreas Tille wrote: Hi, On Sat, Feb 08, 2014 at 06:12:07PM +0100, olivier.sal...@codeless.fr wrote: I found some reference here: http://bioinf.hutton.ac.uk/tablet/svn.txt which belongs to the BSD

Re: Aw: Re: Next sprint proposal

2014-02-10 Thread Tim Booth
Hi Olivier, St. Malo looks perfect. Cheers, TIM ps. I've not forgotten finishing the meeting report - just been really busy all last week. On Mon, 2014-02-10 at 09:11 +, Steffen Möller wrote: Gesendet: Sonntag, 09. Februar 2014 um 18:31 Uhr Von: Sascha Steinbiss

Re: Aw: Re: Next sprint proposal

2014-02-10 Thread Jorge Sebastião Soares
Hi guys, Saint Malo looks great. As long as it doesn't disappear of the map like what's happening to the SW of the UK. Regards, Jorge On Mon, Feb 10, 2014 at 10:28 AM, Tim Booth tbo...@ceh.ac.uk wrote: Hi Olivier, St. Malo looks perfect. Cheers, TIM ps. I've not forgotten finishing

Re: Aw: Re: Next sprint proposal

2014-02-10 Thread Mathieu Malaterre
Nothing too unusual for Brittany: http://www.ouest-france.fr/grande-maree-saint-malo-bien-secouee-mais-pas-de-blesse-1900920 ;-P On Mon, Feb 10, 2014 at 12:13 PM, Jorge Sebastião Soares j.s.soa...@gmail.com wrote: Hi guys, Saint Malo looks great. As long as it doesn't disappear of the map

Re: Need some help for Java package

2014-02-10 Thread Andreas Tille
Hi Olivier, On Mon, Feb 10, 2014 at 11:03:10AM +0100, Olivier Sallou wrote: I asked upstream with a ticket about missing class. They added it in their svn codebase (so not needing to package the whole dependencies for a single class). Great! So you need to reupdate the git codebase

Re: Need some help for Java package

2014-02-10 Thread Olivier Sallou
On 02/10/2014 01:51 PM, Andreas Tille wrote: Hi Olivier, On Mon, Feb 10, 2014 at 11:03:10AM +0100, Olivier Sallou wrote: I asked upstream with a ticket about missing class. They added it in their svn codebase (so not needing to package the whole dependencies for a single class). Great!

Re: Updating fis-gtm package to 6.1

2014-02-10 Thread Karsten Hilbert
On Sun, Feb 09, 2014 at 11:11:27PM +0100, Andreas Tille wrote: The packaging should guarantee that you are able to install different versions of fis-gtm. That's all. You mean, like, in parallel. Yes. That's my argument with the version from Stable PLUS latest released. +

Re: Updating fis-gtm package to 6.1

2014-02-10 Thread Thorsten Alteholz
Hi everybody, the whole project has the systemd-discussion and we discuss about the packaging of fis-gtm :-). So let me ask some questions and I hope they haven't been asked before ... More precisely we are talking about versions: fis-gtm-6.0 (currently in Debian)

Re: Updating fis-gtm package to 6.1

2014-02-10 Thread Karsten Hilbert
On Mon, Feb 10, 2014 at 07:30:06PM +0100, Thorsten Alteholz wrote: More precisely we are talking about versions: fis-gtm-6.0 (currently in Debian) fis-gtm-6.1 (recently released upstream) fis-gtm-6.2 (to be released upstream by mid 2014)

Re: Updating fis-gtm package to 6.1

2014-02-10 Thread Dominique Belhachemi
There is no big difference to all the other packages in Debian. Transitions happen all the time. Just let the latest stable release propagate into testing. Luis is setting up the git packaging infrastructure to make a transition from one release to another release as smooth as possible. We can

Re: Updating fis-gtm package to 6.1

2014-02-10 Thread Luis Ibanez
On Mon, Feb 10, 2014 at 2:38 PM, Dominique Belhachemi domi...@debian.orgwrote: There is no big difference to all the other packages in Debian. Transitions happen all the time. Just let the latest stable release propagate into testing. Luis is setting up the git packaging infrastructure to

Re: Tasks bio-* are unmaintained

2014-02-10 Thread Charles Plessy
Le Mon, Feb 10, 2014 at 10:14:47AM +0100, Steffen Möller a écrit : Hi Andreas, bio-cloud bio-ngs bio-pyhlogeny nobody is really maintaining these tasks files. They are only displayed in the web sentinel and no metapackages are created but IMHO we are doing more bad

Re: should google-glog be ok with libunwind7-dev? [Was: Orthanc 0.7.2 backport of wheezy]

2014-02-10 Thread Yaroslav Halchenko
Thanks to Daigo's -2 of glog with suggested tune up of build-depends, I have uploaded backport build of orthanc for wheezy straight into NeuroDebian wheezy just to give it a try... initial catch was the re-located *.dic files provided by libdcmtk2 (under /usr/share/dcmtk in wheezy and

About pysam

2014-02-10 Thread Charles Plessy
Hi Andreas, I see that you are working on pysam, thank you for this ! If you are wondering why it was never uploaded, it is because of the extensive code duplications with the samtools and tabix packages, which I could not try to resolve because of my lack of understanding on how the C code is

Re: Updating fis-gtm package to 6.1

2014-02-10 Thread Andreas Tille
Hi Luis, On Mon, Feb 10, 2014 at 08:22:01PM -0500, Luis Ibanez wrote: On Mon, Feb 10, 2014 at 2:38 PM, Dominique Belhachemi domi...@debian.orgwrote: There is no big difference to all the other packages in Debian. Transitions happen all the time. Just let the latest stable release