jblas update to 1.2.5?

2021-12-09 Thread tony mancill
Hello Debian Med, jblas (http://jblas.org/) is a Debian Java team package, but I think it is more appropriate to ask about users here. Upstream has released a new version, 1.2.5; Debian currently packages 1.2.4. From the upstream release notes: > Release 1.2.5 - Aug 20, 2020 > > It has been a

Re: Bug#984063: [Debian-med-packaging] Bug#984063: Please lets coordinate itk4/itk5 issues (Was: Bug#984063)

2021-12-09 Thread Adrian Bunk
On Tue, Nov 09, 2021 at 11:34:13PM +0100, Étienne Mollier wrote: > Étienne Mollier, on 2021-11-08: > > I haven't pushed investigations further for the moment. This > > possibly appeared with tiff 4.3.0, and probably got fixed in > > ITKv5 as well. > > Or not, the embedded copy is still libtiff

[Advent bug squashing] #1000814 python-cooler: 10 test failures with pandas 1.3: TypeError: 'IOHandles' object is not subscriptable

2021-12-09 Thread Andreas Tille
No idea why no bug closed message has hit my mailbox - but this one is closed as well with the python-cooler upload. -- http://fam-tille.de

Re: [Advent bug squashing] Bug#979625: marked as done (autopkgtest: ModuleNotFoundError (ipytree) and AssertionError)

2021-12-09 Thread Andreas Tille
Am Thu, Dec 09, 2021 at 03:59:26PM +0530 schrieb Nilesh Patra: > >I think you did not really re-opened the bug (since it was not in CC) - > > Oops, yeah I missed that. Typing emails on phone isn't very optimal as it > seems :) :-) > >so if you want to it should probably not be RC (either

Re: [Advent bug squashing] Bug#979625: marked as done (autopkgtest: ModuleNotFoundError (ipytree) and AssertionError)

2021-12-09 Thread Nilesh Patra
control: reopen -1 control: found -1 python-cooler/0.8.11 control: severity -1 important On 9 December 2021 2:23:11 pm IST, Andreas Tille wrote: >I think you did not really re-opened the bug (since it was not in CC) - Oops, yeah I missed that. Typing emails on phone isn't very optimal as it

please kindly review: r-bioc-fishpond -- Fishpond: differential transcript and gene expression with

2021-12-09 Thread Steffen Möller
Hello this goes out to Andreas in particular, I completed the packaging of r-bioc-fishpond earlier this afternoon. This is a suggestion for r-bioc-tximport with some other interesting reverse-dependencies - and tximport makes problems with my rabbit data that I yet do not understand. The

Re: please kindly review: r-bioc-fishpond -- Fishpond: differential transcript and gene expression with

2021-12-09 Thread Nilesh Patra
Hi Steffen, Long time! :) On Thu, Dec 09, 2021 at 08:32:46PM +0100, Steffen Möller wrote: > Hello this goes out to Andreas in particular, I hope you do not mind me taking over (have a few spare cycles) > I completed the packaging of r-bioc-fishpond earlier this afternoon. > This is a

[Advent bug squashing] Bug#1001410: marked as done (python-csb: (autopkgtest) needs update for python3.10: TypeError: multiple bases have instance lay-out conflict)

2021-12-09 Thread Nilesh Patra
Another python 3.10 bug squash! Regards, Nilesh - Forwarded message from Debian Bug Tracking System - Date: Thu, 09 Dec 2021 22:21:04 + From: Debian Bug Tracking System To: Nilesh Patra Subject: Bug#1001410: marked as done (python-csb: (autopkgtest) needs update for python3.10:

Re: please kindly review: r-bioc-fishpond -- Fishpond: differential transcript and gene expression with

2021-12-09 Thread Andreas Tille
Am Fri, Dec 10, 2021 at 03:07:51AM +0530 schrieb Nilesh Patra: > On Thu, Dec 09, 2021 at 08:32:46PM +0100, Steffen Möller wrote: > > Hello this goes out to Andreas in particular, > > I hope you do not mind me taking over (have a few spare cycles) I definitely encourage everybody to take over

Re: jblas update to 1.2.5?

2021-12-09 Thread Andreas Tille
Hi Tony and Debian Science Am Thu, Dec 09, 2021 at 09:31:31AM -0800 schrieb tony mancill: > Hello Debian Med, > > jblas (http://jblas.org/) is a Debian Java team package, but I think it > is more appropriate to ask about users here. ... well, better Debian Science IMHO (which I'm keeping in the

[Advent bug squashing] (Honor belongs to Nilesh Patra): Bug#965361: marked as done (python-cooler: please make the build reproducible)

2021-12-09 Thread Andreas Tille
This changelog entry is a bit older but finally this bug was closed now as well . [ Nilesh Patra ] * Make Build Reproducible (Closes: #965361) -- http://fam-tille.de

[Advent bug squashing] Bug#979625: marked as done (autopkgtest: ModuleNotFoundError (ipytree) and AssertionError)

2021-12-09 Thread Andreas Tille
Its not the most elegant fix but given that the code contained the ipytree recommends even before but it was just tested now excluding the affected tests seemed to be appropriate. -BEGIN PGP SIGNED MESSAGE- Hash: SHA512 Format: 1.8 Date: Thu, 09 Dec 2021 08:27:41 +0100 Source:

Re: [Advent bug squashing] Bug#979625: marked as done (autopkgtest: ModuleNotFoundError (ipytree) and AssertionError)

2021-12-09 Thread Nilesh Patra
control: reopen -1 control: found -1 python-cooler/0.8.11 On 9 December 2021 1:51:15 pm IST, Andreas Tille wrote: >Its not the most elegant fix but given that the code contained the >ipytree recommends even before but it was just tested now excluding the >affected tests seemed to be appropriate.

Re: [Advent bug squashing] Bug#979625: marked as done (autopkgtest: ModuleNotFoundError (ipytree) and AssertionError)

2021-12-09 Thread Andreas Tille
Hi Nilesh, Am Thu, Dec 09, 2021 at 01:57:56PM +0530 schrieb Nilesh Patra: > control: reopen -1 > control: found -1 python-cooler/0.8.11 > > On 9 December 2021 1:51:15 pm IST, Andreas Tille wrote: > >Its not the most elegant fix but given that the code contained the > >ipytree recommends even