Help Required : Add autopkgtest for atropos

2022-04-04 Thread Mohd Bilal
Hello team, I would like to add autopkgtest for atropos[1] but I'm stuck with some .pyx files that the tests import from. I guess the tests require these C extensions to be built before running the test. I've tried building[2] the extensions using `$py setup.py build_ext --inplace` but it

Re: Help Required : Add autopkgtest for atropos

2022-04-04 Thread Nilesh Patra
On Mon, Apr 04, 2022 at 04:58:53PM -, Mohd Bilal wrote: > I would like to add autopkgtest for atropos[1] but I'm stuck with some .pyx > files that the tests import from. > I guess the tests require these C extensions to be built before running the > test. I've tried building[2] the

Debian Med peer programming

2022-04-04 Thread Andreas Tille
Hi, I'd like to try out a new idea I had to give some support to newcomers. Just have a look at https://salsa.debian.org/med-team/community/MoM/-/wikis/Debian-Med-peer-programming and ping me on the according matrix channel. If someone shows up we can meet in the Jitsi channel and

Re: Help Required : Add autopkgtest for atropos

2022-04-04 Thread Andreas Tille
Am Tue, Apr 05, 2022 at 12:22:37AM +0530 schrieb Nilesh Patra: > On Mon, Apr 04, 2022 at 08:16:07PM +0200, Andreas Tille wrote: > > In general I'd recommend to follow the packaging example of our team: > > > > > >

Re: Help Required : Add autopkgtest for atropos

2022-04-04 Thread Nilesh Patra
On Mon, Apr 04, 2022 at 08:16:07PM +0200, Andreas Tille wrote: > In general I'd recommend to follow the packaging example of our team: > > > https://salsa.debian.org/med-team/community/package_template/-/tree/master/debian/tests Yes, the template is very helpful. But it should not be used

Re: Help Required : Add autopkgtest for atropos

2022-04-04 Thread Andreas Tille
Am Mon, Apr 04, 2022 at 11:11:30PM +0530 schrieb Nilesh Patra: > Usually you would want to run the autopkgtests in a tempdir rather than > inplace, since you want to > check whether the "installed" package works or not, and not the source tree. > Simple solution is to copy the tests dir to a

Re: pigx-rnaseq now depends on megadepth

2022-04-04 Thread Andreas Tille
Uploaded the R packages as well as megadepth. Kind regards Andreas. Am Thu, Mar 31, 2022 at 05:22:42PM +0200 schrieb Steffen Möller: > Hello, > > I just also prepared > > https://salsa.debian.org/med-team/megadepth > > Comments and/or upload would be lovely. > > Many thanks and regards,

Re: Help Required : Add autopkgtest for atropos

2022-04-04 Thread Mohd Bilal
Nilesh Patra wrote: >On Mon, Apr 04, 2022 at 04:58:53PM -, Mohd Bilal wrote: > I would like to add autopkgtest for atropos[1] but Im stuck with >some .pyx files that the tests import from. > I guess the tests require these C extensions to be built before running >the test. Ive tried