Re: libbam-dev ships sam.h in /usr/include/samtools

2011-05-25 Thread Alex Mestiashvili
On 05/25/2011 04:35 AM, Charles Plessy wrote: Dear Alex, As the Perl transition is over, I have updated libbam to serve its headers in /usr/include/samtools, and libbio-samtools-perl to search for them there. You can go ahead with a similar change in cufflinks any time you like. Have a nice

Re: libbam-dev ships sam.h in /usr/include/samtools

2011-05-25 Thread Andreas Tille
Hi Alex, On Wed, May 25, 2011 at 04:33:37PM +0200, Alex Mestiashvili wrote: Cufflinks in the git repository appears to be lintian clean . The manual pages were missing , but each tool provides a help , so I converted them with help2man and edited a bit for the better appearance .

Fwd: [fedora-medical] dcm4che-test package review

2011-05-25 Thread Sebastian Hilbert
FYI: Despite being RPM maybe it can be helpful when preparing Debian packages. Sebastian -- Weitergeleitete Nachricht -- Betreff: [fedora-medical] dcm4che-test package review Datum: Mittwoch, 25. Mai 2011, 18:23:48 Von: Ankur Sinha sanjay.an...@gmail.com An:

Ginkgo-CADx package - was: Install on ubuntu 10.04.2 or debian 6

2011-05-25 Thread Sebastian Hilbert
Am Dienstag, 24. Mai 2011, 10:07:53 schrieb Mathieu Malaterre: On Tue, May 24, 2011 at 8:59 AM, Andreas Tille andr...@an3as.eu wrote: I was under the impression that Andreas and Mathieu have prepared everything and now it takes someone to upload this. Did I miss something ? There is

Re: [debian-med] Install on ubuntu 10.04.2 or debian 6

2011-05-25 Thread Thorsten Alteholz
On Wed, 25 May 2011, Sebastian Hilbert wrote: I think the cmake issue has been taken care of after an hint from upstream. Yes, at least it compiled with only a small patch under sid. But this is a huge beast, it needed more than an hour to build on my small VM... Thorsten -- To

Re: Ginkgo-CADx package - was: Install on ubuntu 10.04.2 or debian 6

2011-05-25 Thread Andreas Tille
Hi, On Wed, May 25, 2011 at 07:43:05PM +0200, Thorsten Alteholz wrote: On Wed, 25 May 2011, Sebastian Hilbert wrote: Indeed an initial package is already there. I applied some patch, but lintian still complain about a rpath for mpi. Apparently rpath is needed to go pass a lintian error

Re: Ginkgo-CADx package - was: Install on ubuntu 10.04.2 or debian 6

2011-05-25 Thread Thorsten Alteholz
On Wed, 25 May 2011, Andreas Tille wrote: I'd say for a first shot on this package which might go to experimental this rpath issue might be ignorable. Are you sure that a package with such an error can be uploaded? Usually it is ugly to have upstream provided debian/ dirs and I always try

Re: Ginkgo-CADx package - was: Install on ubuntu 10.04.2 or debian 6

2011-05-25 Thread Andreas Tille
On Wed, May 25, 2011 at 10:18:40PM +0200, Thorsten Alteholz wrote: On Wed, 25 May 2011, Andreas Tille wrote: I'd say for a first shot on this package which might go to experimental this rpath issue might be ignorable. Are you sure that a package with such an error can be uploaded? I have not

Re: libbam-dev ships sam.h in /usr/include/samtools

2011-05-25 Thread Charles Plessy
Le Wed, May 25, 2011 at 05:08:54PM +0200, Andreas Tille a écrit : On Wed, May 25, 2011 at 04:33:37PM +0200, Alex Mestiashvili wrote: Cufflinks in the git repository appears to be lintian clean . The manual pages were missing , but each tool provides a help , so I converted them with