Re: [carlos.borr...@gmail.com: [SCM] tophat branch, oneiric-ppa, updated. oneiric-ppa/1.4.0-1_oneiric3-3-g3edf06d]

2012-02-06 Thread Charles Plessy
Le Sun, Feb 05, 2012 at 03:04:44PM -0500, Carlos Borroto a écrit : Is only missing manpages. I talked to Alexandre about it and it seems we would have to use something like help2man. Upstream doesn't includes any manpage. Dear Carlos and everybody, I just uploaded tophat after correcting

Re: [carlos.borr...@gmail.com: [SCM] tophat branch, oneiric-ppa, updated. oneiric-ppa/1.4.0-1_oneiric3-3-g3edf06d]

2012-02-06 Thread Alex Mestiashvili
On 02/06/2012 09:08 AM, Charles Plessy wrote: Le Sun, Feb 05, 2012 at 03:04:44PM -0500, Carlos Borroto a écrit : Is only missing manpages. I talked to Alexandre about it and it seems we would have to use something like help2man. Upstream doesn't includes any manpage. Dear Carlos and

Re: [carlos.borr...@gmail.com: [SCM] tophat branch, oneiric-ppa, updated. oneiric-ppa/1.4.0-1_oneiric3-3-g3edf06d]

2012-02-06 Thread Charles Plessy
Le Mon, Feb 06, 2012 at 09:32:19AM +0100, Alex Mestiashvili a écrit : What these man pages should contain ? A good manpage would contains similar information as on upstreams's web manual. http://tophat.cbcb.umd.edu/manual.html But that is a lot of work, and I confess that for most of my

Re: [carlos.borr...@gmail.com: [SCM] tophat branch, oneiric-ppa, updated. oneiric-ppa/1.4.0-1_oneiric3-3-g3edf06d]

2012-02-06 Thread Carlos Borroto
On Mon, Feb 6, 2012 at 3:08 AM, Charles Plessy ple...@debian.org wrote: Le Sun, Feb 05, 2012 at 03:04:44PM -0500, Carlos Borroto a écrit : Is only missing manpages. I talked to Alexandre about it and it seems we would have to use something like help2man. Upstream doesn't includes any manpage.

Health 2.0 Developer Challenge

2012-02-06 Thread Yaroslav Halchenko
The dearest 2nd half of me let me know about http://www.health2challenge.org/ which aims at improving IT infrastructure in health industry. They regularly carry out Code-a-thons to build exciting new applications and tools for improved health care. The last one just finished in NYC and IIRC next

Re: [MoM] Packaging fis-get

2012-02-06 Thread Luis Ibanez
MoM daily report. Here is the git branch where I have been adding the files generated during the configuration and build process of fis-gtm: https://github.com/luisibanez/fis-gtm/tree/configured Here is the list of commits in that branch: https://github.com/luisibanez/fis-gtm/commits/configured

Re: [carlos.borr...@gmail.com: [SCM] tophat branch, oneiric-ppa, updated. oneiric-ppa/1.4.0-1_oneiric3-3-g3edf06d]

2012-02-06 Thread Charles Plessy
Le Mon, Feb 06, 2012 at 09:09:44AM -0500, Carlos Borroto a écrit : I just notice that we are only recommending bowtie, but bowtie is actually needed by tophat. All the actual mapping is done by bowtie. I think we should have bowtie as a dependency of the binary package. I have the commits

Re: [MoM] Packaging fis-get

2012-02-06 Thread Andreas Tille
Hi Luis On Mon, Feb 06, 2012 at 10:56:57PM -0500, Luis Ibanez wrote: MoM daily report. Thanks for the update. Here is the git branch where I have been adding the files generated during the configuration and build process of fis-gtm: https://github.com/luisibanez/fis-gtm/tree/configured