Re: Bug#728797: ITP: python-mne -- Python modules for MEG and EEG data analysis

2013-11-28 Thread Andreas Tille
Hi, On Wed, Nov 27, 2013 at 11:12:51PM +0100, Alexandre Gramfort wrote: Since I just uploaded this now only depends from ftpmaster accepting the package (sorry, currently this simply takes about one month for accepting new packages). As the owner of the ITP bug you will be notified

Re: QIIME 1.7 - any users in debian-testing/unstable ?

2013-11-28 Thread Simon Kainz
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Am 2013-11-27 14:27, schrieb Andreas Tille: Hi Steffen, On Wed, Nov 27, 2013 at 01:33:32PM +0100, Steffen Möller wrote: Hello, qiime in stable is (expectedly) outdated with version 1.4. Now, I had my colleague using the Debian package of 1.7

Re: Advent calendar

2013-11-28 Thread Emmanuel Promayon
Hi everyone, Furthermore I would like to mention another page[3] with lots of information about Debian Med packages. Besides the list of RC bugs you can also see packages that can not be built on a Debian architecture, packages that are not allowed to migrate from unstable to testing (and thus

Re: Advent calendar

2013-11-28 Thread Mathieu Malaterre
On Thu, Nov 28, 2013 at 8:27 AM, Emmanuel Promayon emmanuel.proma...@imag.fr wrote: Hi everyone, Furthermore I would like to mention another page[3] with lots of information about Debian Med packages. Besides the list of RC bugs you can also see packages that can not be built on a Debian

Sponsoring request: new upstream mia-2.0.12

2013-11-28 Thread Gert Wollny
Dear all, I prepared the packages for the latest MIA upstream release and pushed it to the git repro. The Debian changelog reads: * New upstream release * correct entries for maintainers and uploaders * correct application of linker flag -Wl,--as-needed * remove CXXFLAGS in rules

Re: QIIME 1.7 - any users in debian-testing/unstable ?

2013-11-28 Thread Andreas Tille
On Thu, Nov 28, 2013 at 09:50:10AM +0100, Simon Kainz wrote: -BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Am 2013-11-27 14:27, schrieb Andreas Tille: Hi Steffen, On Wed, Nov 27, 2013 at 01:33:32PM +0100, Steffen Möller wrote: Hello, qiime in stable is (expectedly) outdated with

Re: QIIME 1.7 - any users in debian-testing/unstable ?

2013-11-28 Thread Andreas Tille
[Sorry for my last empty mail ...] Hi On Thu, Nov 28, 2013 at 09:50:10AM +0100, Simon Kainz wrote: Wel, yes please, i woulde really appreciate that. I would prefer git over svn. My current work is available here: http://www.familiekainz.at/projekte/linux/rtax/rtax-0.984-all.tgz I turned

Bits from Debian Med team

2013-11-28 Thread Andreas Tille
Hi, some of these bits are a bit outdated but there is no point in hiding this information just because it is old. 1. FOSDEM talk 2. Jabber interview about Debian Med 3. Article about Debian Med 4. Yearly sprint of Debian Med team 5. DebConf 13 in Vaumarcus 6. Codefest of the Open Bioinformatics

Re: QIIME 1.7 - any users in debian-testing/unstable ?

2013-11-28 Thread Simon Kainz
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Am 2013-11-27 13:33, schrieb Steffen Möller: Hello, qiime in stable is (expectedly) outdated with version 1.4. Now, I had my colleague using the Debian package of 1.7 rather than installing it all by himself, but, well, all_tests.py fails

Re: QIIME 1.7 - any users in debian-testing/unstable ?

2013-11-28 Thread Simon Kainz
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Am 2013-11-28 13:39, schrieb Andreas Tille: [Sorry for my last empty mail ...] Hi On Thu, Nov 28, 2013 at 09:50:10AM +0100, Simon Kainz wrote: Wel, yes please, i woulde really appreciate that. I would prefer git over svn. My current work is

Re: Sponsoring request: new upstream mia-2.0.12

2013-11-28 Thread Andreas Tille
On Thu, Nov 28, 2013 at 01:10:38PM +0100, Gert Wollny wrote: I prepared the packages for the latest MIA upstream release and pushed it to the git repro. The Debian changelog reads: Uploaded. Thanks for the preparation Andreas. -- http://fam-tille.de -- To UNSUBSCRIBE, email to

Re: Advent calendar

2013-11-28 Thread Luis Ibanez
Regarding ITK4, Being close to the ITK development team, I will be happy to help with the process of transitioning to ITK4. If anything needs to be coordinated with ITK upstream, we will be glad to collaborate. Best Luis On Thu, Nov 28, 2013 at 2:27 AM, Emmanuel Promayon

Re: Advent calendar

2013-11-28 Thread Mathieu Malaterre
On Thu, Nov 28, 2013 at 8:27 AM, Emmanuel Promayon emmanuel.proma...@imag.fr wrote: For instance the CamiTK package depends on huge libs such as qt, vtk, insighttoolkit and gdcm. When is the best time to try a transition to Qt5, Vtk6, itk4 and gdcm2.4? This is a long debate ;) Technically

Re: Bug#728797: ITP: python-mne -- Python modules for MEG and EEG data analysis

2013-11-28 Thread Yaroslav Halchenko
On Wed, 27 Nov 2013, Alexandre Gramfort wrote: Let me know when we can advertise debian packaging. Since I just uploaded this now only depends from ftpmaster accepting the package (sorry, currently this simply takes about one month for accepting new packages). As the owner of the ITP

Re: Bug#728797: ITP: python-mne -- Python modules for MEG and EEG data analysis

2013-11-28 Thread Andreas Tille
Hi Yaroslav, On Thu, Nov 28, 2013 at 09:52:31AM -0500, Yaroslav Halchenko wrote: btw we'll have a 0.7.1 release early next week due to a few issues spotted by our early adopters... cool -- please update packaging whenever you update: +1 - upload of fixed up version to NEW will avoid us

Re: Bug#728797: ITP: python-mne -- Python modules for MEG and EEG data analysis

2013-11-28 Thread Yaroslav Halchenko
On Thu, 28 Nov 2013, Andreas Tille wrote: Hi Yaroslav, On Thu, Nov 28, 2013 at 09:52:31AM -0500, Yaroslav Halchenko wrote: btw we'll have a 0.7.1 release early next week due to a few issues spotted by our early adopters... cool -- please update packaging whenever you update: +1

Re: Bug#728797: ITP: python-mne -- Python modules for MEG and EEG data analysis

2013-11-28 Thread Andreas Tille
Hi, On Thu, Nov 28, 2013 at 11:06:33AM -0500, Yaroslav Halchenko wrote: - upload of fixed up version to NEW will avoid us needing to reupload it later on so that sid will get a fixed up version right away H, this information is new to me. If I have understood NEW queue

Re: Bug#728797: ITP: python-mne -- Python modules for MEG and EEG data analysis

2013-11-28 Thread Alexandre Gramfort
hi guys, FYI I just tagged v0.7.1 on github. For some obscure reasons I still depend on Andreas to update the package on debian.org... thanks Alex On Thu, Nov 28, 2013 at 3:52 PM, Yaroslav Halchenko y...@debian.org wrote: On Wed, 27 Nov 2013, Alexandre Gramfort wrote: Let me know when

Re: Bug#728797: ITP: python-mne -- Python modules for MEG and EEG data analysis

2013-11-28 Thread Andreas Tille
Hi Alexandre, On Thu, Nov 28, 2013 at 06:59:10PM +0100, Alexandre Gramfort wrote: FYI I just tagged v0.7.1 on github. Fine. For some obscure reasons I still depend on Andreas to update the package on debian.org... Can you please post here the actuall command line and the error message you

Aw: Re: QIIME 1.7 - any users in debian-testing/unstable ?

2013-11-28 Thread Steffen Möller
Hi Simon, Hi Simon, We also run (well, i *installed* it for some users) qiime 1.7.0+dfsg-1 from unstable. So i could also eventually try to run some tests. So contact me, just in case i should try out something. I suggest you try the lines below. Best, Steffen $ apt-get source qiime $

Re: Bug#728797: ITP: python-mne -- Python modules for MEG and EEG data analysis

2013-11-28 Thread Thorsten Alteholz
Hi Yaroslav, On Thu, 28 Nov 2013, Andreas Tille wrote: H, this information is new to me. If I have understood NEW queue correctly than it is better not to touch packages which are in the queue. Otherwise you might confuse ftpmaster or influence the position of your package to get handled

Re: [fis-gtm] ready for upload - needs sponsor

2013-11-28 Thread Laurent Parenteau
Hi Andreas, I had the time to install and quickly play with the installed GT.M, and it worked fine. I've not done deep testing, but I'd say more of a smoke test. If I hit any issue down the road, I'll let the list know. Thanks, Laurent On Mon, Nov 25, 2013 at 8:19 AM, Andreas Tille

Re: Bug#728797: ITP: python-mne -- Python modules for MEG and EEG data analysis

2013-11-28 Thread Yaroslav Halchenko
On Thu, 28 Nov 2013, Thorsten Alteholz wrote: Hi Yaroslav, On Thu, 28 Nov 2013, Andreas Tille wrote: H, this information is new to me. If I have understood NEW queue correctly than it is better not to touch packages which are in the queue. Otherwise you might confuse ftpmaster or