IGV (Was: Bug#906371: Changes in alter-sequence-alignment break build of jmodeltest)

2018-12-17 Thread Andreas Tille
On Mon, Dec 17, 2018 at 05:29:28PM +0100, Olivier Sallou wrote: > > Thanks a lot. Could you please also have a look at igv in Git? > > What is the issue? I only see bug to switch to mariadb in debian tracker https://lists.debian.org/debian-med/2018/12/msg00026.html As always feel free to

Re: cyvcf2 issue with htslib

2018-12-17 Thread Andreas Tille
Hi Liubov, On Mon, Dec 17, 2018 at 06:00:59PM +0100, Liubov Chuprikova wrote: > > Could someone please have a look? > > I have started to investigate this: the fail is related to recent upstream > changes [1] and [2]. I have no time to look deeper into this right now, > maybe at the end of the

Re: cyvcf2 issue with htslib

2018-12-17 Thread Liubov Chuprikova
Hi Andreas, On Sat, 15 Dec 2018 at 08:51, Andreas Tille wrote: > > upstream has closed issue #91[1] and it should work with Debian > packaged htslib. Thus I've added libhts-dev to Build-Depends but the build finally fails with > > ... > I: pybuild base:217: cd >

Re: Bug#906371: Bug#906371: Changes in alter-sequence-alignment break build of jmodeltest (Was: Bug#906371: jmodeltest: FTBFS in buster/sid)

2018-12-17 Thread Olivier Sallou
- Andreas Tille a écrit : > Hi Olivier, > > On Mon, Dec 17, 2018 at 03:40:30PM +0100, Olivier Sallou wrote: > > > > I fixed the issue and pushed to git my patch d/patches/fix_alter-lib.patch > > > > The lib was used but the package name in alter-lib.jar is different. > > ModelTestService

Re: Bug#906371: Bug#906371: Changes in alter-sequence-alignment break build of jmodeltest (Was: Bug#906371: jmodeltest: FTBFS in buster/sid)

2018-12-17 Thread Andreas Tille
Hi Olivier, On Mon, Dec 17, 2018 at 03:40:30PM +0100, Olivier Sallou wrote: > > I fixed the issue and pushed to git my patch d/patches/fix_alter-lib.patch > > The lib was used but the package name in alter-lib.jar is different. > ModelTestService is patched to use correct package name Thanks a

Re: [Debian-med-packaging] Bug#906371: Changes in alter-sequence-alignment break build of jmodeltest (Was: Bug#906371: jmodeltest: FTBFS in buster/sid)

2018-12-17 Thread Olivier Sallou
On 12/17/18 11:07 AM, Andreas Tille wrote: > Hi, > > after I tried to follow the initial hint of Emmanuel I admit I was not > successful to finally build the package: > > On Wed, Oct 17, 2018 at 10:32:58AM +0200, Andreas Tille wrote: >>> Good catch. The latest upstream version of