Re: Bug#937606: Droping Python2 support for Biopython

2019-12-20 Thread Andreas Tille
On Sat, Dec 21, 2019 at 07:41:53AM +0200, Graham Inggs wrote: > > I've read that it is blocked due to the Python3.8 transition. If you > > ask me this transition looks like not happening in the next 10 days > > since several packages are looking like they would need some time. > >

Re: Bug#937606: Droping Python2 support for Biopython

2019-12-20 Thread Andreas Tille
On Fri, Dec 20, 2019 at 12:54:02PM -0800, Michael Crusoe wrote: > > python-biopython 1.76-1 is already pushed to salsa.debian.org Cool! > and will be > uploaded to the archive once the current release has migrated to testing > :-) I've read that it is blocked due to the Python3.8 transition.

Re: Bug#937606: Droping Python2 support for Biopython

2019-12-20 Thread Michael Crusoe
On Fri, Dec 20, 2019 at 12:51 PM Andreas Tille wrote: > On Fri, Dec 20, 2019 at 03:15:49PM +, Peter Cock wrote: > > We (upstream) have just released Biopython 1.76 which should be > > the final release to support Python 2 anyway: > > Cool. Its dropped from the Debian package anyway so we

Re: Droping Python2 support for Biopython

2019-12-20 Thread Andreas Tille
On Fri, Dec 20, 2019 at 03:15:49PM +, Peter Cock wrote: > We (upstream) have just released Biopython 1.76 which should be > the final release to support Python 2 anyway: Cool. Its dropped from the Debian package anyway so we just do a simple upgrade (if time permits ... any takers welcome).

Re: Droping Python2 support for Biopython

2019-12-20 Thread Peter Cock
We (upstream) have just released Biopython 1.76 which should be the final release to support Python 2 anyway: https://www.open-bio.org/2019/12/20/biopython-1-76-released/ https://pypi.python.org/pypi/biopython/1.76 Peter On Thu, Dec 12, 2019 at 1:02 PM Andreas Tille wrote: > > Control: tags -1

Re: [Debian-med-packaging] Bug#938565: Autopkgtest failing - any takers for Segmentation fault in bowtie (Was: Bug#938565: sspace: Python2 removal in sid/bullseye)

2019-12-20 Thread Sascha Steinbiss
Hi, I've had another look at: > autopkgtest [15:40:05]: test example-tests: [--- > + which python > /usr/bin/python > + python > + which bowtie-build > /usr/bin/bowtie-build > + bowtie-build --help > Segmentation fault > autopkgtest [15:40:06]: test example-tests:

Re: [Scitech] Synergies when doing ports from Python2 to Python3

2019-12-20 Thread Andreas Tille
On Thu, Dec 19, 2019 at 11:29:54PM +0100, Jun Aruga wrote: > In case of Fedora Project's situation for Python 3 ports, > A Miro in Python Special Interest Group (= SIG) posted following email > to devel mailing list at the end of October. > I remember we worked applying the patch, updating the

Re: Synergies when doing ports from Python2 to Python3

2019-12-20 Thread Andreas Tille
On Thu, Dec 19, 2019 at 11:20:07PM +0100, Jun Aruga wrote: > Thank you for sharing the situation. > I am happy to help something to thrive our biology open ecosystem. I admit I'd love to see a stronger cross-distro cooperation. > I am Jun Aruga talked who communicated with you about bowtie2 and