Hi Étienne,
Am Thu, Jun 22, 2023 at 10:39:49PM +0200 schrieb Étienne Mollier:
> I have staged an upload of htslib 1.17 into experimental last
> week, and pseudo-excuses didn't raise any obvious issues[1],
> beyond a breakage of samtools 1.16, whose bump to version 1.17
> looks smooth so far. I
Hi all,
I have staged an upload of htslib 1.17 into experimental last
week, and pseudo-excuses didn't raise any obvious issues[1],
beyond a breakage of samtools 1.16, whose bump to version 1.17
looks smooth so far. I will migrate these packages this evening
to unstable.
I don't expect any
Hi again,
I just realised that I was incomplete about the main question.
This is a fixed text:
Hi Donald,
Am Tue, Jun 20, 2023 at 05:01:18PM -0400 schrieb Donald Norwood:
> > Here we are. Andreas (in CC) volunteered to answer your questions. What
> > is it about, and what are the specific
Hi Donald,
Am Tue, Jun 20, 2023 at 05:01:18PM -0400 schrieb Donald Norwood:
> > Here we are. Andreas (in CC) volunteered to answer your questions. What
> > is it about, and what are the specific questions?
> >
>
> Much appreciation for your time, I didn't want to give a general answer
>
Hi!
On 6/20/23 16:47, Nilesh Patra wrote:
Quoting Donald Norwood (cnote) from Matrix:
Hello team!
We received a press inquiry asking about the contents of the Med Blend in
bookworm, and
I wonder if here is the best place to ask or find someone who could answer a
few questions?
(Email may
Quoting Donald Norwood (cnote) from Matrix:
> Hello team!
> We received a press inquiry asking about the contents of the Med Blend in
> bookworm, and
> I wonder if here is the best place to ask or find someone who could answer a
> few questions?
> (Email may work best as this matrix thing is new
Hi,
aeskulap is dead upstream for a long time Alexander Pipelka (in CC)
maintained a Github repository to enable maintaining the code but the
last commit was a Debian patch. So it seems we will not see any
relevant upstream work in the foreseable future.
Since the package is blocking removal of
Hi Pierre,
Am Sun, Jun 18, 2023 at 09:03:49PM +0200 schrieb Pierre Gruet:
> > I opened an issue [2] and marked it in [1]. Let's see...
> >
> > [2] https://github.com/epi2me-labs/pychopper/issues/27
>
> Updates: upstream answered they would not revert to a DFSG-free license,
> although the given
Hi again,
Le 17/06/2023 à 22:14, Pierre Gruet a écrit :
Hi all,
Le 17/06/2023 à 19:37, Nilesh Patra a écrit :
On 06/17/2023 11:21 AM IST Andreas Tille wrote:
'''
1.10. "Research Purposes" means use for internal research and not
intended
for or directed towards commercial advantages or
Hi,
this is the call for the next video conference of the Debian Med team
that are an established means to organise the tasks inside our team.
Meetings usually take us only 15-20min depending what we are talking
about and how many people are joining. The next meeting is tomorrow
Hi all,
Le 17/06/2023 à 19:37, Nilesh Patra a écrit :
On 06/17/2023 11:21 AM IST Andreas Tille wrote:
'''
1.10. "Research Purposes" means use for internal research and not intended
for or directed towards commercial advantages or monetary compensation;
provided, however, that monetary
On 06/17/2023 11:21 AM IST Andreas Tille wrote:
> > > '''
> > > 1.10. "Research Purposes" means use for internal research and not intended
> > > for or directed towards commercial advantages or monetary compensation;
> > > provided, however, that monetary compensation does not include sponsored
>
Hi,
Am Fri, Jun 16, 2023 at 12:44:51PM +0200 schrieb Michael R. Crusoe:
> That's a shame. The 2.7.3 release (which is quite small) is still under the
> original license
>
> https://github.com/epi2me-labs/pychopper/compare/v2.7.2...v2.7.3
>
That's a shame. The 2.7.3 release (which is quite small) is still under the
original license
https://github.com/epi2me-labs/pychopper/compare/v2.7.2...v2.7.3
https://github.com/epi2me-labs/pychopper/releases/tag/v2.7.3
On Thu, Jun 15, 2023 at 5:54 PM Nilesh Patra
wrote:
> Hi,
>
> I'm dropping
Hi,
I'm dropping this mail to draw the attention of anyone who's interested in
updating pychopper.
While going through the list of outdated packages, I found pychopper as a
candidate. Unfortunately
upstream seems to have modified the license in a way that makes in non-dfsg
compliant.
In the
Hi hi,
I'll be in Japan for two weeks and I'll be happy to sign keys, meet
Debian folk, and possibly co-work a bit.
From June 24th - July 1st I'll be attending the 2023 Japan BioHackathon
in Kagawa, Japan.
https://2023.biohackathon.org/
From July 1st - 4th I'll be in Kyoto. I'm giving a
Hi Justin,
Am Sat, May 27, 2023 at 04:42:32AM +0100 schrieb Justin B Rye:
> Andreas Tille wroteL
> > Please add the following patch from the Debian Med team to the release
> > notes:
>
> Some English-usage suggestions:
Thanks a lot for looking onto the text in "pedantic mode". ;-) I'm not
a
Hi Steffen,
Am Fri, May 26, 2023 at 06:53:14AM +0200 schrieb Andreas Tille:
> My suggestion is that I push your text to our proposed release notes for
> Debian 13 in our Git repository. Its a good base to derive from and to
> be faster next time.
To make sure your well thought text will not be
Hi Steffen,
thanks a lot for your patch. Unfortunately it came after I filed
the according bug. I was afraid we are a bit late and thus I was
pushing a bit (also to enable translators finalising their work to
be finished with the release.
My suggestion is that I push your text to our proposed
Heya,
> Gesendet: Donnerstag, 25. Mai 2023 um 09:51 Uhr
> Von: "Andreas Tille"
> An: debian-med@lists.debian.org
> Cc: "Steffen Möller"
> Betreff: Re: Please review release notes patch
>
> Hi Nilesh,
>
> Am Wed, May 24, 2023 at 10:16:22PM +0530 schrieb Nilesh Patra:
> > On Wed, May 24, 2023 at
Package: release-notes
Severity: normal
X-Debbugs-Cc: debian-med@lists.debian.org
Please add the following patch from the Debian Med team to the release notes:
News from Debian Med Blend
As in every release new packages in the field of life sciences and medicine
were added. The
Hi all,
Le 25/05/2023 à 09:51, Andreas Tille a écrit :
Hi Nilesh,
Am Wed, May 24, 2023 at 10:16:22PM +0530 schrieb Nilesh Patra:
On Wed, May 24, 2023 at 11:28:13AM +0200, Pierre Gruet wrote:
Le 24/05/2023 à 08:25, Andreas Tille a écrit :
Hi Nilesh,
Am Wed, May 24, 2023 at 10:16:22PM +0530 schrieb Nilesh Patra:
> On Wed, May 24, 2023 at 11:28:13AM +0200, Pierre Gruet wrote:
> > Le 24/05/2023 à 08:25, Andreas Tille a écrit :
> > >
> > >
Am Wed, May 24, 2023 at 10:16:22PM +0530 schrieb Nilesh Patra:
>
> I do remember that during the bullseye release, we were looking forward
> to get nextflow into bookworm. AFAICS, that did not happen but I do see
> a capsule-nextflow package.
> Although it is mostly a deployment tool, _maybe_ it
On Wed, May 24, 2023 at 11:28:13AM +0200, Pierre Gruet wrote:
> Le 24/05/2023 à 08:25, Andreas Tille a écrit :
> >
> > https://salsa.debian.org/med-team/community/communication/-/blob/master/releasenotes/bookworm/release-notes.patch
> >
> > Please review and comment on it (or just push fixes
Moin,
Pierre Gruet, on 2023-05-24:
> Hello Andreas,
>
> Le 24/05/2023 à 08:25, Andreas Tille a écrit :
> > Hi,
> >
> > as for every release we want to increase or visibility to show
> > up in the release notes. I've drafted a patch
> >
> >
> >
Hello Andreas,
Le 24/05/2023 à 08:25, Andreas Tille a écrit :
Hi,
as for every release we want to increase or visibility to show
up in the release notes. I've drafted a patch
https://salsa.debian.org/med-team/community/communication/-/blob/master/releasenotes/bookworm/release-notes.patch
Hi,
as for every release we want to increase or visibility to show
up in the release notes. I've drafted a patch
https://salsa.debian.org/med-team/community/communication/-/blob/master/releasenotes/bookworm/release-notes.patch
Please review and comment on it (or just push fixes and
Package: release.debian.org
Severity: normal
User: release.debian@packages.debian.org
Usertags: unblock
X-Debbugs-Cc: debian-...@packages.debian.org, debian-med@lists.debian.org
Control: affects -1 + src:debian-med
Please unblock package debian-med
[ Reason ]
This is the final update of the
Hi,
this is the call for the next video conference of the Debian Med team
that are an established means to organise the tasks inside our team.
Meetings usually take us only 15-20min depending what we are talking
about and how many people are joining. The next meeting is tomorrow
On Tue, 2023-05-09 at 22:24 +0200, Pierre Gruet wrote:
> Hi Andreas,
>
> Le 09/05/2023 à 18:36, Andreas Tille a écrit :
> > Hi Pierre,
> >
> > Am Mon, May 08, 2023 at 10:50:54PM +0200 schrieb Pierre Gruet:
> > >
> > > It is very nice to hear from you on Nextflow, this is a
> > > motivation
Hi Andreas,
Le 09/05/2023 à 18:36, Andreas Tille a écrit :
Hi Pierre,
Am Mon, May 08, 2023 at 10:50:54PM +0200 schrieb Pierre Gruet:
It is very nice to hear from you on Nextflow, this is a motivation booster
for the packaging!
+1
I have indeed packaged many dependencies, and if I
Hi Pierre,
Am Mon, May 08, 2023 at 10:50:54PM +0200 schrieb Pierre Gruet:
>
> It is very nice to hear from you on Nextflow, this is a motivation booster
> for the packaging!
+1
> I have indeed packaged many dependencies, and if I remember correctly I had
> two issues at this step:
> - kryo
Hi Steffen,
Le 05/05/2023 à 22:16, Steffen Möller a écrit :
Hello,
I must admit that I am rather impressed - a series of images were
auto-downloaded to function together with singularity and this then worked on a
test data collection of the workflow. So, with singularity (or docker) in
> Gesendet: Montag, 08. Mai 2023 um 08:45 Uhr
> Von: "Charles Plessy"
> An: debian-med@lists.debian.org
> Betreff: Re: Nextflow - have just used it on our HPC cluster and liked it
>
> Hi Steffen and everybody,
>
> I also use Nextflow at work, and indeed, it makes it very easy to run a
>
On 08/05/2023 07:45, Charles Plessy wrote:
[...] In bioconda
you have no idea whether sed is from GNU of from busybox unless you try
it or dig for a package recipe in GitHub...
Hi, Charles.
In fact, an Anaconda/Bioconda 'env' is little more than defined shell
environment variables and a
Hi Steffen and everybody,
I also use Nextflow at work, and indeed, it makes it very easy to run a
pipeline many times. Also, Nextflow is a single Java executable, which
makes it easy to deploy anywhere Java is already installed.
You probably also saw the nf-core repository of modules and
Hello,
I must admit that I am rather impressed - a series of images were
auto-downloaded to function together with singularity and this then worked on a
test data collection of the workflow. So, with singularity (or docker) in
Debian, and nextflow, we would have an immediate sync with what
Hi,
this is the call for the next video conference of the Debian Med team
that are an established means to organise the tasks inside our team.
Meetings usually take us only 15-20min depending what we are talking
about and how many people are joining. The next meeting is tomorrow
tags 1034369 + patch
thanks
Andreas Tille writes:
> I guess the fix will boil down to a type casting in this line
>
>
> https://salsa.debian.org/med-team/libcereal/-/blob/master/unittests/map.hpp#L65
>
> o_esplmap.insert({random_value(gen), { random_value(gen),
> random_value(gen)
Control: tags -1 help
Hi,
I guess the fix will boil down to a type casting in this line
https://salsa.debian.org/med-team/libcereal/-/blob/master/unittests/map.hpp#L65
o_esplmap.insert({random_value(gen), { random_value(gen),
random_value(gen) }});
unfortunately my C++ knowledge is
Am Mon, Apr 03, 2023 at 09:34:13AM -0400 schrieb Benjamin Redelings:
>
> I tried a few things, but haven't figured this out yet. I see there is
> versionmangle, dversionmangle, and uversionmangle. I see that we want the
> debian version to be 4.0~beta2, not 4.0-beta2 (i.e. with a tilde). I
Many thanks Mathieu!
On Tue, Apr 4, 2023, at 3:57 AM, Mathieu Malaterre wrote:
> On Tue, Apr 4, 2023 at 8:37 AM Mathieu Malaterre wrote:
>>
>> On Mon, Apr 3, 2023 at 11:41 PM Shah, Amul wrote:
>> >
>> > All,
>> >
>> > I need some guidance. The host where we encountered a bug is sitting in a
>>
On Tue, Apr 4, 2023 at 8:37 AM Mathieu Malaterre wrote:
>
> On Mon, Apr 3, 2023 at 11:41 PM Shah, Amul wrote:
> >
> > All,
> >
> > I need some guidance. The host where we encountered a bug is sitting in a
> > lab environment with no direct Internet access. Below is the output from
> >
On Mon, Apr 3, 2023 at 11:41 PM Shah, Amul wrote:
>
> All,
>
> I need some guidance. The host where we encountered a bug is sitting in a lab
> environment with no direct Internet access. Below is the output from
> reportbug with the print-only option.
>
>
>
> I am filing a bug against glibc
All,
I need some guidance. The host where we encountered a bug is sitting in a lab
environment with no direct Internet access. Below is the output from reportbug
with the print-only option.
I am filing a bug against glibc 2.36 due to a bug in memcmp-sse2.S that causes
fis-gtm to segfault
Hi,
Thanks for the advice!
On 3/29/23 3:04 PM, Andreas Tille wrote:
Hi Benjamin,
Am Tue, Mar 28, 2023 at 07:04:52AM +0200 schrieb Pierre Gruet:
Probably you wouold like to do something as in
https://sources.debian.org/src/gedit-plugins/44.1-2/debian/watch/?hl=2#L2
for the
Hi Andreas,
Le 2023-03-29 21:04, Andreas Tille a écrit :
Hi Benjamin,
Am Tue, Mar 28, 2023 at 07:04:52AM +0200 schrieb Pierre Gruet:
Probably you wouold like to do something as in
https://sources.debian.org/src/gedit-plugins/44.1-2/debian/watch/?hl=2#L2
for the gedit-plugins package?
Hi Benjamin,
Am Tue, Mar 28, 2023 at 07:04:52AM +0200 schrieb Pierre Gruet:
> Probably you wouold like to do something as in
>
> https://sources.debian.org/src/gedit-plugins/44.1-2/debian/watch/?hl=2#L2
> for the gedit-plugins package? This was found by typing "path:debian/watch
> beta" in
Hi Benjamin,
Le 28/03/2023 à 03:52, Benjamin Redelings a écrit :
Hi,
I'd like to upload a new version 4.0-beta2 of bali-phy. It decreases
memory usage over the existing 3.6.1 by > 20fold in some cases.
The first question I have is about using uscan with the "-beta2"
suffix. I hacked the
Hi,
I'd like to upload a new version 4.0-beta2 of bali-phy. It decreases
memory usage over the existing 3.6.1 by > 20fold in some cases.
The first question I have is about using uscan with the "-beta2"
suffix. I hacked the debian/watch file to make uscan recognize the tag
name, but now its
Dear Anne,
Am Mon, Mar 20, 2023 at 12:43:27PM + schrieb Anne Ghisla:
> I'm Anne Ghisla, working at Forschungzentrum Jülich as generalist /
> support tech, with close ties to NeuroDebian. I use Debian daily at
> work, used to be active in geospatial FOSS (OSGeo, Google Summer of
> Code), and
Hello all,
I'm Anne Ghisla, working at Forschungzentrum Jülich as generalist /
support tech, with close ties to NeuroDebian. I use Debian daily at
work, used to be active in geospatial FOSS (OSGeo, Google Summer of
Code), and now have the opportunity to dedicate time to Debian
packaging.
I wish
Hi,
this is the call for the next video conference of the Debian Med team
that are an established means to organise the tasks inside our team.
Meetings usually take us only 15-20min depending what we are talking
about and how many people are joining. The next meeting is tomorrow
Hi Steffen,
Am Fri, Feb 17, 2023 at 04:43:20PM +0100 schrieb Steffen Möller:
> Hello,
>
> Some expression data crossed my way and while
>
> conda install -c bioconda bioconductor-clariomdhumantranscriptcluster.db
>
> is no big deal (unless when it is), we do not support it in Debian - it is
>
Hi,
Am Fri, Feb 17, 2023 at 07:08:25PM -0500 schrieb Sergio Durigan Junior:
> I've recently fixed a bunch of build problems that affected gatb-core's
> reverse dependencies, but when I tried to "gbp push" my changes to some
> repositories I got error messages saying that the master branch is
>
Hi,
I've recently fixed a bunch of build problems that affected gatb-core's
reverse dependencies, but when I tried to "gbp push" my changes to some
repositories I got error messages saying that the master branch is
protected.
These are the repositories that have protected branches:
- bcalm
-
Hello,
Some expression data crossed my way and while
conda install -c bioconda bioconductor-clariomdhumantranscriptcluster.db
is no big deal (unless when it is), we do not support it in Debian - it is big.
Well, at least there was a time when this was considered big, I am not so sure
any
On Fri, 2023-02-10 at 10:23 -0800, Vagrant Cascadian wrote:
> For an individual package that wants to make use of neon, the correct
> thing to do is to make the neon support detected at run-time rather than
> rely on it at build-time and enabling or disabling codepaths, features,
> etc. as
On Fri, Feb 10, 2023, at 19:23, Vagrant Cascadian wrote:
> On 2023-02-10, Mathieu Malaterre wrote:
>> On Thu, Feb 9, 2023 at 8:43 PM Andreas Tille wrote:
>> [...]
>>> according to the build logs[1] armhf fails to build (as only
>>> architecture) with
>> [...]
>>> LLVM ERROR: Symbol not found:
On 2023-02-10, Mathieu Malaterre wrote:
> On Thu, Feb 9, 2023 at 8:43 PM Andreas Tille wrote:
> [...]
>> according to the build logs[1] armhf fails to build (as only
>> architecture) with
> [...]
>> LLVM ERROR: Symbol not found: __sync_fetch_and_add_4
>
> I see that abel.d.o porterbox is offline.
Hi,
to fix
#1030884 python-cogent: FTBFS (ImportError: cannot import name 'float' from
'numpy')
and let it migrate to testing it needs to wait for
#950598 python3-jupyter-sphinx: package relies on unavailable
`ipywidgets.embed` module
which in turn needs
#896460 Please package
Dear arm porters,
On Thu, Feb 9, 2023 at 8:43 PM Andreas Tille wrote:
[...]
> according to the build logs[1] armhf fails to build (as only
> architecture) with
[...]
> LLVM ERROR: Symbol not found: __sync_fetch_and_add_4
I see that abel.d.o porterbox is offline. There is currently no other
Hi Aaron,
Am Thu, Feb 09, 2023 at 03:14:50PM -0500 schrieb Aaron M. Ucko:
> > Any idea how to fix this? I personally would probably simply
> > exclude this architecture, to not loose any time.
>
> I see that debian/rules already skips building docs on armel and mipsel,
> presumably for similar
On 2023-02-09 20:37, Andreas Tille wrote:
Hi again,
Am Thu, Feb 09, 2023 at 05:52:13PM +0100 schrieb Andreas Tille:
> That said, the np.matrix discrepancy was only just fixed recently, in
> December, by
> https://github.com/lmcinnes/umap/pull/946
I've updated the packaging, added the PR,
Andreas Tille writes:
> Any idea how to fix this? I personally would probably simply
> exclude this architecture, to not loose any time.
I see that debian/rules already skips building docs on armel and mipsel,
presumably for similar reasons; extending the exclusion to armhf ought
to work. For
Hi,
according to the build logs[1] armhf fails to build (as only
architecture) with
dh_auto_build
I: pybuild plugin_pyproject:107: Building wheel for python3.11 with "build"
module
I: pybuild base:240: python3.11 -m build --skip-dependency-check --no-isolation
--wheel --outdir
Hi again,
Am Thu, Feb 09, 2023 at 05:52:13PM +0100 schrieb Andreas Tille:
> > That said, the np.matrix discrepancy was only just fixed recently, in
> > December, by
> > https://github.com/lmcinnes/umap/pull/946
I've updated the packaging, added the PR, fixed some test issues that
were not yet
Am Thu, Feb 09, 2023 at 04:57:03PM +0100 schrieb Drew Parsons:
> tldr; https://github.com/lmcinnes/umap/pull/946
Thanks for the hint.
> There's a couple of strange aspects to this problem. The np.matrix seems to
> be generated by scipy.sparse. np.matrix is "not recommended" by numpy, but
>
On 2023-02-09 15:02, Andreas Tille wrote:
Control: tags -1 help
Am Thu, Feb 09, 2023 at 12:50:45AM +0100 schrieb Santiago Vila:
Package: src:umap-learn
Version: 0.4.5+dfsg-3
Severity: serious
Tags: ftbfs
Dear maintainer:
During a rebuild of all packages in bookworm, your package failed to
Control: tags -1 help
Am Thu, Feb 09, 2023 at 12:50:45AM +0100 schrieb Santiago Vila:
> Package: src:umap-learn
> Version: 0.4.5+dfsg-3
> Severity: serious
> Tags: ftbfs
>
> Dear maintainer:
>
> During a rebuild of all packages in bookworm, your package failed to build:
In Salsa CI you can
Am Wed, Feb 08, 2023 at 06:33:26PM -0200 schrieb Thiago Franco de Moraes:
> I pushed other patch to fix this problem.
Uploaded yesterday evening - crossing fingers all is fine now.
Thanks a lot for your contribution
Andreas.
--
http://fam-tille.de
I pushed other patch to fix this problem.
- Mensagem original -
De: "Andreas Tille"
Para: "Thiago Franco de Moraes"
Cc: "debian-med"
Enviadas: Quarta-feira, 8 de fevereiro de 2023 11:21:39
Assunto: Re: Autopkgtest fails for invesalius
Am Wed, Feb 08, 2023 at 12:03:05PM -0200 schrieb
Am Wed, Feb 08, 2023 at 12:03:05PM -0200 schrieb Thiago Franco de Moraes:
> I pushed a commit with this new patch.
Thanks for the patch. Unfortunately there is some gdcm issue left[1]:
[Errno 2] No such file or directory:
'/home/debci/.config/invesalius/config.json'
[Errno 2] No such file or
I pushed a commit with this new patch.
- Mensagem original -
De: "Thiago Franco de Moraes"
Para: "Andreas Tille"
Cc: "debian-med"
Enviadas: Quarta-feira, 8 de fevereiro de 2023 10:23:55
Assunto: Re: Autopkgtest fails for invesalius
Hi Andreas,
It's because Python-3.11
Hi Andreas,
It's because Python-3.11 gettext.translation doesn't have the 'codeset'
parameter anymore. I'll submit a commit with a new patch to fix this problem.
Thanks Andreas.
Best regards.
- Mensagem original -
De: "Andreas Tille"
Para: "debian-med" , "Thiago Franco Moraes"
Dear Rebecca,
Am Tue, Feb 07, 2023 at 08:04:01AM + schrieb Rebecca N. Palmer:
> On 07/02/2023 07:00, Andreas Tille wrote:
> > Thanks for explaining your reason for the change. I admit I have not
> > heard about this
>
> I don't know how widely accepted this currently is, either within
Hi Thiago,
seems that test never worked before but IMHO that should be fixed.
Both debci[1] and salsa CI[2] agree about:
autopkgtest [03:15:09]: test run-unit-test: [---
[Errno 2] No such file or directory:
'/home/debci/.config/invesalius/config.json'
[Errno 2] No such file
On 07/02/2023 07:00, Andreas Tille wrote:
Am Mon, Feb 06, 2023 at 10:21:46PM + schrieb Rebecca N. Palmer:
I switched it because of the general recommendation to move away from master
because it's potentially offensive.
Thanks for explaining your reason for the change. I admit I have not
I switched it because of the general recommendation to move away from
master because it's potentially offensive. I had forgotten that that
team policy existed.
It's generally my intention that if I list myself as Uploader then I'm
taking full responsibility, and won't let that package get
> I did not upgrade, just pushed to Git to prepare for future
> uploads. I will not upload any orthan* package without your
> confirmation.
Great! Be sure that as soon as a new suitable is available, I'll take
care of the upload.
Sébastien-
Am Mon, Feb 06, 2023 at 09:09:16AM +0100 schrieb Sébastien Jodogne:
> Unfortunately, this was not a good idea to upgrade to this newer
> version, as it is not approved yet by myself regarding GNU/Linux
> deployments. An approved version is expected soon, in March 2023.
I did not upgrade, just
Hi Andreas,
On Mon, 6 Feb 2023 at 08:58, Andreas Tille wrote:
>
> Hi Sébastian,
>
> I injected the latest version of orthanc into Git but got
>
> CMake Error at cmake_install.cmake:96 (file):
> file INSTALL cannot find
> "/build/orthanc-1.11.2+dfsg/BuildServer/libDelayedDeletion.so": No such
Hi Sébastian,
I injected the latest version of orthanc into Git but got
CMake Error at cmake_install.cmake:96 (file):
file INSTALL cannot find
"/build/orthanc-1.11.2+dfsg/BuildServer/libDelayedDeletion.so": No such
file or directory.
Any idea how to fix this?
Kind regards
Andreas.
--
Hi Andreas, Étienne
On Sun, 5 Feb 2023 at 19:31, Andreas Tille wrote:
> we need to check why q2-feature-classifier does not work with
> scikit-learn. But for the moment it would help if scikit-learn could
> migrate to testing to free lots of its rdepends from testing removal
> warnings.
I
Hi,
Andreas Tille, on 2023-02-05:
> we need to check why q2-feature-classifier does not work with
> scikit-learn. But for the moment it would help if scikit-learn could
> migrate to testing to free lots of its rdepends from testing removal
> warnings.
q2-feature-classifier and also
Hi,
we need to check why q2-feature-classifier does not work with
scikit-learn. But for the moment it would help if scikit-learn could
migrate to testing to free lots of its rdepends from testing removal
warnings.
Thanks a lot
Andreas.
--
http://fam-tille.de
Hi Andreas,
Le 03/02/2023 à 13:05, Andreas Tille a écrit :
Hi Pierre,
Am Fri, Feb 03, 2023 at 11:32:07AM +0100 schrieb Pierre Gruet:
[16:13:15] Found snippy-vcf_to_tab - /usr/bin/snippy-vcf_to_tab
[16:13:15] Found snippy-vcf_report - /usr/bin/snippy-vcf_report
[16:13:15] Checking version:
Hi,
this is the call for the next video conference of the Debian Med team
that are an established means to organise the tasks inside our team.
We diverge from our usual rule
First Friday of a month
Third Sunday of a month
since I'm traveling today and thus we agreed on Matrix to meet on
Andreas Tille writes:
> +Architecture: amd64 arm64
Indeed. Sorry for making this restriction necessary, and for missing
the need for it earlier -- I suppose Britney doesn't check very far up
the reverse dependency tree for autopkgtest regressions, just for
buildability ones, and doesn't care
Hi Pierre,
Am Fri, Feb 03, 2023 at 11:32:07AM +0100 schrieb Pierre Gruet:
> > [16:13:15] Found snippy-vcf_to_tab - /usr/bin/snippy-vcf_to_tab
> > [16:13:15] Found snippy-vcf_report - /usr/bin/snippy-vcf_report
> > [16:13:15] Checking version: samtools --version is >= 1.7 - ok, have 1.16
> >
Hi Andreas,
Le 03/02/2023 à 11:17, Andreas Tille a écrit :
Hi,
I realised that snippy autopkgtest is failing for i386 and s390x[1]
The log for i386[2] says:
Get:310 http://deb.debian.org/debian testing/main i386 libsnpeff-java all
5.1+d+dfsg-3 [2,150 kB]
...
[16:13:15] Found snpEff -
Hi,
I realised that snippy autopkgtest is failing for i386 and s390x[1]
The log for i386[2] says:
Get:310 http://deb.debian.org/debian testing/main i386 libsnpeff-java all
5.1+d+dfsg-3 [2,150 kB]
...
[16:13:15] Found snpEff - /usr/bin/snpEff
...
[16:13:15] Found snippy-vcf_to_tab -
Am Thu, Feb 02, 2023 at 11:27:38AM +0100 schrieb Maarten L. Hekkelman:
> Op 02-02-2023 om 10:09 schreef Andreas Tille:
> > Am Thu, Feb 02, 2023 at 10:01:12AM +0100 schrieb Maarten L. Hekkelman:
> > > I'll try to update all packages today.
> > Thanks a lot and please ping here if you need help to
Op 02-02-2023 om 11:43 schreef Andreas Tille:
Can you please make a list we should watch?
https://udd.debian.org/dmd/?maarten%40hekkelman.com
Perhaps someone else might have a look at this?
Maybe a binnmu for the failing packages is needed when libcifpp (and
libzeep) are installed? Don't
Op 02-02-2023 om 10:09 schreef Andreas Tille:
Am Thu, Feb 02, 2023 at 10:01:12AM +0100 schrieb Maarten L. Hekkelman:
I'll try to update all packages today.
Thanks a lot and please ping here if you need help to coordinate such
help.
Well... things are not running as smoothly as I was hoping
Am Thu, Feb 02, 2023 at 10:01:12AM +0100 schrieb Maarten L. Hekkelman:
> I'll try to update all packages today.
Thanks a lot and please ping here if you need help to coordinate such
help.
Kind regards
Andreas.
--
http://fam-tille.de
I'll try to update all packages today.
-maarten
Op 01-02-2023 om 15:14 schreef Andreas Tille:
Hi Maarten and others,
as subject says we are right before the freeze since packages need some
time to migrate to testing to reach the next stable release. We should
upload what should be in the
Andreas Tille writes:
> as subject says we are right before the freeze since packages need some
> time to migrate to testing to reach the next stable release. We should
> upload what should be in the next release *right now*. I've explicitly
I've been working on ncbi-entrez-direct, but
Hi Maarten and others,
as subject says we are right before the freeze since packages need some
time to migrate to testing to reach the next stable release. We should
upload what should be in the next release *right now*. I've explicitly
kept Maarten in CC since I have no idea how these package
501 - 600 of 24135 matches
Mail list logo
