[med-svn] [khmer] branch upstream updated (abe8250 - 7483ff8)

2015-08-11 Thread Michael Crusoe
This is an automated email from the git hooks/post-receive script. misterc-guest pushed a change to branch upstream in repository khmer. from abe8250 Imported Upstream version 2.0~rc2+dfsg new 7483ff8 Imported Upstream version 2.0~rc3+dfsg The 1 revisions listed above as new

[med-svn] [khmer] branch master updated (e2ed6fe - 8ea7186)

2015-08-11 Thread Michael Crusoe
This is an automated email from the git hooks/post-receive script. misterc-guest pushed a change to branch master in repository khmer. from e2ed6fe include missing SphinxDoc depends adds abe8250 Imported Upstream version 2.0~rc2+dfsg new 7483ff8 Imported Upstream

[med-svn] [khmer] 01/01: pristine-tar data for khmer_2.0~rc3+dfsg.orig.tar.xz

2015-08-11 Thread Michael Crusoe
This is an automated email from the git hooks/post-receive script. misterc-guest pushed a commit to branch pristine-tar in repository khmer. commit c89245645d6d960cb19183229f7bdc7ccc8a39eb Author: Michael R. Crusoe cru...@ucdavis.edu Date: Tue Aug 11 20:04:21 2015 -0700 pristine-tar data

[med-svn] [khmer] 02/02: Merge branch 'upstream'

2015-08-11 Thread Michael Crusoe
This is an automated email from the git hooks/post-receive script. misterc-guest pushed a commit to branch master in repository khmer. commit 8ea7186da036ab103314519dcd03883a0f4b9978 Merge: e2ed6fe 7483ff8 Author: Michael R. Crusoe cru...@ucdavis.edu Date: Tue Aug 11 20:10:58 2015 -0700

[med-svn] [khmer] annotated tag upstream/2.0_rc3+dfsg created (now d9dcf4f)

2015-08-11 Thread Michael Crusoe
This is an automated email from the git hooks/post-receive script. misterc-guest pushed a change to annotated tag upstream/2.0_rc3+dfsg in repository khmer. at d9dcf4f (tag) tagging 7483ff8d0a0efb83da513a3dc90f5fc8de9358f1 (commit) replaces upstream/2.0_rc2+dfsg tagged by

[med-svn] [python-pbcore] 02/11: Remove executable bit from installed h5 data files

2015-08-11 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository python-pbcore. commit 68a3ebb3258d7b7c0856cb9705b24a31f673f1ab Author: Afif Elghraoui a...@ghraoui.name Date: Mon Aug 10 22:52:56 2015 -0700 Remove executable bit

[med-svn] [python-pbcore] branch pristine-tar updated (f3a0c52 - c37d5f7)

2015-08-11 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch pristine-tar in repository python-pbcore. from f3a0c52 pristine-tar data for python-pbcore_1.2.1+dfsg1.orig.tar.xz new c37d5f7 pristine-tar data for

[med-svn] [python-pbcore] 08/11: Install upstream-provided convenience scripts

2015-08-11 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository python-pbcore. commit fcb7bb9e78700aa63605bc2a44a7c31daad61740 Author: Afif Elghraoui a...@ghraoui.name Date: Tue Aug 11 00:30:10 2015 -0700 Install

[med-svn] [python-pbcore] 01/11: Drop non-functional python3 package

2015-08-11 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository python-pbcore. commit dafea9c3a095d483965d16cef85465861fefb3c4 Author: Afif Elghraoui a...@ghraoui.name Date: Mon Aug 10 21:50:39 2015 -0700 Drop non-functional

[med-svn] [python-pbcore] 10/11: Install upstream changelog and readme in main package (not doc package)

2015-08-11 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository python-pbcore. commit b20eeb0e92d9071855754e547346b2a7bc780ff6 Author: Afif Elghraoui a...@ghraoui.name Date: Tue Aug 11 00:36:20 2015 -0700 Install upstream

[med-svn] [python-pbcore] branch master updated (b6a9edd - 8574ffb)

2015-08-11 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch master in repository python-pbcore. from b6a9edd Add override for clean target in d/rules new dafea9c Drop non-functional python3 package new 68a3ebb Remove

[med-svn] [python-pbcore] 07/11: Remove executable bit from non-executable file

2015-08-11 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository python-pbcore. commit b3b09484fd3f9496bfe26668714979d962716cbb Author: Afif Elghraoui a...@ghraoui.name Date: Mon Aug 10 23:31:12 2015 -0700 Remove executable bit

[med-svn] [python-pbcore] 09/11: Refresh patch

2015-08-11 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository python-pbcore. commit 16e3ec543e01d66bda8caebdf688a1f0d5853d3e Author: Afif Elghraoui a...@ghraoui.name Date: Tue Aug 11 00:35:10 2015 -0700 Refresh patch ---

[med-svn] [python-pbcore] branch upstream updated (716f5d3 - cd3bf35)

2015-08-11 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch upstream in repository python-pbcore. from 716f5d3 Imported Upstream version 1.2.1+dfsg1 new cd3bf35 Imported Upstream version 1.2.2+dfsg1 The 1 revisions listed above as

[med-svn] [python-pbcore] 01/01: Set up debian/rules for running the tests as pybuild intended

2015-08-11 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch topic/pybuild-intended-testsetup in repository python-pbcore. commit faa6f7e31296e230f4fe4546911efd5bb5b06d87 Author: Afif Elghraoui a...@ghraoui.name Date: Wed Aug 5 01:43:11 2015 -0700

[med-svn] [python-pbcore] branch topic/pybuild-intended-testsetup created (now faa6f7e)

2015-08-11 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch topic/pybuild-intended-testsetup in repository python-pbcore. at faa6f7e Set up debian/rules for running the tests as pybuild intended This branch includes the following new

[med-svn] [python-pbcore] annotated tag upstream/1.2.2+dfsg1 created (now 42e81e8)

2015-08-11 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to annotated tag upstream/1.2.2+dfsg1 in repository python-pbcore. at 42e81e8 (tag) tagging cd3bf3529d696597f98846c32c28999d5534aea3 (commit) replaces upstream/1.2.1+dfsg1 tagged by

[med-svn] [python-pbcore] 06/11: Update version in changelog

2015-08-11 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository python-pbcore. commit 30c724c74b4e39d7136ad0d399b6589bbcfff98c Author: Afif Elghraoui a...@ghraoui.name Date: Mon Aug 10 23:03:43 2015 -0700 Update version in

[med-svn] [python-pbcore] 01/01: pristine-tar data for python-pbcore_1.2.2+dfsg1.orig.tar.xz

2015-08-11 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch pristine-tar in repository python-pbcore. commit c37d5f7512331b5db4aa4b9f7b03b9bfad5ec125 Author: Afif Elghraoui a...@ghraoui.name Date: Mon Aug 10 22:55:58 2015 -0700 pristine-tar data

[med-svn] [python-pbcore] 11/11: Fix changelog file name

2015-08-11 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository python-pbcore. commit 8574ffb7c9ae1217cffca79f08004c3cfd5e7712 Author: Afif Elghraoui a...@ghraoui.name Date: Tue Aug 11 00:47:43 2015 -0700 Fix changelog file name

[med-svn] [python-pbcore] 05/11: Merge tag 'upstream/1.2.2+dfsg1'

2015-08-11 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository python-pbcore. commit 74b076bf4fc88417a1b0d53d0e7cf0e4fa25d035 Merge: 10a2a68 cd3bf35 Author: Afif Elghraoui a...@ghraoui.name Date: Mon Aug 10 22:55:58 2015 -0700

[med-svn] [beast-mcmc] 01/01: Backport to Jessie

2015-08-11 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a commit to tag debian/jessie/1.8.2_754b844-1_bpo8+1 in repository beast-mcmc. commit 5b08e5df5f0e30536472c5ee463bc9e0d174ca5c Author: Andreas Tille ti...@debian.org Date: Mon Aug 3 13:48:46 2015 +0200

[med-svn] [beast-mcmc] tag debian/jessie/1.8.2_754b844-1_bpo8+1 created (now 5b08e5d)

2015-08-11 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a change to tag debian/jessie/1.8.2_754b844-1_bpo8+1 in repository beast-mcmc. at 5b08e5d (commit) This tag includes the following new commits: new 5b08e5d Backport to Jessie The 1 revisions

[med-svn] r19912 - trunk/packages/sortmerna/trunk/debian

2015-08-11 Thread Andreas Tille
Author: tille Date: 2015-08-11 09:12:10 + (Tue, 11 Aug 2015) New Revision: 19912 Added: trunk/packages/sortmerna/trunk/debian/doc-base trunk/packages/sortmerna/trunk/debian/lintian-overrides Modified: trunk/packages/sortmerna/trunk/debian/changelog

[med-svn] [khmer] branch master updated (2fe66a6 - c76d6be)

2015-08-11 Thread Michael Crusoe
This is an automated email from the git hooks/post-receive script. misterc-guest pushed a change to branch master in repository khmer. from 2fe66a6 do not track symbols new c76d6be try setting the PYTHONPATH The 1 revisions listed above as new are entirely new to this

[med-svn] [khmer] 01/01: try setting the PYTHONPATH

2015-08-11 Thread Michael Crusoe
This is an automated email from the git hooks/post-receive script. misterc-guest pushed a commit to branch master in repository khmer. commit c76d6be5e8408a1251e9ff161ac75d2766445779 Author: Michael R. Crusoe michael.cru...@gmail.com Date: Mon Aug 10 20:23:25 2015 -0700 try setting the

[med-svn] r19913 - trunk/packages/sumatra/trunk/debian

2015-08-11 Thread Andreas Tille
Author: tille Date: 2015-08-11 12:15:35 + (Tue, 11 Aug 2015) New Revision: 19913 Modified: trunk/packages/sumatra/trunk/debian/sumatra.1 Log: File was heavily edited Modified: trunk/packages/sumatra/trunk/debian/sumatra.1

[med-svn] r19915 - in trunk/packages/sumaclust/trunk/debian: . patches

2015-08-11 Thread Andreas Tille
Author: tille Date: 2015-08-11 13:05:05 + (Tue, 11 Aug 2015) New Revision: 19915 Modified: trunk/packages/sumaclust/trunk/debian/changelog trunk/packages/sumaclust/trunk/debian/patches/hardening.patch Log: Upload to new Modified: trunk/packages/sumaclust/trunk/debian/changelog

[med-svn] [khmer] 01/04: ubuntu fixes

2015-08-11 Thread Michael Crusoe
This is an automated email from the git hooks/post-receive script. misterc-guest pushed a commit to branch master in repository khmer. commit 496f70894111e2f5b2f952421ec83d7f8421c8f7 Author: Michael R. Crusoe mcru...@msu.edu Date: Tue Aug 11 20:01:47 2015 -0400 ubuntu fixes ---

[med-svn] [khmer] 03/04: add file dep

2015-08-11 Thread Michael Crusoe
This is an automated email from the git hooks/post-receive script. misterc-guest pushed a commit to branch master in repository khmer. commit 0599ec47932e16ba89dada4f2c8267d6d7e6f08c Author: Michael R. Crusoe mcru...@msu.edu Date: Tue Aug 11 21:21:07 2015 -0400 add file dep ---

[med-svn] [khmer] 02/04: added missing leading /

2015-08-11 Thread Michael Crusoe
This is an automated email from the git hooks/post-receive script. misterc-guest pushed a commit to branch master in repository khmer. commit 24b5543626b71a33d83d862c31431da17ef7246b Author: Michael R. Crusoe mcru...@msu.edu Date: Tue Aug 11 21:15:28 2015 -0400 added missing leading / ---

[med-svn] [khmer] 04/04: include missing SphinxDoc depends

2015-08-11 Thread Michael Crusoe
This is an automated email from the git hooks/post-receive script. misterc-guest pushed a commit to branch master in repository khmer. commit e2ed6fe567ab73cb80387a4188d720a6ef87f6d1 Author: Michael R. Crusoe mcru...@msu.edu Date: Tue Aug 11 21:28:43 2015 -0400 include missing SphinxDoc

[med-svn] [khmer] branch master updated (ff75b29 - e2ed6fe)

2015-08-11 Thread Michael Crusoe
This is an automated email from the git hooks/post-receive script. misterc-guest pushed a change to branch master in repository khmer. from ff75b29 Add test of liboxli-dev install new 496f708 ubuntu fixes new 24b5543 added missing leading / new 0599ec4 add

[med-svn] [khmer] branch master updated (8ea7186 - 9a3304b)

2015-08-11 Thread Michael Crusoe
This is an automated email from the git hooks/post-receive script. misterc-guest pushed a change to branch master in repository khmer. from 8ea7186 Merge branch 'upstream' new 9a3304b rc3 The 1 revisions listed above as new are entirely new to this repository and will be

[med-svn] [khmer] branch pristine-tar updated (582c882 - c892456)

2015-08-11 Thread Michael Crusoe
This is an automated email from the git hooks/post-receive script. misterc-guest pushed a change to branch pristine-tar in repository khmer. from 582c882 pristine-tar data for khmer_2.0~rc2+dfsg.orig.tar.xz new c892456 pristine-tar data for khmer_2.0~rc3+dfsg.orig.tar.xz The

[med-svn] [khmer] 01/01: Add test of liboxli-dev install

2015-08-11 Thread Kevin Murray
This is an automated email from the git hooks/post-receive script. daube-guest pushed a commit to branch master in repository khmer. commit ff75b29347d37ede58b1b7ce6857fc0a67cbf3a1 Author: Kevin Murray s...@kdmurray.id.au Date: Wed Aug 12 09:48:18 2015 +1000 Add test of liboxli-dev

[med-svn] [python-pbcore] 02/02: Update changelog

2015-08-11 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository python-pbcore. commit 923a2d8f013a87ebca3e36227c707feca5751482 Author: Afif Elghraoui a...@ghraoui.name Date: Tue Aug 11 19:39:55 2015 -0700 Update changelog ---

[med-svn] [python-pbcore] branch master updated (8574ffb - 923a2d8)

2015-08-11 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch master in repository python-pbcore. from 8574ffb Fix changelog file name new 1da9767 Fix configuration of autopkgtests new 923a2d8 Update changelog The 2

[med-svn] [python-pbcore] 01/02: Fix configuration of autopkgtests

2015-08-11 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository python-pbcore. commit 1da97678b713b0ff79090fdec9dd6381dca88726 Author: Afif Elghraoui a...@ghraoui.name Date: Tue Aug 11 19:37:50 2015 -0700 Fix configuration of