[med-svn] [cufflinks] 01/01: add a closes to the previous changelog entry

2016-08-16 Thread Mattia Rizzolo
This is an automated email from the git hooks/post-receive script. mattia pushed a commit to branch master in repository cufflinks. commit 3a4814fd4bf401f6243a6ab2203f72591fee0124 Author: Mattia Rizzolo Date: Tue Aug 16 17:34:50 2016 + add a closes to the previous changelog entry ---

[med-svn] [cufflinks] branch master updated (da5b4bd -> 3a4814f)

2016-08-16 Thread Mattia Rizzolo
This is an automated email from the git hooks/post-receive script. mattia pushed a change to branch master in repository cufflinks. from da5b4bd Fix gcc-6.1 build issue caused by an unmaintained code copy of liblemon. new 3a4814f add a closes to the previous changelog entry T

[med-svn] [cufflinks] annotated tag upstream/2.2.1+dfsg created (now 72d87e0)

2016-08-16 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a change to annotated tag upstream/2.2.1+dfsg in repository cufflinks. at 72d87e0 (tag) tagging 4fe2b2e595b10b8f0fbf95b0c686037163d376c0 (commit) replaces upstream/2.2.1 tagged by Andreas Tille

[med-svn] [cufflinks] tag debian/2.2.1-3 created (now da5b4bd)

2016-08-16 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a change to tag debian/2.2.1-3 in repository cufflinks. at da5b4bd (commit) No new revisions were added by this update. -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/

[med-svn] [cufflinks] 01/01: pristine-tar data for cufflinks_2.2.1.orig.tar.gz

2016-08-16 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch pristine-tar in repository cufflinks. commit d5cb9fc507613382d60656cd50cc6fecee8b9a99 Author: Andreas Tille Date: Tue Aug 16 13:41:17 2016 +0200 pristine-tar data for cufflinks_2.2.1.orig.ta

[med-svn] [cufflinks] branch pristine-tar updated (79d7740 -> d5cb9fc)

2016-08-16 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a change to branch pristine-tar in repository cufflinks. from 79d7740 pristine-tar data for cufflinks_2.2.1+dfsg.orig.tar.xz new d5cb9fc pristine-tar data for cufflinks_2.2.1.orig.tar.gz The 1 revi

[med-svn] [cufflinks] 02/02: Fix gcc-6.1 build issue caused by an unmaintained code copy of liblemon.

2016-08-16 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository cufflinks. commit da5b4bd01a6cc62c3f2514bf01252797c6d16b37 Author: Andreas Tille Date: Tue Aug 16 16:13:28 2016 +0200 Fix gcc-6.1 build issue caused by an unmaintained c

[med-svn] [odil] 01/01: pristine-tar data for odil_0.7.2.orig.tar.gz

2016-08-16 Thread Julien Lamy
This is an automated email from the git hooks/post-receive script. lamy-guest pushed a commit to branch pristine-tar in repository odil. commit 81b197c37b06ec61072250d30356f19906fa4101 Author: Julien Lamy Date: Tue Aug 16 13:20:55 2016 +0200 pristine-tar data for odil_0.7.2.orig.tar.gz --

[med-svn] [odil] branch upstream updated (ff5fc36 -> 4a4dba2)

2016-08-16 Thread Julien Lamy
This is an automated email from the git hooks/post-receive script. lamy-guest pushed a change to branch upstream in repository odil. from ff5fc36 Imported Upstream version 0.7.1 adds 4a4dba2 Imported Upstream version 0.7.2 No new revisions were added by this update. Summary of

[med-svn] [odil] branch pristine-tar updated (0dfa442 -> 81b197c)

2016-08-16 Thread Julien Lamy
This is an automated email from the git hooks/post-receive script. lamy-guest pushed a change to branch pristine-tar in repository odil. from 0dfa442 pristine-tar data for odil_0.7.1.orig.tar.gz new 81b197c pristine-tar data for odil_0.7.2.orig.tar.gz The 1 revisions listed ab

[med-svn] [odil] 03/03: New upstream release

2016-08-16 Thread Julien Lamy
This is an automated email from the git hooks/post-receive script. lamy-guest pushed a commit to branch master in repository odil. commit 1c5cfeb10510876fddc1b6054fc9ec9cea5d5388 Author: Julien Lamy Date: Tue Aug 16 15:46:03 2016 +0200 New upstream release --- debian/changelog | 6 +

[med-svn] [odil] 02/03: Merge tag 'upstream/0.7.2'

2016-08-16 Thread Julien Lamy
This is an automated email from the git hooks/post-receive script. lamy-guest pushed a commit to branch master in repository odil. commit 1fd0ea3b191bb7b6eb783a6afbc25d8f68dbb8a5 Merge: 73d67c5 4a4dba2 Author: Julien Lamy Date: Tue Aug 16 13:20:56 2016 +0200 Merge tag 'upstream/0.7.2'

[med-svn] [odil] branch master updated (73d67c5 -> 1c5cfeb)

2016-08-16 Thread Julien Lamy
This is an automated email from the git hooks/post-receive script. lamy-guest pushed a change to branch master in repository odil. from 73d67c5 Add changelog entry new 4a4dba2 Imported Upstream version 0.7.2 new 1fd0ea3 Merge tag 'upstream/0.7.2' new 1c5cfeb

[med-svn] [odil] 01/03: Imported Upstream version 0.7.2

2016-08-16 Thread Julien Lamy
This is an automated email from the git hooks/post-receive script. lamy-guest pushed a commit to branch master in repository odil. commit 4a4dba294fbe6704732cd547a2f6544e76e9a6b6 Author: Julien Lamy Date: Tue Aug 16 13:20:55 2016 +0200 Imported Upstream version 0.7.2 --- .travis.yml

[med-svn] r22692 - trunk/packages/R/r-bioc-rtracklayer/tags

2016-08-16 Thread Andreas Tille
Author: tille Date: 2016-08-16 13:41:07 + (Tue, 16 Aug 2016) New Revision: 22692 Added: trunk/packages/R/r-bioc-rtracklayer/tags/1.32.2-1/ Removed: trunk/packages/R/r-bioc-rtracklayer/tags/1.30.1-1/ Log: Tagged 1.32.2-1 ___ debian-med-commit

[med-svn] r22690 - trunk/packages/R/r-bioc-biostrings/tags

2016-08-16 Thread Andreas Tille
Author: tille Date: 2016-08-16 13:32:38 + (Tue, 16 Aug 2016) New Revision: 22690 Added: trunk/packages/R/r-bioc-biostrings/tags/2.40.2-1/ Removed: trunk/packages/R/r-bioc-biostrings/tags/2.38.0-1/ Log: Tagged 2.40.2-1 ___ debian-med-commit m

[med-svn] r22688 - trunk/packages/R/r-bioc-gviz/tags

2016-08-16 Thread Andreas Tille
Author: tille Date: 2016-08-16 13:12:05 + (Tue, 16 Aug 2016) New Revision: 22688 Added: trunk/packages/R/r-bioc-gviz/tags/1.16.4-1/ Removed: trunk/packages/R/r-bioc-gviz/tags/1.8.4-1/ Log: Tagged 1.16.4-1 ___ debian-med-commit mailing list d

[med-svn] r22687 - trunk/packages/R/r-bioc-gviz/trunk/debian

2016-08-16 Thread Andreas Tille
Author: tille Date: 2016-08-16 13:11:11 + (Tue, 16 Aug 2016) New Revision: 22687 Modified: trunk/packages/R/r-bioc-gviz/trunk/debian/changelog Log: New upstream version Modified: trunk/packages/R/r-bioc-gviz/trunk/debian/changelog ==

[med-svn] r22685 - trunk/packages/R/r-bioc-s4vectors/trunk/debian

2016-08-16 Thread Andreas Tille
Author: tille Date: 2016-08-16 13:03:46 + (Tue, 16 Aug 2016) New Revision: 22685 Modified: trunk/packages/R/r-bioc-s4vectors/trunk/debian/changelog Log: New upstream version Modified: trunk/packages/R/r-bioc-s4vectors/trunk/debian/changelog

[med-svn] r22684 - trunk/packages/mafft/tags

2016-08-16 Thread Andreas Tille
Author: tille Date: 2016-08-16 12:49:07 + (Tue, 16 Aug 2016) New Revision: 22684 Added: trunk/packages/mafft/tags/7.305-1/ Removed: trunk/packages/mafft/tags/7.270-1/ Log: Tagged 7.305-1 ___ debian-med-commit mailing list debian-med-commit@l

[med-svn] r22683 - trunk/packages/mafft/trunk/debian

2016-08-16 Thread Andreas Tille
Author: tille Date: 2016-08-16 12:48:24 + (Tue, 16 Aug 2016) New Revision: 22683 Modified: trunk/packages/mafft/trunk/debian/changelog Log: New upstream version Modified: trunk/packages/mafft/trunk/debian/changelog === --- tr

[med-svn] [last-align] branch upstream updated (d1b9bf4 -> f587ced)

2016-08-16 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a change to branch upstream in repository last-align. from d1b9bf4 Imported Upstream version 746 new f587ced Imported Upstream version 752 The 1 revisions listed above as "new" are entirely new to

[med-svn] [last-align] annotated tag upstream/752 created (now 07bb510)

2016-08-16 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a change to annotated tag upstream/752 in repository last-align. at 07bb510 (tag) tagging f587cedc3fac783b10361b16cd4a4ced83dfb55b (commit) replaces upstream/746 tagged by Andreas Tille on

[med-svn] [last-align] tag debian/752-1 created (now 53dd487)

2016-08-16 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a change to tag debian/752-1 in repository last-align. at 53dd487 (commit) No new revisions were added by this update. -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/l

[med-svn] [last-align] 01/01: pristine-tar data for last-align_752.orig.tar.xz

2016-08-16 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch pristine-tar in repository last-align. commit cc5c473020ff26d6f22fbbf487232b98e3e0faff Author: Andreas Tille Date: Tue Aug 16 14:34:55 2016 +0200 pristine-tar data for last-align_752.orig.ta

[med-svn] [last-align] 01/03: Imported Upstream version 752

2016-08-16 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository last-align. commit f587cedc3fac783b10361b16cd4a4ced83dfb55b Author: Andreas Tille Date: Tue Aug 16 14:34:54 2016 +0200 Imported Upstream version 752 --- ChangeLog.txt

[med-svn] [last-align] branch master updated (8ec1f61 -> 53dd487)

2016-08-16 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a change to branch master in repository last-align. from 8ec1f61 last-align (746-1) unstable; urgency=medium new f587ced Imported Upstream version 752 new 7d1ff41 Merge tag 'upstream/752'

[med-svn] [last-align] 02/03: Merge tag 'upstream/752'

2016-08-16 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository last-align. commit 7d1ff41d8071e158c37de2608ea188030dc7d422 Merge: 8ec1f61 f587ced Author: Andreas Tille Date: Tue Aug 16 14:34:55 2016 +0200 Merge tag 'upstream/752'

[med-svn] [last-align] branch pristine-tar updated (50af093 -> cc5c473)

2016-08-16 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a change to branch pristine-tar in repository last-align. from 50af093 pristine-tar data for last-align_746.orig.tar.xz new cc5c473 pristine-tar data for last-align_752.orig.tar.xz The 1 revisions

[med-svn] [last-align] 03/03: New upstream version

2016-08-16 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository last-align. commit 53dd487de3e829fd945212be4b89a9cdae5a25d8 Author: Andreas Tille Date: Tue Aug 16 14:39:05 2016 +0200 New upstream version --- debian/changelog | 6 +++

[med-svn] [raxml] 01/01: pristine-tar data for raxml_8.2.9+dfsg.orig.tar.xz

2016-08-16 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch pristine-tar in repository raxml. commit 8f113ded525fc6337e07bef7b58a214335f4856a Author: Andreas Tille Date: Tue Aug 16 14:08:07 2016 +0200 pristine-tar data for raxml_8.2.9+dfsg.orig.tar.x

[med-svn] [raxml] annotated tag upstream/8.2.9+dfsg created (now cb90030)

2016-08-16 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a change to annotated tag upstream/8.2.9+dfsg in repository raxml. at cb90030 (tag) tagging f2c430abe2bdfe085987898666ffe7560bb2c7d5 (commit) replaces upstream/8.2.8+dfsg tagged by Andreas Tille

[med-svn] [raxml] branch upstream updated (17f575c -> f2c430a)

2016-08-16 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a change to branch upstream in repository raxml. from 17f575c Imported Upstream version 8.2.8+dfsg new f2c430a Imported Upstream version 8.2.9+dfsg The 1 revisions listed above as "new" are entirel

[med-svn] [raxml] branch pristine-tar updated (e8cd116 -> 8f113de)

2016-08-16 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a change to branch pristine-tar in repository raxml. from e8cd116 pristine-tar data for raxml_8.2.8+dfsg.orig.tar.xz new 8f113de pristine-tar data for raxml_8.2.9+dfsg.orig.tar.xz The 1 revisions l

[med-svn] [raxml] 01/03: Imported Upstream version 8.2.9+dfsg

2016-08-16 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository raxml. commit f2c430abe2bdfe085987898666ffe7560bb2c7d5 Author: Andreas Tille Date: Tue Aug 16 14:08:05 2016 +0200 Imported Upstream version 8.2.9+dfsg --- README

[med-svn] [raxml] 02/03: Merge tag 'upstream/8.2.9+dfsg'

2016-08-16 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository raxml. commit 1bbe58648e76fb55fdf7aa0e9889379884e55c88 Merge: 1c31756 f2c430a Author: Andreas Tille Date: Tue Aug 16 14:08:07 2016 +0200 Merge tag 'upstream/8.2.9+dfsg'

[med-svn] [raxml] 03/03: new upstream version, hardening=+all, -pie

2016-08-16 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository raxml. commit 62486d038146af6dae99f83b90dd893212c21883 Author: Andreas Tille Date: Tue Aug 16 14:31:26 2016 +0200 new upstream version, hardening=+all,-pie --- debian/c

[med-svn] [raxml] branch master updated (1c31756 -> 62486d0)

2016-08-16 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a change to branch master in repository raxml. from 1c31756 Verify that we can not gain better hardening new f2c430a Imported Upstream version 8.2.9+dfsg new 1bbe586 Merge tag 'upstream/8.

[med-svn] [cufflinks] branch master updated (f08a82d -> 94ac8af)

2016-08-16 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a change to branch master in repository cufflinks. from f08a82d Gianfranco Costamagna suggested to build against Debian packaged liblemon-dev - but this attempt failed. new 94ac8af Revert the attem

[med-svn] [cufflinks] branch use_debian_packaged_liblemon created (now 3a395d6)

2016-08-16 Thread Andreas Tille
This is an automated email from the git hooks/post-receive script. tille pushed a change to branch use_debian_packaged_liblemon in repository cufflinks. at 3a395d6 Drop a note that the attempt was not successful This branch includes the following new commits: new 3a395d6 Dr

[med-svn] [circlator] annotated tag upstream/1.3.0 created (now b0f2f3e)

2016-08-16 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif pushed a change to annotated tag upstream/1.3.0 in repository circlator. at b0f2f3e (tag) tagging cd946212b81d9b7e90ea717582b649e717811057 (commit) replaces upstream/1.2.1 tagged by Afif Elghraoui

[med-svn] [circlator] 04/07: Drop all patches - no longer required

2016-08-16 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif pushed a commit to branch master in repository circlator. commit d34111fec99357a4425c7bcfc7ab87f65456b8be Author: Afif Elghraoui Date: Mon Aug 15 20:56:34 2016 -0700 Drop all patches - no longer required * Up

[med-svn] [circlator] 01/01: pristine-tar data for circlator_1.3.0.orig.tar.gz

2016-08-16 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif pushed a commit to branch pristine-tar in repository circlator. commit 8ff1abce6888ccc4b1e0bf5da62fb88d642729e1 Author: Afif Elghraoui Date: Mon Aug 15 20:54:32 2016 -0700 pristine-tar data for circlator_1.3.0.orig.ta

[med-svn] [circlator] 03/07: Merge tag 'upstream/1.3.0'

2016-08-16 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif pushed a commit to branch master in repository circlator. commit 563d87d164dae4de6243ec836433011c89277378 Merge: 18c214d cd94621 Author: Afif Elghraoui Date: Mon Aug 15 20:54:34 2016 -0700 Merge tag 'upstream/1.3.0'

[med-svn] [circlator] 06/07: Build-depend on prodigal to run test suite

2016-08-16 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif pushed a commit to branch master in repository circlator. commit 652f7c79e605ad7dd050ba4651fe35693c88b004 Author: Afif Elghraoui Date: Mon Aug 15 22:00:57 2016 -0700 Build-depend on prodigal to run test suite --- deb

[med-svn] [circlator] branch master updated (f62822a -> 461ff2e)

2016-08-16 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif pushed a change to branch master in repository circlator. from f62822a releasing package circlator version 1.2.1-1 new 18c214d Remove code to support now unnecessary second tarball new cd94621 Imp

[med-svn] [circlator] branch pristine-tar updated (d7b2861 -> 8ff1abc)

2016-08-16 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif pushed a change to branch pristine-tar in repository circlator. from d7b2861 pristine-tar data for circlator_1.2.1.orig-bioassemblyrefinement.tar.gz new 8ff1abc pristine-tar data for circlator_1.3.0.orig.t