[med-svn] [python-pysam] 01/01: Package is lintian error and warning clean. Some lintian infos however

2014-12-09 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a commit to branch master in repository python-pysam. commit 4b558ecdb521c69db171c50d91735fcd2cf34cf3 Author: Jorge Soares Date: Tue Dec 9 09:27:31 2014 + Package is lintian error and warning

[med-svn] [python-pysam] branch master updated (345fdfa -> 4b558ec)

2014-12-09 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a change to branch master in repository python-pysam. from 345fdfa Add missing "provide python3-pysam" to changelog new 4b558ec Package is lintian error and warning clean. Some lintian inf

[med-svn] [iva] 01/01: Updated changelog with ITP number

2014-12-08 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a commit to branch master in repository iva. commit 9b2bdfb13fab47be52252fc49539bf342993e9aa Author: Jorge Soares Date: Mon Dec 8 14:15:36 2014 + Updated changelog with ITP number --- debian

[med-svn] [iva] branch master updated (93f8e41 -> 9b2bdfb)

2014-12-08 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a change to branch master in repository iva. from 93f8e41 Package builds perfectly and is completely lintian clean new 9b2bdfb Updated changelog with ITP number The 1 revisions listed abov

[med-svn] [iva] branch master updated (d0288d1 -> 93f8e41)

2014-12-08 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a change to branch master in repository iva. from d0288d1 changelog now changed to use new upstream new 93f8e41 Package builds perfectly and is completely lintian clean The 1 revisions lis

[med-svn] [iva] 01/01: Package builds perfectly and is completely lintian clean

2014-12-08 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a commit to branch master in repository iva. commit 93f8e4156a9cb2d15ffb605e1b914b68c9faf8ed Author: Jorge Soares Date: Mon Dec 8 12:51:35 2014 + Package builds perfectly and is completely

[med-svn] [iva] branch master updated (f37aa4f -> d0288d1)

2014-12-08 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a change to branch master in repository iva. from f37aa4f starting patches form scratch new d0288d1 changelog now changed to use new upstream The 1 revisions listed above as "new" are enti

[med-svn] [iva] 01/01: changelog now changed to use new upstream

2014-12-08 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a commit to branch master in repository iva. commit d0288d16b8fab970ec627a7f9933a708c5005453 Author: Jorge Soares Date: Mon Dec 8 11:25:31 2014 + changelog now changed to use new upstream

[med-svn] [iva] 01/01: pristine-tar data for iva_0.10.1.orig.tar.gz

2014-12-08 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a commit to branch pristine-tar in repository iva. commit da430635c6fb3757a684f5e2d5f5c9c11dee4553 Author: Jorge Soares Date: Mon Dec 8 08:43:29 2014 + pristine-tar data for iva_0.10.1

[med-svn] [iva] branch upstream updated (f46ec02 -> b7cc516)

2014-12-08 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a change to branch upstream in repository iva. from f46ec02 Imported Upstream version 0.10.0 adds b7cc516 Imported Upstream version 0.10.1 No new revisions were added by this update. Summa

[med-svn] [iva] branch pristine-tar updated (9327410 -> da43063)

2014-12-08 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a change to branch pristine-tar in repository iva. from 9327410 pristine-tar data for iva_0.10.0.orig.tar.gz new da43063 pristine-tar data for iva_0.10.1.orig.tar.gz The 1 revisions listed

[med-svn] [iva] 03/03: starting patches form scratch

2014-12-08 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a commit to branch master in repository iva. commit f37aa4f55c0087936dde43c80582d27d5ce4edfc Author: Jorge Soares Date: Mon Dec 8 11:19:59 2014 + starting patches form scratch --- debian/patches

[med-svn] [iva] branch master updated (a836751 -> f37aa4f)

2014-12-08 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a change to branch master in repository iva. from a836751 new upstream version of iva. Should fix tests not passing adds f46ec02 Imported Upstream version 0.10.0 new b7cc516 Import

[med-svn] [iva] 02/03: Merge tag 'upstream/0.10.1'

2014-12-08 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a commit to branch master in repository iva. commit 0c3ade402424bc5cc65ec03a06bc580c892e57e9 Merge: a836751 b7cc516 Author: Jorge Soares Date: Mon Dec 8 08:43:30 2014 + Merge tag 'upstream/0

[med-svn] [iva] 01/03: Imported Upstream version 0.10.1

2014-12-08 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a commit to branch master in repository iva. commit b7cc516243cc092d34ecb440a5eec1779eec6d8b Author: Jorge Soares Date: Mon Dec 8 08:43:27 2014 + Imported Upstream version 0.10.1 --- iva

[med-svn] [iva] 01/01: new upstream version of iva. Should fix tests not passing

2014-12-08 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a commit to branch master in repository iva. commit a8367517ba844fae8d05d1798ec0fc1481e31aec Author: Jorge Soares Date: Mon Dec 8 08:38:09 2014 + new upstream version of iva. Should fix tests not

[med-svn] [iva] branch master updated (3f2af1a -> a836751)

2014-12-08 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a change to branch master in repository iva. from 3f2af1a Package builds and is lintian clean, but some tests still failing new a836751 new upstream version of iva. Should fix tests not pa

[med-svn] [iva] 01/01: Package builds and is lintian clean, but some tests still failing

2014-12-07 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a commit to branch master in repository iva. commit 3f2af1ace4fdd15ddc83e3a04767fab722394b60 Author: Jorge Soares Date: Sun Dec 7 14:08:30 2014 + Package builds and is lintian clean, but some

[med-svn] [iva] branch master updated (1bac936 -> 3f2af1a)

2014-12-07 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a change to branch master in repository iva. from 1bac936 Some tests failing. If tests are not run as is the case on this commit, package builds and is lintian clean new 3f2af1a Package bu

[med-svn] [iva] 01/01: Some tests failing. If tests are not run as is the case on this commit, package builds and is lintian clean

2014-12-03 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a commit to branch master in repository iva. commit 1bac936f2f6f5e4b0f4ef27e1abdff9f4c67c7df Author: Jorge Soares Date: Wed Dec 3 16:32:02 2014 + Some tests failing. If tests are not run as is

[med-svn] [iva] branch master updated (100fa8d -> 1bac936)

2014-12-03 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a change to branch master in repository iva. from 100fa8d Not lintian clean, easy to fix (i think). Package builds new 1bac936 Some tests failing. If tests are not run as is the case on th

[med-svn] [python-pysam] branch master updated (f3cd9c5 -> 510caee)

2014-12-03 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a change to branch master in repository python-pysam. from f3cd9c5 Packages build fine. The test suite in tests/pysam_data/ doesnt seem to be complete. new 52d1968 resetting the test direc

[med-svn] [python-pysam] 01/01: Packages build fine. The test suite in tests/pysam_data/ doesnt seem to be complete.

2014-11-28 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a commit to branch master in repository python-pysam. commit f3cd9c5f268e10ca733bab588c700c0b98bedb90 Author: Jorge Soares Date: Fri Nov 28 15:58:47 2014 + Packages build fine. The test suite in

[med-svn] [python-pysam] branch master updated (8ffff39 -> f3cd9c5)

2014-11-28 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a change to branch master in repository python-pysam. from 839 cant seem to make run-noseX-tests excutable when installed new f3cd9c5 Packages build fine. The test suite in tests/pysam_

[med-svn] [python-pysam] 01/01: cant seem to make run-noseX-tests excutable when installed

2014-11-28 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a commit to branch master in repository python-pysam. commit 839b08e59f9d56cb270495e6b9753c9f5d84 Author: Jorge Soares Date: Fri Nov 28 15:04:22 2014 + cant seem to make run-noseX-tests

[med-svn] [python-pysam] branch master updated (0bcea41 -> 8ffff39)

2014-11-28 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a change to branch master in repository python-pysam. from 0bcea41 overriding autotest as there is nothing to test until pysam is installed. nose tests are now executables new 839 cant

[med-svn] [python-pysam] branch master updated (a66883d -> 0bcea41)

2014-11-28 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a change to branch master in repository python-pysam. from a66883d changed upstream source in copyright file. Tidy up of control file new b6bc00f tests are now python version dependent

[med-svn] [python-pysam] 01/03: tests are now python version dependent

2014-11-28 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a commit to branch master in repository python-pysam. commit b6bc00f823d34d58eb6fdfbd5de6c6d90384c5d1 Author: Jorge Soares Date: Fri Nov 28 13:53:54 2014 + tests are now python version dependent

[med-svn] [python-pysam] 02/03: now properly python version dependent test and hopefuly python-x.y-nose dependency will work

2014-11-28 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a commit to branch master in repository python-pysam. commit dd7215f8674b20485e01a5b35396a28b988a9993 Author: Jorge Soares Date: Fri Nov 28 13:55:22 2014 + now properly python version dependent

[med-svn] [python-pysam] 03/03: overriding autotest as there is nothing to test until pysam is installed. nose tests are now executables

2014-11-28 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a commit to branch master in repository python-pysam. commit 0bcea417b6081c57c7814fad331793b399dd9a55 Author: Jorge Soares Date: Fri Nov 28 14:26:44 2014 + overriding autotest as there is nothing

[med-svn] [python-pysam] 01/01: changed upstream source in copyright file. Tidy up of control file

2014-11-28 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a commit to branch master in repository python-pysam. commit a66883d755e629cf1d7c7ee01c7656451e47e424 Author: Jorge Soares Date: Fri Nov 28 13:09:53 2014 + changed upstream source in copyright

[med-svn] [python-pysam] branch master updated (4ed4a5d -> a66883d)

2014-11-28 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a change to branch master in repository python-pysam. from 4ed4a5d commented out all the overrides. 4 packages build fine. Tested installation on my mahcine and the test suite seems to work n

[med-svn] [python-pysam] 01/04: three packages lintian clean, but python3-pysam-tests is empty

2014-11-28 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a commit to branch master in repository python-pysam. commit 4c243cce32fc93f8e602243a6ee49520e1a971b0 Author: Jorge Soares Date: Fri Nov 28 10:11:05 2014 + three packages lintian clean, but

[med-svn] [python-pysam] 03/04: still trying to understand what is happening with the auto_test override;

2014-11-28 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a commit to branch master in repository python-pysam. commit fdc35794ea5e130544e9409bbfcdbaad7851ff8b Author: Jorge Soares Date: Fri Nov 28 12:51:43 2014 + still trying to understand what is

[med-svn] [python-pysam] 02/04: simplifying rules and adding install files for the python3 stuff

2014-11-28 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a commit to branch master in repository python-pysam. commit 26ad9da6220c36b58587980efe356b9e58609cc9 Author: Jorge Soares Date: Fri Nov 28 10:26:36 2014 + simplifying rules and adding install

[med-svn] [python-pysam] 04/04: commented out all the overrides. 4 packages build fine. Tested installation on my mahcine and the test suite seems to work

2014-11-28 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a commit to branch master in repository python-pysam. commit 4ed4a5d9cf47e420183ce366acd804be8a92e623 Author: Jorge Soares Date: Fri Nov 28 12:52:48 2014 + commented out all the overrides. 4

[med-svn] [python-pysam] branch master updated (0cdc10d -> 4ed4a5d)

2014-11-28 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a change to branch master in repository python-pysam. from 0cdc10d Merge tag 'upstream/0.8.1' new 4c243cc three packages lintian clean, but python3-pysam-tests is empty new 26ad9da

[med-svn] [python-pysam] 01/02: pristine-tar data for python-pysam_0.8.1.orig.tar.gz

2014-11-28 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a commit to branch pristine-tar in repository python-pysam. commit 3cd812085cf0967a023080f3fe8e55257f29c0f2 Author: Jorge Soares Date: Fri Nov 28 09:27:54 2014 + pristine-tar data for python

[med-svn] [python-pysam] branch pristine-tar updated (9ecf0bd -> ed8ee15)

2014-11-28 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a change to branch pristine-tar in repository python-pysam. from 9ecf0bd pristine-tar data for python-pysam_0.8.1.orig.tar.gz new 3cd8120 pristine-tar data for python-pysam_0.8.1.orig.tar.g

[med-svn] [python-pysam] 02/02: pristine-tar data for python-pysam_0.8.1.orig.tar.gz

2014-11-28 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a commit to branch pristine-tar in repository python-pysam. commit ed8ee159cc2d52a6553bcb391ac1893aa0c6dd9e Author: Jorge Soares Date: Fri Nov 28 09:29:23 2014 + pristine-tar data for python

[med-svn] [python-pysam] branch upstream updated (3a45c2d -> 5128bf9)

2014-11-28 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a change to branch upstream in repository python-pysam. from 3a45c2d Imported Upstream version 0.8.1 new e061ec4 Imported Upstream version 0.8.1 new 5128bf9 Imported Upstream vers

[med-svn] [python-pysam] 03/03: Merge tag 'upstream/0.8.1'

2014-11-28 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a commit to branch master in repository python-pysam. commit 0cdc10d6a94a05940ab7687c6d3851fe6adc5020 Merge: 95bb6c1 5128bf9 Author: Jorge Soares Date: Fri Nov 28 09:29:24 2014 + Merge tag

[med-svn] [python-pysam] 02/03: Imported Upstream version 0.8.1

2014-11-28 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a commit to branch master in repository python-pysam. commit 5128bf9aedea461752f83632670e1676426bc528 Author: Jorge Soares Date: Fri Nov 28 09:29:20 2014 + Imported Upstream version 0.8.1

[med-svn] [python-pysam] branch master updated (95bb6c1 -> 0cdc10d)

2014-11-28 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a change to branch master in repository python-pysam. from 95bb6c1 watch file set to look at git repository rather than pypi adds 3a45c2d Imported Upstream version 0.8.1 new e061ec4

[med-svn] [python-pysam] branch master updated (5eb39c8 -> 95bb6c1)

2014-11-28 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a change to branch master in repository python-pysam. from 5eb39c8 Added the tests directory as I think this will solve all the non building problems new 95bb6c1 watch file set to look at

[med-svn] [python-pysam] 01/01: watch file set to look at git repository rather than pypi

2014-11-28 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a commit to branch master in repository python-pysam. commit 95bb6c141a048d49d1688d383963ba6450e84a08 Author: Jorge Soares Date: Fri Nov 28 09:23:56 2014 + watch file set to look at git

[med-svn] [python-pysam] branch master updated (f579596 -> 5eb39c8)

2014-11-28 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a change to branch master in repository python-pysam. from f579596 concluding merge new 5eb39c8 Added the tests directory as I think this will solve all the non building problems The 1 re

[med-svn] [python-pysam] 01/01: Imported Upstream version 0.8.1

2014-11-27 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a commit to branch upstream in repository python-pysam. commit 3a45c2d0bee0552cff9944988f8e6f4e484b5c51 Author: Jorge Soares Date: Thu Nov 27 16:40:19 2014 + Imported Upstream version 0.8.1

[med-svn] [python-pysam] 01/01: pristine-tar data for python-pysam_0.8.1.orig.tar.gz

2014-11-27 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a commit to branch pristine-tar in repository python-pysam. commit 9ecf0bdea3367852d09bff6043114ae4fd09e869 Author: Jorge Soares Date: Thu Nov 27 16:40:21 2014 + pristine-tar data for python

[med-svn] [python-pysam] branch upstream updated (b4fcfcb -> 3a45c2d)

2014-11-27 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a change to branch upstream in repository python-pysam. from b4fcfcb Imported Upstream version 0.8.1 new 3a45c2d Imported Upstream version 0.8.1 The 1 revisions listed above as "new" are e

[med-svn] [python-pysam] 02/02: concluding merge

2014-11-27 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a commit to branch master in repository python-pysam. commit f579596a1154ba38b2b3e1d92cb0d9e1319af530 Merge: 1f2a975 91b6160 Author: Jorge Soares Date: Thu Nov 27 16:57:50 2014 + concluding merge

[med-svn] [python-pysam] branch pristine-tar updated (dc285bc -> 9ecf0bd)

2014-11-27 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a change to branch pristine-tar in repository python-pysam. from dc285bc pristine-tar data for python-pysam_0.8.1.orig.tar.gz new 9ecf0bd pristine-tar data for python-pysam_0.8.1.orig.tar.g

[med-svn] [python-pysam] branch master updated (91b6160 -> f579596)

2014-11-27 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a change to branch master in repository python-pysam. from 91b6160 removing undeed files for the time being new 1f2a975 package builds but I dont understand whats happening in the rule dh_

[med-svn] [python-pysam] branch master updated (0787fde -> 91b6160)

2014-11-26 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a change to branch master in repository python-pysam. from 0787fde adding debian folder once again after pristine tar deleted it new 37545b8 Python3 support in place, but package not build

[med-svn] [python-pysam] 02/02: removing undeed files for the time being

2014-11-26 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a commit to branch master in repository python-pysam. commit 91b6160ca0be906eb99387d0e8a37ca4ebedc835 Author: Jorge Soares Date: Wed Nov 26 17:12:01 2014 + removing undeed files for the time

[med-svn] [python-pysam] 01/02: Python3 support in place, but package not building yet

2014-11-26 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a commit to branch master in repository python-pysam. commit 37545b8b05a9c49e6442279a72c349642fb17e0a Author: Jorge Soares Date: Wed Nov 26 17:11:12 2014 + Python3 support in place, but package

[med-svn] [python-pysam] branch upstream updated (91878cb -> b4fcfcb)

2014-11-26 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a change to branch upstream in repository python-pysam. from 91878cb Imported Upstream version 0.8.1 adds 14f241c Merge tag 'upstream/0.8.1' adds 5c12015 lost debian folder when imp

[med-svn] [python-pysam] 02/03: Merge tag 'upstream/0.8.1'

2014-11-26 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a commit to branch master in repository python-pysam. commit 5713a6cdb04b1d054b8926d7f7c5c38cf265e3e0 Merge: 2632641 b4fcfcb Author: Jorge Soares Date: Wed Nov 26 14:54:23 2014 + Merge tag

[med-svn] [python-pysam] 01/01: pristine-tar data for python-pysam_0.8.1.orig.tar.gz

2014-11-26 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a commit to branch pristine-tar in repository python-pysam. commit dc285bc792f72b000d206824521602807d34f03c Author: Jorge Soares Date: Wed Nov 26 14:54:22 2014 + pristine-tar data for python

[med-svn] [python-pysam] branch pristine-tar updated (f28d9db -> dc285bc)

2014-11-26 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a change to branch pristine-tar in repository python-pysam. from f28d9db pristine-tar data for python-pysam_0.8.1.orig.tar.gz new dc285bc pristine-tar data for python-pysam_0.8.1.orig.tar.g

[med-svn] [python-pysam] branch master updated (2632641 -> 0787fde)

2014-11-26 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a change to branch master in repository python-pysam. from 2632641 Adding lib source code. Probably won't be needed new b4fcfcb Imported Upstream version 0.8.1 new 5713a6c Merge t

[med-svn] [python-pysam] 02/03: Adding individual files form new upstream

2014-11-26 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a commit to branch master in repository python-pysam. commit 62a776ad93968d9fec095435340e3ce975e5e4e2 Author: Jorge Soares Date: Wed Nov 26 11:34:32 2014 + Adding individual files form new

[med-svn] [python-pysam] branch master updated (02d618c -> 2632641)

2014-11-26 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a change to branch master in repository python-pysam. from 02d618c Copied the new source to the package new fad9a66 Deleting files that are no longer used by upstream new 62a776a

[med-svn] [python-pysam] branch master updated (5c12015 -> 02d618c)

2014-11-26 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a change to branch master in repository python-pysam. from 5c12015 lost debian folder when importing pristine-tar, so reuploading from previous commit new 02d618c Copied the new source to

[med-svn] [python-pysam] 01/01: Copied the new source to the package

2014-11-26 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a commit to branch master in repository python-pysam. commit 02d618c05c9639a629705ee97f0165b63688eb78 Author: Jorge Soares Date: Wed Nov 26 11:27:34 2014 + Copied the new source to the package

[med-svn] [python-pysam] branch master updated (14f241c -> 5c12015)

2014-11-26 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a change to branch master in repository python-pysam. from 14f241c Merge tag 'upstream/0.8.1' new 5c12015 lost debian folder when importing pristine-tar, so reuploading from previous commi

[med-svn] [python-pysam] 01/01: lost debian folder when importing pristine-tar, so reuploading from previous commit

2014-11-26 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a commit to branch master in repository python-pysam. commit 5c120157562fe18b9ceedbfd7b8bd435dbb3d03b Author: Jorge Soares Date: Wed Nov 26 11:19:37 2014 + lost debian folder when importing

[med-svn] [python-pysam] 01/01: pristine-tar data for python-pysam_0.8.1.orig.tar.gz

2014-11-26 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a commit to branch pristine-tar in repository python-pysam. commit f28d9dbc422fb2a0133c9e0407905219ff6eef70 Author: Jorge Soares Date: Wed Nov 26 11:06:35 2014 + pristine-tar data for python

[med-svn] [python-pysam] branch pristine-tar updated (cfbfe1e -> f28d9db)

2014-11-26 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a change to branch pristine-tar in repository python-pysam. from cfbfe1e pristine-tar data for python-pysam_0.8.0.orig.tar.gz new f28d9db pristine-tar data for python-pysam_0.8.1.orig.tar.g

[med-svn] [python-pysam] branch upstream updated (547982f -> 91878cb)

2014-11-26 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a change to branch upstream in repository python-pysam. from 547982f Imported Upstream version 0.8.0 adds 54ce4d5 Cleanup changelog from never released versions; move git repository and sou

[med-svn] [python-pysam] 02/02: Merge tag 'upstream/0.8.1'

2014-11-26 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a commit to branch master in repository python-pysam. commit 14f241c4e1fc7c002f3e6d5253263968c81bd006 Merge: 3d2e27b 91878cb Author: Jorge Soares Date: Wed Nov 26 11:06:35 2014 + Merge tag

[med-svn] [python-pysam] branch master updated (3d2e27b -> 14f241c)

2014-11-26 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a change to branch master in repository python-pysam. from 3d2e27b starting to implement python 3 support new 91878cb Imported Upstream version 0.8.1 new 14f241c Merge tag 'upstre

[med-svn] [python-pysam] branch master updated (867b474 -> 3d2e27b)

2014-11-26 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a change to branch master in repository python-pysam. from 867b474 In case we try to build with Git checkout which does not contain Cython generated files check for these files before trying to move

[med-svn] [python-pysam] 01/01: starting to implement python 3 support

2014-11-26 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a commit to branch master in repository python-pysam. commit 3d2e27b2cf8032c41ad5741c66faad6bd5666bdc Author: Jorge Soares Date: Wed Nov 26 10:56:08 2014 + starting to implement python 3 support

[med-svn] [iva] branch master updated (fb97d31 -> 100fa8d)

2014-11-24 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a change to branch master in repository iva. from fb97d31 removed auto_build override new 100fa8d Not lintian clean, easy to fix (i think). Package builds The 1 revisions listed above as "

[med-svn] [iva] 01/01: Not lintian clean, easy to fix (i think). Package builds

2014-11-24 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a commit to branch master in repository iva. commit 100fa8d2700e73131fdb2bccf9593fbd2490970b Author: Jorge Soares Date: Mon Nov 24 17:27:27 2014 + Not lintian clean, easy to fix (i think

[med-svn] [iva] 02/02: removed auto_build override

2014-11-24 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a commit to branch master in repository iva. commit fb97d31bc670a1ddae6f4855e16d54548c24b612 Author: Jorge Soares Date: Mon Nov 24 12:39:58 2014 + removed auto_build override --- debian/rules

[med-svn] [iva] 01/02: reinstating dh_auto_clean and added dirs to ignore

2014-11-24 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a commit to branch master in repository iva. commit 4a5bac3e6c2d984d8f7cb2a1ebe940946ca96e37 Author: Jorge Soares Date: Mon Nov 24 12:38:15 2014 + reinstating dh_auto_clean and added dirs to

[med-svn] [iva] branch master updated (54fd8b5 -> fb97d31)

2014-11-24 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a change to branch master in repository iva. from 54fd8b5 changes to rules file as suggested by Piotr new 4a5bac3 reinstating dh_auto_clean and added dirs to ignore new fb97d31 re

[med-svn] [iva] 01/01: changes to rules file as suggested by Piotr

2014-11-24 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a commit to branch master in repository iva. commit 54fd8b594dab0d94c9f5d5f71970229b668cfae0 Author: Jorge Soares Date: Mon Nov 24 12:29:52 2014 + changes to rules file as suggested by Piotr

[med-svn] [iva] branch master updated (cea28fc -> 54fd8b5)

2014-11-24 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a change to branch master in repository iva. from cea28fc applied quilt patches successfuly. Sitll issues with pysam new 54fd8b5 changes to rules file as suggested by Piotr The 1 revisions

[med-svn] [iva] 01/01: pristine-tar data for iva_0.10.0.orig.tar.gz

2014-11-24 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a commit to branch pristine-tar in repository iva. commit 9327410cccd533792e3bd7a68476ead6d64805c4 Author: Jorge Soares Date: Fri Nov 21 17:19:58 2014 + pristine-tar data for iva_0.10.0

[med-svn] [iva] branch master updated (60e611c -> cea28fc)

2014-11-24 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a change to branch master in repository iva. from 60e611c managed to inject local package, but build fails due to incompatibility python-pysam and iva is python3 new cea28fc applied quilt

[med-svn] [iva] branch upstream updated (c022089 -> f46ec02)

2014-11-24 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a change to branch upstream in repository iva. from c022089 Imported Upstream version 0.10.0 new f46ec02 Imported Upstream version 0.10.0 The 1 revisions listed above as "new" are entirely

[med-svn] [iva] branch pristine-tar updated (6434b38 -> 9327410)

2014-11-24 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a change to branch pristine-tar in repository iva. from 6434b38 pristine-tar data for iva_0.10.0.orig.tar.gz new 9327410 pristine-tar data for iva_0.10.0.orig.tar.gz The 1 revisions listed

[med-svn] [iva] 01/01: Imported Upstream version 0.10.0

2014-11-24 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a commit to branch upstream in repository iva. commit f46ec02b60594f324c931d0de8142a13a12d8c76 Author: Jorge Soares Date: Fri Nov 21 17:19:57 2014 + Imported Upstream version 0.10.0 -- Alioth&#

[med-svn] [iva] 01/01: applied quilt patches successfuly. Sitll issues with pysam

2014-11-24 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a commit to branch master in repository iva. commit cea28fcbe4a9e0fa8e3eca0fcf20d90b739ada8e Author: Jorge Soares Date: Mon Nov 24 11:22:48 2014 + applied quilt patches successfuly. Sitll issues

[med-svn] [iva] branch pristine-tar created (now 6434b38)

2014-11-21 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a change to branch pristine-tar in repository iva. at 6434b38 pristine-tar data for iva_0.10.0.orig.tar.gz This branch includes the following new commits: new 6434b38 pristine-tar data

[med-svn] [iva] branch upstream created (now c022089)

2014-11-21 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a change to branch upstream in repository iva. at c022089 Imported Upstream version 0.10.0 No new revisions were added by this update. -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.d

[med-svn] [iva] branch master updated (d4e5bc4 -> 60e611c)

2014-11-21 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a change to branch master in repository iva. from d4e5bc4 slight confusion with the patches directory new 60e611c managed to inject local package, but build fails due to incompatibility py

[med-svn] [iva] 01/01: managed to inject local package, but build fails due to incompatibility python-pysam and iva is python3

2014-11-21 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a commit to branch master in repository iva. commit 60e611cc5c08fd988f47cf3bc4b7d0599c60fb14 Author: Jorge Soares Date: Fri Nov 21 17:14:40 2014 + managed to inject local package, but build fails

[med-svn] [iva] branch master updated (81bfc20 -> d4e5bc4)

2014-11-21 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a change to branch master in repository iva. from 81bfc20 patch to remove fastaq dependency from setup.py. Leaving this dependency to be fullfilled by Debian new d4e5bc4 slight confusion w

[med-svn] [iva] branch master updated (cd6e525 -> 81bfc20)

2014-11-21 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a change to branch master in repository iva. from cd6e525 applied delay patches new 81bfc20 patch to remove fastaq dependency from setup.py. Leaving this dependency to be fullfilled by Deb

[med-svn] [iva] branch master updated (ce00049 -> cd6e525)

2014-11-21 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a change to branch master in repository iva. from ce00049 added proper changelog new cd6e525 applied delay patches The 1 revisions listed above as "new" are entirely new to this repository

[med-svn] [iva] 01/01: applied delay patches

2014-11-21 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a commit to branch master in repository iva. commit cd6e5252e3c3ab8d69805ca511dd15aa94407a67 Author: Jorge Soares Date: Fri Nov 21 10:46:24 2014 + applied delay patches --- debian/control

[med-svn] [kmc] 01/01: changed libboost dependency to be equal or greater to the first boost version known to support kmc

2014-11-21 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a commit to branch master in repository kmc. commit b40de03605bc13a236863a79b08413b799136a61 Author: Jorge Soares Date: Fri Nov 21 09:57:23 2014 + changed libboost dependency to be equal or

[med-svn] [kmc] branch master updated (46094e0 -> b40de03)

2014-11-21 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a change to branch master in repository kmc. from 46094e0 removed boilerplate stuff form copyroght and added proper author information new b40de03 changed libboost dependency to be equal o

[med-svn] [fastaq] branch master updated (08d3719 -> 86db77e)

2014-11-21 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a change to branch master in repository fastaq. from 08d3719 changed UNRELEASED to experimental new 86db77e removed .pc directory from debian package The 1 revisions listed above as "new"

[med-svn] [fastaq] 01/01: removed .pc directory from debian package

2014-11-21 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a commit to branch master in repository fastaq. commit 86db77ee6baa479f5bc2e2a4052ebb6051b5d038 Author: Jorge Soares Date: Fri Nov 21 09:39:07 2014 + removed .pc directory from debian package

[med-svn] [fastaq] branch master updated (7466ab2 -> 08d3719)

2014-11-19 Thread Jorge Soares
This is an automated email from the git hooks/post-receive script. jssoares-guest pushed a change to branch master in repository fastaq. from 7466ab2 now proper manpages.lintian clean new 08d3719 changed UNRELEASED to experimental The 1 revisions listed above as "new" are enti

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