Andreas Tille pushed to branch master at Debian Med / python-bx
Commits: b0b0b724 by Andreas Tille at 2024-04-15T10:08:34+02:00 Fix import statement s/cookbook/bx.cookbook/ - - - - - cfbc7fe7 by Andreas Tille at 2024-04-15T10:09:48+02:00 Psyco is only available for Python <= 2.6 - - - - - fc7241cb by Andreas Tille at 2024-04-15T10:10:11+02:00 routine-update: Standards-Version: 4.7.0 - - - - - 2214ed5b by Andreas Tille at 2024-04-15T10:15:30+02:00 routine-update: Ready to upload to unstable - - - - - 5 changed files: - debian/changelog - debian/control - + debian/patches/fix_import_cookbook.patch - + debian/patches/no_psyco.patch - debian/patches/series Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,13 @@ +python-bx (0.11.0-4) unstable; urgency=medium + + * Team upload. + * Fix import statement s/cookbook/bx.cookbook/ + * Psyco is only available for Python <= 2.6 + Closes: #1068996 + * Standards-Version: 4.7.0 (routine-update) + + -- Andreas Tille <ti...@debian.org> Mon, 15 Apr 2024 10:11:31 +0200 + python-bx (0.11.0-3) unstable; urgency=medium * Added patch to correct an include. Closes: #1066569 ===================================== debian/control ===================================== @@ -16,7 +16,7 @@ Build-Depends: debhelper-compat (= 13), python3-pytest-cython <!nocheck>, python3-numpy <!nocheck>, cython3 -Standards-Version: 4.6.2 +Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/python-bx Vcs-Git: https://salsa.debian.org/med-team/python-bx.git Homepage: https://github.com/bxlab/bx-python ===================================== debian/patches/fix_import_cookbook.patch ===================================== @@ -0,0 +1,16 @@ +Description: Fix import statement s/cookbook/bx.cookbook/ +Bug-Debian: https://bugs.debian.org/1068996 +Author: Andreas Tille <ti...@debian.org> +Last-Updat: Mon, 15 Apr 2024 08:27:39 +0200 + +--- a/scripts/maf_tile_2.py ++++ b/scripts/maf_tile_2.py +@@ -31,7 +31,7 @@ usage: %prog list,of,species,to,keep seq + + import sys + +-from cookbook import doc_optparse ++from bx.cookbook import doc_optparse + + import bx.align as align + import bx.align.maf as maf ===================================== debian/patches/no_psyco.patch ===================================== @@ -0,0 +1,20 @@ +Description: psyco is only available for Python <= 2.6 +Bug-Debian: https://bugs.debian.org/1068996 +Author: Andreas Tille <ti...@debian.org> +Last-Updat: Mon, 15 Apr 2024 08:27:39 +0200 + +--- a/scripts/maf_word_frequency.py ++++ b/scripts/maf_word_frequency.py +@@ -12,12 +12,8 @@ usage: %prog n < maf_file + import string + import sys + +-import psyco +- + from bx.align import maf + +-psyco.profile() +- + + def __main__(): + motif_len = int(sys.argv[1]) ===================================== debian/patches/series ===================================== @@ -3,3 +3,5 @@ post-install-testing pytest8 shebang.patch fix_BIN_OFFSETS_MAX +fix_import_cookbook.patch +no_psyco.patch View it on GitLab: https://salsa.debian.org/med-team/python-bx/-/compare/c11ebb53f0cd21910117267f5d44d8270a7202c7...2214ed5bc1ca40d50972672132789fd5935f0421 -- View it on GitLab: https://salsa.debian.org/med-team/python-bx/-/compare/c11ebb53f0cd21910117267f5d44d8270a7202c7...2214ed5bc1ca40d50972672132789fd5935f0421 You're receiving this email because of your account on salsa.debian.org.
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