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commit fb8ea7c555f7f22d48c9ba0d3e3f5ebd0611c7c4 Author: Kevin Murray <s...@kdmurray.id.au> Date: Mon Apr 27 16:59:51 2015 +1000 Patch to fix spelling of specified --- debian/patches/0002-Fix-typos-in-binary.patch | 35 +++++++++++++++++++++++++++ debian/patches/series | 1 + 2 files changed, 36 insertions(+) diff --git a/debian/patches/0002-Fix-typos-in-binary.patch b/debian/patches/0002-Fix-typos-in-binary.patch new file mode 100644 index 0000000..e3f86d1 --- /dev/null +++ b/debian/patches/0002-Fix-typos-in-binary.patch @@ -0,0 +1,35 @@ +From: Kevin Murray <s...@kdmurray.id.au> +Date: Mon, 27 Apr 2015 16:59:32 +1000 +Subject: Fix typos in binary + +--- + src/prob.c | 2 +- + src/scythe.c | 2 +- + 2 files changed, 2 insertions(+), 2 deletions(-) + +diff --git a/src/prob.c b/src/prob.c +index 8bb3a70..adbf4a3 100644 +--- a/src/prob.c ++++ b/src/prob.c +@@ -28,7 +28,7 @@ float *qual_to_probs(const char *qual, quality_type q_type) { + for (i = 0; i < n; i++) { + q = (char) qual[i]-quality_contants[q_type][Q_OFFSET]; + if (q < quality_contants[q_type][Q_MIN] || q > quality_contants[q_type][Q_MAX]) { +- fprintf(stderr, "Base quality out of range for specifed quality type (%d): %d\n", q_type, q); ++ fprintf(stderr, "Base quality out of range for specified quality type (%d): %d\n", q_type, q); + exit(EXIT_FAILURE); + } + if (q_type == SOLEXA) { +diff --git a/src/scythe.c b/src/scythe.c +index 5952a57..5ef5dc3 100644 +--- a/src/scythe.c ++++ b/src/scythe.c +@@ -228,7 +228,7 @@ int main(int argc, char *argv[]) { + seq = kseq_init(fp); + + /* Loop through entire sequence file. Write trimmed sequences to +- file (or stdout), and record matches in a match file if specifed. ++ file (or stdout), and record matches in a match file if specified. + */ + while ((l = kseq_read(seq)) >= 0) { + shift = -1; diff --git a/debian/patches/series b/debian/patches/series index d4b8d64..f51dd92 100644 --- a/debian/patches/series +++ b/debian/patches/series @@ -1 +1,2 @@ 0001-Makefile-cleaning-for-debian.patch +0002-Fix-typos-in-binary.patch -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/scythe.git _______________________________________________ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit