[med-svn] [SCM] fastx-toolkit branch, master, updated. upstream/0.0.13-6-gcc97956

2011-04-14 Thread Charles Plessy
The following commit has been merged in the master branch: commit cc97956833c8b93695e5b7ed45a2b87b1654e79e Author: Charles Plessy ple...@debian.org Date: Thu Apr 14 11:25:04 2011 +0900 Uploaded version 0.0.13-1 after adding missing build dep and polishing a bit. diff --git a/DRAFT b/DRAFT

[med-svn] [SCM] fastx-toolkit branch, meta, created. 29442f8d990ea6d1abd6c41cc94103e13637d4b9

2011-04-14 Thread Charles Plessy
The branch, meta has been created at 29442f8d990ea6d1abd6c41cc94103e13637d4b9 (commit) - Shortlog commit 29442f8d990ea6d1abd6c41cc94103e13637d4b9 Author: Charles Plessy ple...@debian.org Date: Thu Apr 14 15:46:56 2011 +0900

[med-svn] [SCM] fastx-toolkit annotated tag, debian/0.0.13-1, created. debian/0.0.13-1

2011-04-14 Thread Charles Plessy
The annotated tag, debian/0.0.13-1 has been created at c5de0c53125d6ce92320bcda81b575d323297c91 (tag) tagging cc97956833c8b93695e5b7ed45a2b87b1654e79e (commit) replaces upstream/0.0.13 tagged by Charles Plessy on Thu Apr 14 15:45:54 2011 +0900 - Shortlog

[med-svn] [SCM] BEDtools branch, master, updated. upstream/2.11.1-35-g658ae44

2011-04-14 Thread Charles Plessy
The following commit has been merged in the master branch: commit b6cc7404d7b2676f6edda7e67ab1cec0d4578556 Merge: 7f5076cf9f5cfe18f2fa5cbb7662fd2a87357cfc ae943897cb533691a122a7e430ee6b4ac810c1f9 Author: Charles Plessy ple...@debian.org Date: Thu Apr 14 16:03:02 2011 +0900 Merge commit

[med-svn] r6551 - trunk/packages/figtree/tags

2011-04-14 Thread Andreas Tille
Author: tille Date: 2011-04-14 07:48:58 + (Thu, 14 Apr 2011) New Revision: 6551 Added: trunk/packages/figtree/tags/1.3.1-1/ Log: Tagged 1.3.1-1 ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org

[med-svn] [Debian Wiki] Update of DebianMedTodo by AndreasTille

2011-04-14 Thread Debian Wiki
Dear Wiki user, You have subscribed to a wiki page or wiki category on Debian Wiki for change notification. The DebianMedTodo page has been changed by AndreasTille: http://wiki.debian.org/DebianMedTodo?action=diffrev1=34rev2=35 Comment: Help Debian Med with social media == Users == +

[med-svn] r6552 - trunk/packages/gnumed-server/trunk/debian

2011-04-14 Thread Andreas Tille
Author: tille Date: 2011-04-14 08:24:29 + (Thu, 14 Apr 2011) New Revision: 6552 Modified: trunk/packages/gnumed-server/trunk/debian/changelog trunk/packages/gnumed-server/trunk/debian/control Log: New upstream version Modified: trunk/packages/gnumed-server/trunk/debian/changelog

[med-svn] r6553 - trunk/packages/gnumed-client/trunk/debian

2011-04-14 Thread Andreas Tille
Author: tille Date: 2011-04-14 09:01:00 + (Thu, 14 Apr 2011) New Revision: 6553 Modified: trunk/packages/gnumed-client/trunk/debian/changelog Log: New upstream version Modified: trunk/packages/gnumed-client/trunk/debian/changelog

[med-svn] r6557 - trunk/packages/cdbfasta/trunk/debian

2011-04-14 Thread Andreas Tille
Author: tille Date: 2011-04-14 17:54:48 + (Thu, 14 Apr 2011) New Revision: 6557 Modified: trunk/packages/cdbfasta/trunk/debian/control Log: Team maintenance in Debian Med team Modified: trunk/packages/cdbfasta/trunk/debian/control

[med-svn] r6558 - trunk/packages/cdbfasta/trunk/debian

2011-04-14 Thread Andreas Tille
Author: tille Date: 2011-04-14 18:02:08 + (Thu, 14 Apr 2011) New Revision: 6558 Modified: trunk/packages/cdbfasta/trunk/debian/control Log: Turn the one liner in something which could be regarded as a long description (even if I'm not happy about it). The text was drawn from the README.

[med-svn] r6560 - trunk/packages/cdbfasta/trunk/debian

2011-04-14 Thread Andreas Tille
Author: tille Date: 2011-04-14 18:04:51 + (Thu, 14 Apr 2011) New Revision: 6560 Removed: trunk/packages/cdbfasta/trunk/debian/README.source Log: Removed README.source because this becomes obvious when reading debian/rules. Deleted: trunk/packages/cdbfasta/trunk/debian/README.source

[med-svn] r6562 - trunk/packages/cdbfasta/trunk/debian

2011-04-14 Thread Andreas Tille
Author: tille Date: 2011-04-14 18:07:07 + (Thu, 14 Apr 2011) New Revision: 6562 Modified: trunk/packages/cdbfasta/trunk/debian/control Log: Polics 3.9.2 was just released - so use this as Standards-Version Modified: trunk/packages/cdbfasta/trunk/debian/control

[med-svn] r6563 - trunk/packages/cdbfasta/trunk/debian

2011-04-14 Thread Andreas Tille
Author: tille Date: 2011-04-14 18:08:43 + (Thu, 14 Apr 2011) New Revision: 6563 Modified: trunk/packages/cdbfasta/trunk/debian/compat trunk/packages/cdbfasta/trunk/debian/control Log: Stable (and probaly several Ubuntu versions) are featuring debhelper 8 - so just use it Modified:

[med-svn] r6564 - trunk/packages/cdbfasta/trunk/debian

2011-04-14 Thread Andreas Tille
Author: tille Date: 2011-04-14 20:05:37 + (Thu, 14 Apr 2011) New Revision: 6564 Modified: trunk/packages/cdbfasta/trunk/debian/control Log: Added missing Build-Depends: zlib (using pbuilder usually uncovers such issues) Modified: trunk/packages/cdbfasta/trunk/debian/control

[med-svn] [SCM] mricron branch, master, updated. upstream/0.20101102.1_dfsg.1-50-g772ab6d

2011-04-14 Thread Michael Hanke
The following commit has been merged in the master branch: commit 4f35f3ba9d67cfe8ab2b2ddd0c30ddfa44ba026b Author: Michael Hanke michael.ha...@gmail.com Date: Thu Apr 14 15:52:57 2011 -0400 Lazarus compat patch only needed for backports. diff --git a/debian/changelog b/debian/changelog

[med-svn] [SCM] mricron branch, master, updated. upstream/0.20101102.1_dfsg.1-50-g772ab6d

2011-04-14 Thread Michael Hanke
The following commit has been merged in the master branch: commit 772ab6d79445d0b55243007b44204bac01a85d88 Author: Michael Hanke michael.ha...@gmail.com Date: Thu Apr 14 16:17:49 2011 -0400 fp-utils dependency for 'fpcres' diff --git a/debian/control b/debian/control index eccd224..5ddaca4

[med-svn] [SCM] mricron tag, debian/0.20110413.1_dfsg.1-1, created. upstream/0.20101102.1_dfsg.1-50-g772ab6d

2011-04-14 Thread Michael Hanke
The tag, debian/0.20110413.1_dfsg.1-1 has been created at 772ab6d79445d0b55243007b44204bac01a85d88 (commit) - Shortlog commit 772ab6d79445d0b55243007b44204bac01a85d88 Author: Michael Hanke michael.ha...@gmail.com Date: Thu

[med-svn] [SCM] mricron annotated tag, upstream/0.20110413.1_dfsg.1, created. upstream/0.20110413.1_dfsg.1

2011-04-14 Thread Michael Hanke
The annotated tag, upstream/0.20110413.1_dfsg.1 has been created at 00d6f22f2587038bc9aa982c6b6c10a768dc20b9 (tag) tagging d40f1b3d53b17e5979e6151a3d5232dad91e5343 (commit) replaces upstream/0.20101102.1_dfsg.1 tagged by Michael Hanke on Thu Apr 14 13:05:41 2011 -0400 -

[med-svn] r6566 - trunk/packages/cdbfasta/trunk/debian

2011-04-14 Thread Andreas Tille
Author: tille Date: 2011-04-14 20:21:17 + (Thu, 14 Apr 2011) New Revision: 6566 Modified: trunk/packages/cdbfasta/trunk/debian/dirs trunk/packages/cdbfasta/trunk/debian/rules Log: Use just builded binaries as input for html2man instead of randomly installed programs on local machine;

[med-svn] r6568 - in trunk/packages/cdbfasta/trunk/debian: . patches

2011-04-14 Thread Andreas Tille
Author: tille Date: 2011-04-14 20:32:41 + (Thu, 14 Apr 2011) New Revision: 6568 Added: trunk/packages/cdbfasta/trunk/debian/install Removed: trunk/packages/cdbfasta/trunk/debian/patches/add-install-target-to-makefile Log: Use debian/install rather than a patch to upstream Makefile

[med-svn] r6569 - trunk/packages/cdbfasta/trunk/debian

2011-04-14 Thread Andreas Tille
Author: tille Date: 2011-04-14 20:33:20 + (Thu, 14 Apr 2011) New Revision: 6569 Modified: trunk/packages/cdbfasta/trunk/debian/dirs Log: Last change makes creating /usr/bin in advance unnecessary Modified: trunk/packages/cdbfasta/trunk/debian/dirs

[med-svn] r6570 - trunk/packages/cdbfasta/trunk/debian/patches

2011-04-14 Thread Andreas Tille
Author: tille Date: 2011-04-14 20:34:11 + (Thu, 14 Apr 2011) New Revision: 6570 Modified: trunk/packages/cdbfasta/trunk/debian/patches/series Log: Forgot to leave out deleted patch from series Modified: trunk/packages/cdbfasta/trunk/debian/patches/series

[med-svn] [SCM] r-bioc-biobase branch, master, updated. upstream/2.10.0-14-ga853ec8

2011-04-14 Thread Charles Plessy
The following commit has been merged in the master branch: commit e413aac38b6d2c09735401c36090b0353df24185 Merge: 8688976b4c72cfc82ee044b70fee94cbd3b0a319 cf77ae3a40aedf7ac8ff7e7586fc40bffdec7123 Author: Charles Plessy ple...@debian.org Date: Fri Apr 15 12:00:04 2011 +0900 Merge commit

[med-svn] [SCM] r-bioc-biobase branch, master, updated. upstream/2.10.0-14-ga853ec8

2011-04-14 Thread Charles Plessy
The following commit has been merged in the master branch: commit a853ec8b2de578288e5bb5b316df0f6869db5dfc Author: Charles Plessy ple...@debian.org Date: Fri Apr 15 12:01:48 2011 +0900 Bioconductor 2.8 released (no new copyright statements). diff --git a/debian/changelog b/debian/changelog

[med-svn] [SCM] r-bioc-biobase branch, pristine-tar, updated. 609998748c62d347f74b50df7e6638a3676db2f0

2011-04-14 Thread Charles Plessy
The following commit has been merged in the pristine-tar branch: commit 609998748c62d347f74b50df7e6638a3676db2f0 Author: Charles Plessy ple...@debian.org Date: Fri Apr 15 12:00:04 2011 +0900 pristine-tar data for r-bioc-biobase_2.12.0.orig.tar.gz diff --git

[med-svn] [SCM] r-bioc-biobase annotated tag, upstream/2.12.0, created. upstream/2.12.0

2011-04-14 Thread Charles Plessy
The annotated tag, upstream/2.12.0 has been created at 93de2cfd8d121b94401cb4b7d9c18cda955c84a6 (tag) tagging cf77ae3a40aedf7ac8ff7e7586fc40bffdec7123 (commit) replaces upstream/2.10.0 tagged by Charles Plessy on Fri Apr 15 12:00:04 2011 +0900 - Shortlog

[med-svn] [SCM] r-bioc-edger branch, master, updated. upstream/2.0.5-17-g8caaded

2011-04-14 Thread Charles Plessy
The following commit has been merged in the master branch: commit 8caaded14234eb7bfb31632f730d23aad7e246fa Author: Charles Plessy ple...@debian.org Date: Fri Apr 15 13:21:25 2011 +0900 Bioconductor 2.8 stable release (on new copyright notice). diff --git a/debian/changelog

[med-svn] [SCM] r-bioc-edger branch, pristine-tar, updated. f5906b8d048984efd9177f34b0aa1bfc0fafc63e

2011-04-14 Thread Charles Plessy
The following commit has been merged in the pristine-tar branch: commit f5906b8d048984efd9177f34b0aa1bfc0fafc63e Author: Charles Plessy ple...@debian.org Date: Fri Apr 15 13:19:41 2011 +0900 pristine-tar data for r-bioc-edger_2.2.1.orig.tar.gz diff --git

[med-svn] [SCM] r-bioc-edger annotated tag, upstream/2.2.1, created. upstream/2.2.1

2011-04-14 Thread Charles Plessy
The annotated tag, upstream/2.2.1 has been created at d2f9aff87d396d025608f4facd30742be90895ac (tag) tagging 475ef12a1d38df6cf47a49ddec29c99f7dfbc794 (commit) replaces upstream/2.0.5 tagged by Charles Plessy on Fri Apr 15 13:19:41 2011 +0900 - Shortlog

[med-svn] [SCM] r-bioc-edger branch, master, updated. upstream/2.2.1-17-g88ed236

2011-04-14 Thread Charles Plessy
The following commit has been merged in the master branch: commit 88ed23603af02d8a92b526f33a87f1a4eb1ebba4 Author: Charles Plessy ple...@debian.org Date: Fri Apr 15 13:50:31 2011 +0900 Conf file to show that the package is managed with git-buildpackage. diff --git a/debian/gbp.conf

[med-svn] [SCM] r-bioc-limma branch, master, updated. upstream/3.8.0-8-g1494c09

2011-04-14 Thread Charles Plessy
The following commit has been merged in the master branch: commit 1494c09418edf13e4a24862fdfcde46866f6faba Author: Charles Plessy ple...@debian.org Date: Fri Apr 15 13:50:31 2011 +0900 Conf file to show that the package is managed with git-buildpackage. diff --git a/debian/gbp.conf