[med-svn] [fastqc] branch master updated (3f5b4da -> 8e016d9)

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[med-svn] [fastqc] 01/01: Fix typo

This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository fastqc. commit 8e016d99f42a3ac62750db6aa946f6649fcc113d Author: Andreas Tille Date: Thu Nov 26 08:08:31 2015 +0100 Fix typo --- debian/control | 2 +- 1 file changed, 1

[med-svn] [trimmomatic] 01/01: pristine-tar data for trimmomatic_0.33+dfsg.orig.tar.xz

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[med-svn] [trimmomatic] branch master created (now b9c62c7)

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[med-svn] [trimmomatic] annotated tag upstream/0.33+dfsg created (now 1118962)

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[med-svn] [trimmomatic] branch pristine-tar created (now ad33adf)

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[med-svn] r20563 - in trunk/packages/trimmomatic: . trunk

Author: tille Date: 2015-11-26 08:57:06 + (Thu, 26 Nov 2015) New Revision: 20563 Removed: trunk/packages/trimmomatic/tags/ trunk/packages/trimmomatic/trunk/debian/ Log: Trimmomatic was moved to Git ___ debian-med-commit mailing list debian-m

[med-svn] [trimmomatic] branch upstream created (now 985a058)

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[med-svn] [trimmomatic] tag debian/0.33+dfsg-1 created (now da746a8)

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[med-svn] r20564 - trunk/packages/trimmomatic/trunk

Author: tille Date: 2015-11-26 08:58:19 + (Thu, 26 Nov 2015) New Revision: 20564 Added: trunk/packages/trimmomatic/trunk/README.status Log: Drop README.status to leave a trace Added: trunk/packages/trimmomatic/trunk/README.status ===

[med-svn] [qualimap] 01/01: libejml-java was accepted

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[med-svn] [qualimap] branch master updated (808ee98 -> c673af4)

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[med-svn] [trimmomatic] 09/10: Do not compress batchTrim

This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository trimmomatic. commit 39b7169b1a49193faa65ce4e93936a59c7dae535 Author: Andreas Tille Date: Thu Nov 26 10:56:12 2015 +0100 Do not compress batchTrim --- debian/rules | 6 +

[med-svn] [trimmomatic] 06/10: Inject a small wrapper script that simplifies calling Trimmomatic for a heap of sequences

This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository trimmomatic. commit eccfef656089004ed408f92b3df4ede03a347cc0 Author: Andreas Tille Date: Thu Nov 26 10:44:21 2015 +0100 Inject a small wrapper script that simplifies cal

[med-svn] [trimmomatic] 07/10: Do not install batchTrimm in /usr/bin as long as it is not fully tested

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[med-svn] [trimmomatic] 02/10: Merge tag 'upstream/0.35+dfsg'

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[med-svn] [trimmomatic] 01/10: Imported Upstream version 0.35+dfsg

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[med-svn] [trimmomatic] 08/10: Move batchTrim to examples for the moment

This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository trimmomatic. commit 49bcc6f550e685fffc94d5e02b650bf67158786e Author: Andreas Tille Date: Thu Nov 26 10:45:57 2015 +0100 Move batchTrim to examples for the moment --- de

[med-svn] [trimmomatic] branch master updated (b9c62c7 -> 99e9cd6)

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[med-svn] [trimmomatic] 04/10: Refresh patches

This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository trimmomatic. commit cd99969671ec8359f446dbb31ec4d24e8cb11299 Author: Andreas Tille Date: Thu Nov 26 10:00:23 2015 +0100 Refresh patches --- debian/patches/buildxmlJbzip

[med-svn] [trimmomatic] 03/10: New upstream version

This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository trimmomatic. commit 87506c34e097cc7325e8cc451daaec08f697e211 Author: Andreas Tille Date: Thu Nov 26 09:59:09 2015 +0100 New upstream version --- debian/changelog | 6 ++

[med-svn] [trimmomatic] 05/10: Delete unused patch

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[med-svn] [trimmomatic] branch upstream updated (985a058 -> 56676b6)

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[med-svn] [trimmomatic] annotated tag upstream/0.35+dfsg created (now e511a0c)

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[med-svn] [trimmomatic] branch pristine-tar updated (ad33adf -> 55fff8e)

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[med-svn] [trimmomatic] 01/01: pristine-tar data for trimmomatic_0.35+dfsg.orig.tar.xz

This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch pristine-tar in repository trimmomatic. commit 55fff8ebd2db1b741ae0a9acaab7afa2ec119cf6 Author: Andreas Tille Date: Thu Nov 26 09:58:43 2015 +0100 pristine-tar data for trimmomatic_0.35+dfsg

[med-svn] [trimmomatic] tag debian/0.35+dfsg-1 created (now 99e9cd6)

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[med-svn] [trimmomatic] 10/10: Upload to unstable

This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository trimmomatic. commit 99e9cd6b05e60cf3212664a932950db0531e5e33 Author: Andreas Tille Date: Thu Nov 26 10:56:47 2015 +0100 Upload to unstable --- debian/changelog | 5 +++-

[med-svn] [picard-tools] 01/07: New upstream version, add get-orig-source target

This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository picard-tools. commit 25df4d92bab1065db2b0b012ac51c488f3b85395 Author: Andreas Tille Date: Thu Nov 26 11:11:40 2015 +0100 New upstream version, add get-orig-source target

[med-svn] [picard-tools] 04/07: Remove Shaun Jackman and add myself as Uploader

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[med-svn] [picard-tools] 05/07: Removed outdated information from README.source

This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository picard-tools. commit 1488a9f94c691f35815edb9b9e1268567887c278 Author: Andreas Tille Date: Thu Nov 26 11:20:09 2015 +0100 Removed outdated information from README.source

[med-svn] [picard-tools] 03/07: Merge tag 'upstream/1.141+dfsg.1'

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[med-svn] [picard-tools] branch master updated (33ced40 -> 6df0a22)

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[med-svn] [picard-tools] 01/01: pristine-tar data for picard-tools_1.141+dfsg.1.orig.tar.xz

This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch pristine-tar in repository picard-tools. commit 42ab03eb3b72f4a5c975b10fc05d87db4c74fddb Author: Andreas Tille Date: Thu Nov 26 11:13:10 2015 +0100 pristine-tar data for picard-tools_1.141+d

[med-svn] [picard-tools] branch upstream updated (4957015 -> c2bd278)

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[med-svn] [picard-tools] branch pristine-tar updated (0f25529 -> 42ab03e)

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[med-svn] [picard-tools] 07/07: Try to implement Emmanuel Bourg's hints

This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository picard-tools. commit 6df0a22c2a5011793120a8d3b873a514b3c742b3 Author: Andreas Tille Date: Thu Nov 26 11:37:54 2015 +0100 Try to implement Emmanuel Bourg's hints --- deb

[med-svn] [picard-tools] 06/07: Try to provide maven input file

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[med-svn] [mia] 03/05: Update changelog

This is an automated email from the git hooks/post-receive script. gert-guest pushed a commit to branch master in repository mia. commit 400665d84d8cdcff4230dc546dfe6a0406427835 Author: Gert Wollny Date: Tue Nov 24 20:21:49 2015 +0100 Update changelog --- debian/changelog | 3 ++- 1 file

[med-svn] [mia] 05/05: update patch for more spell corrections

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[med-svn] [mia] 04/05: correct more spelling

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[med-svn] [mia] tag debian/2.2.7-2 created (now e3e65cf)

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[med-svn] [mia] 01/05: Update dependency to libgsl-dev

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[med-svn] [mia] 02/05: Add spell checking patch

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[med-svn] [mia] branch master updated (7f32cf4 -> e3e65cf)

This is an automated email from the git hooks/post-receive script. gert-guest pushed a change to branch master in repository mia. from 7f32cf4 prepare for release new aee92dc Update dependency to libgsl-dev new 28f2656 Add spell checking patch new 400665d Up

[med-svn] r20565 - trunk/packages/libsbml/trunk/debian

Author: ivomaintz-guest Date: 2015-11-26 15:35:19 + (Thu, 26 Nov 2015) New Revision: 20565 Modified: trunk/packages/libsbml/trunk/debian/changelog trunk/packages/libsbml/trunk/debian/libsbml5-octave.install Log: new upstream update Modified: trunk/packages/libsbml/trunk/debian/changel

[med-svn] [qualimap] 01/03: Thanks Bas for pointing out the typo

This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository qualimap. commit d1d59c881177b84b8dd47170b864eb20f23dced2 Author: Andreas Tille Date: Thu Nov 26 18:32:46 2015 +0100 Thanks Bas for pointing out the typo --- debian/rul

[med-svn] [qualimap] branch master updated (c673af4 -> 49f0e7d)

This is an automated email from the git hooks/post-receive script. tille pushed a change to branch master in repository qualimap. from c673af4 libejml-java was accepted new d1d59c8 Thanks Bas for pointing out the typo new 95986f6 Follow Emmanuel Borg's hint to rather

[med-svn] [qualimap] 03/03: Add missing BioJava - hoping version 4 is OK

This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository qualimap. commit 49f0e7d0f9c6cfb27e61a48c37ad4260ae2e2773 Author: Andreas Tille Date: Thu Nov 26 18:36:25 2015 +0100 Add missing BioJava - hoping version 4 is OK --- de

[med-svn] [qualimap] 02/03: Follow Emmanuel Borg's hint to rather patch pom.xml than fiddling around with maven .rules

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[med-svn] r20566 - in trunk/packages: . ffp ffp/trunk ffp/trunk/debian ffp/trunk/debian/source ffp/trunk/debian/upstream

Author: tille Date: 2015-11-26 17:50:54 + (Thu, 26 Nov 2015) New Revision: 20566 Added: trunk/packages/ffp/ trunk/packages/ffp/trunk/ trunk/packages/ffp/trunk/debian/ trunk/packages/ffp/trunk/debian/changelog trunk/packages/ffp/trunk/debian/compat trunk/packages/ffp/trunk/deb

[med-svn] [qualimap] branch master updated (49f0e7d -> 3146f26)

This is an automated email from the git hooks/post-receive script. tille pushed a change to branch master in repository qualimap. from 49f0e7d Add missing BioJava - hoping version 4 is OK new 3146f26 We do nit need biojava but rather the classes described at http://www.massapi

[med-svn] [qualimap] 01/01: We do nit need biojava but rather the classes described at http://www.massapi.com/package/org/bioinfo/index.html

This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository qualimap. commit 3146f26e4d36c6a1bac671405224d77f6ab5da69 Author: Andreas Tille Date: Thu Nov 26 19:18:49 2015 +0100 We do nit need biojava but rather the classes descri

[med-svn] [gubbins] 01/01: Now idea how to tweak brew install system - try manual installation of *.py files

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[med-svn] [gubbins] branch master updated (6da4e6a -> 5c8d92f)

This is an automated email from the git hooks/post-receive script. tille pushed a change to branch master in repository gubbins. from 6da4e6a Do not ignore failed tests new 5c8d92f Now idea how to tweak brew install system - try manual installation of *.py files The 1 revisio

[med-svn] [gatk] 01/01: pristine-tar data for gatk_3.5+dfsg.orig.tar.xz

This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch pristine-tar in repository gatk. commit 852d6887fd956d288910b542802f0a38d77a0bb3 Author: Andreas Tille Date: Thu Nov 26 19:52:50 2015 +0100 pristine-tar data for gatk_3.5+dfsg.orig.tar.xz --

[med-svn] [gatk] 03/03: New upstream version

This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository gatk. commit 0997a18df41e118a5ec2a433ae117e18de8af022 Author: Andreas Tille Date: Thu Nov 26 19:53:03 2015 +0100 New upstream version --- debian/changelog

[med-svn] [gatk] 02/03: Merge tag 'upstream/3.5+dfsg'

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[med-svn] [gatk] branch pristine-tar updated (c83cbcb -> 852d688)

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[med-svn] [gmap] 03/03: d/changelog: new upstream version, upload to unstable

This is an automated email from the git hooks/post-receive script. malex-guest pushed a commit to branch master in repository gmap. commit bb5540f6d2ab3cdbe00db65c65ff705830ab9464 Author: Alexandre Mestiashvili Date: Thu Nov 26 11:52:34 2015 +0100 d/changelog: new upstream version, upload

[med-svn] [gmap] 01/03: Imported Upstream version 2015-11-20

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[med-svn] [gmap] tag debian/2015-11-20-1 created (now bb5540f)

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[med-svn] [gmap] 01/01: pristine-tar data for gmap_2015-11-20.orig.tar.gz

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[med-svn] [gmap] branch pristine-tar updated (f12a26d -> 579556b)

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[med-svn] [gmap] annotated tag upstream/2015-11-20 created (now a566619)

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[med-svn] [gmap] branch upstream updated (fda1ac5 -> ea9d733)

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[med-svn] [gmap] 02/03: Merge tag 'upstream/2015-11-20'

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[med-svn] [gmap] branch master updated (2c5c7af -> bb5540f)

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[med-svn] [gubbins] branch master updated (5c8d92f -> 5af28d6)

This is an automated email from the git hooks/post-receive script. tille pushed a change to branch master in repository gubbins. from 5c8d92f Now idea how to tweak brew install system - try manual installation of *.py files new 5af28d6 Move private module to correct dir The 1

[med-svn] [gubbins] 01/01: Move private module to correct dir

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[med-svn] [gatk] branch master updated (0997a18 -> af25d05)

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[med-svn] [gatk] 01/01: Build system maven

This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository gatk. commit af25d05afd34ea99f7c99dd57a9e274a6125dee1 Author: Andreas Tille Date: Thu Nov 26 20:27:04 2015 +0100 Build system maven --- debian/rules | 2 +- 1 file chan

[med-svn] r20567 - trunk/packages/pdb2pqr/trunk/debian

Author: tille Date: 2015-11-26 19:29:39 + (Thu, 26 Nov 2015) New Revision: 20567 Removed: trunk/packages/pdb2pqr/trunk/debian/pycompat Modified: trunk/packages/pdb2pqr/trunk/debian/changelog trunk/packages/pdb2pqr/trunk/debian/rules Log: Enable building arch independent packages separ

[med-svn] r20568 - trunk/packages/pdb2pqr/tags

Author: tille Date: 2015-11-26 19:30:16 + (Thu, 26 Nov 2015) New Revision: 20568 Added: trunk/packages/pdb2pqr/tags/2.0.0+dfsg-2/ Removed: trunk/packages/pdb2pqr/tags/1.8+dfsg-1/ Log: Tagged 2.0.0+dfsg-2 ___ debian-med-commit mailing list de

[med-svn] [trnascan-se] branch master updated (393bede -> eb4121d)

This is an automated email from the git hooks/post-receive script. afif-guest pushed a change to branch master in repository trnascan-se. from 393bede Merge tag 'upstream/1.3.1+dfsg' new eb4121d Set archive area to non-free The 1 revisions listed above as "new" are entirely ne

[med-svn] [trnascan-se] 01/01: Set archive area to non-free

This is an automated email from the git hooks/post-receive script. afif-guest pushed a commit to branch master in repository trnascan-se. commit eb4121d4d3eff40464148b48ee656f432434c54e Author: Afif Elghraoui Date: Thu Nov 26 15:59:04 2015 -0800 Set archive area to non-free dbcon

[med-svn] [brig] branch master created (now f5c0431)

This is an automated email from the git hooks/post-receive script. tille pushed a change to branch master in repository brig. at f5c0431 Initial Debian packaging This branch includes the following new commits: new a8e6790 Imported Upstream version 0.95+dfsg new f5c0

[med-svn] [brig] branch pristine-tar created (now b3f6a51)

This is an automated email from the git hooks/post-receive script. tille pushed a change to branch pristine-tar in repository brig. at b3f6a51 pristine-tar data for brig_0.95+dfsg.orig.tar.xz This branch includes the following new commits: new b3f6a51 pristine-tar data for

[med-svn] [brig] 02/02: Initial Debian packaging

This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch master in repository brig. commit f5c043167b9dacb02379a37505a1a97093ad350a Author: Andreas Tille Date: Fri Nov 27 08:41:20 2015 +0100 Initial Debian packaging --- debian/changelog |

[med-svn] [brig] 01/01: pristine-tar data for brig_0.95+dfsg.orig.tar.xz

This is an automated email from the git hooks/post-receive script. tille pushed a commit to branch pristine-tar in repository brig. commit b3f6a518da75c5cb29d3ecbb79e179cb54ee87ca Author: Andreas Tille Date: Fri Nov 27 08:41:07 2015 +0100 pristine-tar data for brig_0.95+dfsg.orig.tar.xz -

[med-svn] [brig] branch upstream created (now a8e6790)

This is an automated email from the git hooks/post-receive script. tille pushed a change to branch upstream in repository brig. at a8e6790 Imported Upstream version 0.95+dfsg No new revisions were added by this update. -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian

[med-svn] [brig] annotated tag upstream/0.95+dfsg created (now d97b6b9)

This is an automated email from the git hooks/post-receive script. tille pushed a change to annotated tag upstream/0.95+dfsg in repository brig. at d97b6b9 (tag) tagging a8e67907222cde49e0a454d265fd5be729b21586 (commit) tagged by Andreas Tille on Fri Nov 27 08:41:07 2015