[med-svn] r14335 - in trunk/packages/phyml/trunk/debian: . patches

2013-08-05 Thread Andreas Tille
Author: tille Date: 2013-08-05 08:01:29 + (Mon, 05 Aug 2013) New Revision: 14335 Added: trunk/packages/phyml/trunk/debian/patches/ trunk/packages/phyml/trunk/debian/patches/series trunk/packages/phyml/trunk/debian/patches/sse_only_if_supported.patch Modified:

[med-svn] [SCM] r-cran-munsell annotated tag, upstream/0.4.2, created. upstream/0.4.2

2013-08-05 Thread Benjamin Eikel
The annotated tag, upstream/0.4.2 has been created at d0173e9d6894cec1418323381434a4bff5c9a90b (tag) tagging f06a0f261257756b09a0a95641a63ee81e0ce249 (commit) replaces upstream/0.4 tagged by Benjamin Eikel on Tue Jul 16 10:17:03 2013 +0200 - Shortlog

[med-svn] [SCM] r-cran-scales annotated tag, upstream/0.2.3, created. upstream/0.2.3

2013-08-05 Thread Benjamin Eikel
The annotated tag, upstream/0.2.3 has been created at 35b1cf4dd30dab4df8dedc4610b9f9b50db4dab6 (tag) tagging 788142009788748926adfa4411db75eef8f5931f (commit) tagged by Benjamin Eikel on Thu Jun 13 13:38:16 2013 +0200 - Shortlog

[med-svn] r14336 - trunk/packages/phyml/tags

2013-08-05 Thread Andreas Tille
Author: tille Date: 2013-08-05 09:45:37 + (Mon, 05 Aug 2013) New Revision: 14336 Added: trunk/packages/phyml/tags/2:20120412-2/ Log: Tagged 2:20120412-2 ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org

[med-svn] [r-bioc-limma] branch meta updated (9961a91 - 3134814)

2013-08-05 Thread Charles Plessy
This is an automated email from the git hooks/post-receive script. plessy pushed a change to branch meta in repository r-bioc-limma. from 9961a91 r-bioc-limma (3.16.7~dfsg-1) unstable; urgency=low new 3134814 Build logs for 3.16.7~dfsg-1. The 1 revisions listed above as new

[med-svn] r14337 - in trunk/packages/infernal/trunk/debian: . source

2013-08-05 Thread Andreas Tille
Author: tille Date: 2013-08-05 10:03:39 + (Mon, 05 Aug 2013) New Revision: 14337 Added: trunk/packages/infernal/trunk/debian/source/format Modified: trunk/packages/infernal/trunk/debian/changelog Log: New upstream source; debian/source/format: 3.0 (quilt) Modified:

[med-svn] r14338 - trunk/packages/infernal/trunk/debian

2013-08-05 Thread Andreas Tille
Author: tille Date: 2013-08-05 10:05:17 + (Mon, 05 Aug 2013) New Revision: 14338 Modified: trunk/packages/infernal/trunk/debian/changelog trunk/packages/infernal/trunk/debian/control Log: cme fix dpkg-control Modified: trunk/packages/infernal/trunk/debian/changelog

[med-svn] r14339 - trunk/packages/infernal/trunk/debian

2013-08-05 Thread Andreas Tille
Author: tille Date: 2013-08-05 10:06:01 + (Mon, 05 Aug 2013) New Revision: 14339 Modified: trunk/packages/infernal/trunk/debian/changelog trunk/packages/infernal/trunk/debian/compat trunk/packages/infernal/trunk/debian/control Log: Debhelper 9 Modified:

[med-svn] r14340 - trunk/packages/infernal/trunk/debian

2013-08-05 Thread Andreas Tille
Author: tille Date: 2013-08-05 10:07:33 + (Mon, 05 Aug 2013) New Revision: 14340 Modified: trunk/packages/infernal/trunk/debian/changelog trunk/packages/infernal/trunk/debian/control trunk/packages/infernal/trunk/debian/rules Log: do not Build-Depend: quilt since source format

[med-svn] [r-bioc-edger] 07/07: r-bioc-edger (3.2.4~dfsg-1) unstable; urgency=low

2013-08-05 Thread Charles Plessy
This is an automated email from the git hooks/post-receive script. plessy pushed a commit to branch master in repository r-bioc-edger. commit 027cfce709e451c8f5ab21f330b518970b1bc01d Author: Charles Plessy ple...@debian.org Date: Mon Aug 5 19:28:07 2013 +0900 r-bioc-edger (3.2.4~dfsg-1)

[med-svn] [r-bioc-edger] 05/07: Signal autopkgtest suite with XS-Testsuite in source package control file.

2013-08-05 Thread Charles Plessy
This is an automated email from the git hooks/post-receive script. plessy pushed a commit to branch master in repository r-bioc-edger. commit 735a2e92777a3d884f35360cb12989a5c1e38abc Author: Charles Plessy ple...@debian.org Date: Mon Aug 5 19:11:26 2013 +0900 Signal autopkgtest suite with

[med-svn] [r-bioc-edger] 04/07: Normalised VCS URLs.

2013-08-05 Thread Charles Plessy
This is an automated email from the git hooks/post-receive script. plessy pushed a commit to branch master in repository r-bioc-edger. commit 846128fdf68954bbf9108c6cf8e65d87c13179e7 Author: Charles Plessy ple...@debian.org Date: Mon Aug 5 19:10:43 2013 +0900 Normalised VCS URLs. ---

[med-svn] [r-bioc-edger] branch pristine-tar updated (f9a6852 - b56bd21)

2013-08-05 Thread Charles Plessy
This is an automated email from the git hooks/post-receive script. plessy pushed a change to branch pristine-tar in repository r-bioc-edger. from f9a6852 pristine-tar data for r-bioc-edger_3.2.3~dfsg.orig.tar.gz new b56bd21 pristine-tar data for

[med-svn] [r-bioc-edger] branch upstream updated (95e5b70 - 543a589)

2013-08-05 Thread Charles Plessy
This is an automated email from the git hooks/post-receive script. plessy pushed a change to branch upstream in repository r-bioc-edger. from 95e5b70 Imported Upstream version 3.2.3~dfsg new 543a589 Imported Upstream version 3.2.4~dfsg The 1 revisions listed above as new are

[med-svn] [r-bioc-edger] annotated tag debian/3.2.4_dfsg-1 created (now fe0d784)

2013-08-05 Thread Charles Plessy
This is an automated email from the git hooks/post-receive script. plessy pushed a change to annotated tag debian/3.2.4_dfsg-1 in repository r-bioc-edger. at fe0d784 (tag) tagging 027cfce709e451c8f5ab21f330b518970b1bc01d (commit) replaces debian/2.6.1_dfsg-1 tagged by Charles

[med-svn] [r-bioc-edger] 01/01: pristine-tar data for r-bioc-edger_3.2.4~dfsg.orig.tar.gz

2013-08-05 Thread Charles Plessy
This is an automated email from the git hooks/post-receive script. plessy pushed a commit to branch pristine-tar in repository r-bioc-edger. commit b56bd21d78f63a8e84fe0a845e4a8e0edfec184b Author: Charles Plessy ple...@debian.org Date: Mon Aug 5 19:03:58 2013 +0900 pristine-tar data for

[med-svn] [r-bioc-edger] 06/07: Correct the autopkgtest as the test files are compressed.

2013-08-05 Thread Charles Plessy
This is an automated email from the git hooks/post-receive script. plessy pushed a commit to branch master in repository r-bioc-edger. commit a429231dc83bb969058de23a084238054c5da948 Author: Charles Plessy ple...@debian.org Date: Mon Aug 5 19:25:48 2013 +0900 Correct the autopkgtest as

[med-svn] [r-bioc-edger] 03/07: New upstream release (license changed to GPL-2+ between versions 2.6.1 and 3.2.3).

2013-08-05 Thread Charles Plessy
This is an automated email from the git hooks/post-receive script. plessy pushed a commit to branch master in repository r-bioc-edger. commit c0dc75cc6dde9b5af99fb2a5ad0f4e451410ed69 Author: Charles Plessy ple...@debian.org Date: Mon Aug 5 19:09:35 2013 +0900 New upstream release (license

[med-svn] [r-bioc-edger] branch meta updated (f00c42b - 7b57236)

2013-08-05 Thread Charles Plessy
This is an automated email from the git hooks/post-receive script. plessy pushed a change to branch meta in repository r-bioc-edger. from f00c42b r-bioc-edger (2.6.1~dfsg-1) unstable; urgency=low new f82d9cf Build logs for version 3.2.3~dfsg-1 new 7b57236

[med-svn] [r-bioc-edger] 01/07: Imported Upstream version 3.2.4~dfsg

2013-08-05 Thread Charles Plessy
This is an automated email from the git hooks/post-receive script. plessy pushed a commit to branch master in repository r-bioc-edger. commit 543a589e3f2991b4693575dc4d2bbc0eb4ea9d90 Author: Charles Plessy ple...@debian.org Date: Mon Aug 5 19:03:58 2013 +0900 Imported Upstream version

[med-svn] [r-bioc-edger] 02/07: Merge tag 'upstream/3.2.4_dfsg'

2013-08-05 Thread Charles Plessy
This is an automated email from the git hooks/post-receive script. plessy pushed a commit to branch master in repository r-bioc-edger. commit 93a34f5da304118fe7d106f8edd27426e5a1ff48 Merge: ae81c49 543a589 Author: Charles Plessy ple...@debian.org Date: Mon Aug 5 19:03:58 2013 +0900 Merge

[med-svn] [r-bioc-edger] annotated tag upstream/3.2.4_dfsg created (now 870c7b7)

2013-08-05 Thread Charles Plessy
This is an automated email from the git hooks/post-receive script. plessy pushed a change to annotated tag upstream/3.2.4_dfsg in repository r-bioc-edger. at 870c7b7 (tag) tagging 543a589e3f2991b4693575dc4d2bbc0eb4ea9d90 (commit) replaces upstream/3.2.3_dfsg tagged by Charles

[med-svn] [r-bioc-edger] branch master updated (ae81c49 - 027cfce)

2013-08-05 Thread Charles Plessy
This is an automated email from the git hooks/post-receive script. plessy pushed a change to branch master in repository r-bioc-edger. from ae81c49 Upload to unstable new 543a589 Imported Upstream version 3.2.4~dfsg new 93a34f5 Merge tag 'upstream/3.2.4_dfsg'

[med-svn] r14341 - trunk/packages/infernal/trunk/debian

2013-08-05 Thread Andreas Tille
Author: tille Date: 2013-08-05 10:46:30 + (Mon, 05 Aug 2013) New Revision: 14341 Modified: trunk/packages/infernal/trunk/debian/changelog trunk/packages/infernal/trunk/debian/rules Log: remove redundant setting for flags which is handled by debhelper 9 automatically Modified:

[med-svn] r14342 - trunk/packages/infernal/trunk/debian

2013-08-05 Thread Andreas Tille
Author: tille Date: 2013-08-05 10:55:09 + (Mon, 05 Aug 2013) New Revision: 14342 Modified: trunk/packages/infernal/trunk/debian/changelog trunk/packages/infernal/trunk/debian/control Log: Build only on i386 or amd64 architectures Modified:

[med-svn] r14343 - trunk/packages/infernal/trunk/debian

2013-08-05 Thread Andreas Tille
Author: tille Date: 2013-08-05 11:07:21 + (Mon, 05 Aug 2013) New Revision: 14343 Modified: trunk/packages/infernal/trunk/debian/changelog trunk/packages/infernal/trunk/debian/copyright Log: DEP5 Modified: trunk/packages/infernal/trunk/debian/changelog

[med-svn] r14344 - trunk/packages/infernal/trunk/debian

2013-08-05 Thread Andreas Tille
Author: tille Date: 2013-08-05 11:09:09 + (Mon, 05 Aug 2013) New Revision: 14344 Modified: trunk/packages/infernal/trunk/debian/changelog trunk/packages/infernal/trunk/debian/control Log: use anonscm in Vcs fields Modified: trunk/packages/infernal/trunk/debian/changelog

[med-svn] r14345 - trunk/packages/infernal/trunk/debian

2013-08-05 Thread Andreas Tille
Author: tille Date: 2013-08-05 11:22:54 + (Mon, 05 Aug 2013) New Revision: 14345 Modified: trunk/packages/infernal/trunk/debian/control Log: Fix syntax Modified: trunk/packages/infernal/trunk/debian/control === ---

[med-svn] r14346 - trunk/packages/infernal/trunk/debian

2013-08-05 Thread Andreas Tille
Author: tille Date: 2013-08-05 11:45:00 + (Mon, 05 Aug 2013) New Revision: 14346 Modified: trunk/packages/infernal/trunk/debian/changelog trunk/packages/infernal/trunk/debian/copyright trunk/packages/infernal/trunk/debian/rules Log: SOme lintian warnings; use xz compression (which

[med-svn] r14347 - trunk/packages/infernal/tags

2013-08-05 Thread Andreas Tille
Author: tille Date: 2013-08-05 11:46:09 + (Mon, 05 Aug 2013) New Revision: 14347 Added: trunk/packages/infernal/tags/1.1~rc4-1/ Log: Tagged 1.1~rc4-1 ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org

[med-svn] r14348 - in trunk/packages/soap/soapdenovo2/trunk/debian: . patches

2013-08-05 Thread Olivier Sallou
Author: osallou Date: 2013-08-05 12:04:39 + (Mon, 05 Aug 2013) New Revision: 14348 Added: trunk/packages/soap/soapdenovo2/trunk/debian/patches/fix_compilation Modified: trunk/packages/soap/soapdenovo2/trunk/debian/changelog trunk/packages/soap/soapdenovo2/trunk/debian/compat

[med-svn] r14349 - trunk/packages/soap/soapdenovo2/trunk/debian

2013-08-05 Thread Olivier Sallou
Author: osallou Date: 2013-08-05 12:07:08 + (Mon, 05 Aug 2013) New Revision: 14349 Modified: trunk/packages/soap/soapdenovo2/trunk/debian/changelog trunk/packages/soap/soapdenovo2/trunk/debian/control Log: increase standards version, prepare for upload Modified:

[med-svn] r14350 - trunk/packages/soap/soapdenovo2/trunk/debian

2013-08-05 Thread Olivier Sallou
Author: osallou Date: 2013-08-05 12:18:03 + (Mon, 05 Aug 2013) New Revision: 14350 Modified: trunk/packages/soap/soapdenovo2/trunk/debian/control trunk/packages/soap/soapdenovo2/trunk/debian/copyright Log: remove binaries/headers from upstream code Modified:

[med-svn] r14351 - in trunk/packages/soap/soapdenovo2/trunk/debian: . patches

2013-08-05 Thread Olivier Sallou
Author: osallou Date: 2013-08-05 12:55:59 + (Mon, 05 Aug 2013) New Revision: 14351 Modified: trunk/packages/soap/soapdenovo2/trunk/debian/changelog trunk/packages/soap/soapdenovo2/trunk/debian/copyright trunk/packages/soap/soapdenovo2/trunk/debian/patches/add_hardening

[med-svn] r14352 - in trunk/packages/soap/soapdenovo2/trunk/debian: . patches

2013-08-05 Thread Olivier Sallou
Author: osallou Date: 2013-08-05 14:58:04 + (Mon, 05 Aug 2013) New Revision: 14352 Added: trunk/packages/soap/soapdenovo2/trunk/debian/patches/use_debian_zlib trunk/packages/soap/soapdenovo2/trunk/debian/patches/use_libsam Modified:

[med-svn] r14353 - trunk/packages/soap/soapdenovo2/trunk/debian

2013-08-05 Thread Olivier Sallou
Author: osallou Date: 2013-08-05 15:03:53 + (Mon, 05 Aug 2013) New Revision: 14353 Modified: trunk/packages/soap/soapdenovo2/trunk/debian/changelog Log: upload new release Modified: trunk/packages/soap/soapdenovo2/trunk/debian/changelog

[med-svn] r14354 - in trunk/packages/soap/soapdenovo2/tags: . 240+dfsg-1/debian 240+dfsg-1/debian/patches

2013-08-05 Thread Olivier Sallou
Author: osallou Date: 2013-08-05 15:07:14 + (Mon, 05 Aug 2013) New Revision: 14354 Added: trunk/packages/soap/soapdenovo2/tags/240+dfsg-1/ trunk/packages/soap/soapdenovo2/tags/240+dfsg-1/debian/changelog trunk/packages/soap/soapdenovo2/tags/240+dfsg-1/debian/compat