[med-svn] [python-pysam] annotated tag upstream/0.11.2.2+ds created (now 1edc2ac)

2017-07-03 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif pushed a change to annotated tag upstream/0.11.2.2+ds in repository python-pysam. at 1edc2ac (tag) tagging 1520aab08562a7f44fd4570ea351a3dbd5db5a35 (commit) replaces upstream/0.10.0+ds tagged by Afif

[med-svn] [python-pysam] branch pristine-tar updated (7b75427 -> d973dfc)

2017-07-03 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif pushed a change to branch pristine-tar in repository python-pysam. from 7b75427 pristine-tar data for python-pysam_0.10.0+ds.orig.tar.gz new d973dfc pristine-tar data for

[med-svn] [python-pysam] 03/04: Update patches

2017-07-03 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif pushed a commit to branch master in repository python-pysam. commit 3a8f314f15775a69d38aa9e59ecaff8cf7e7664e Author: Afif Elghraoui Date: Sun Jul 2 04:08:59 2017 -0400 Update patches ---

[med-svn] [python-pysam] branch upstream updated (dadf905 -> 1520aab)

2017-07-03 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif pushed a change to branch upstream in repository python-pysam. from dadf905 Imported Upstream version 0.10.0+ds new 1520aab Imported Upstream version 0.11.2.2+ds The 1 revisions listed above as "new" are

[med-svn] [python-pysam] 02/04: Merge tag 'upstream/0.11.2.2+ds'

2017-07-03 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif pushed a commit to branch master in repository python-pysam. commit 21a9d046a132019cfcd185ba933cddd88fd2d489 Merge: b8fd88f 1520aab Author: Afif Elghraoui Date: Sun Jul 2 03:51:28 2017 -0400 Merge

[med-svn] [python-pysam] 01/01: pristine-tar data for python-pysam_0.11.2.2+ds.orig.tar.gz

2017-07-03 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif pushed a commit to branch pristine-tar in repository python-pysam. commit d973dfc92093f2b0743d98b724804711eed97b08 Author: Afif Elghraoui Date: Sun Jul 2 03:51:28 2017 -0400 pristine-tar data for

[med-svn] [python-pysam] branch master updated (b8fd88f -> 6f6eeae)

2017-07-03 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif pushed a change to branch master in repository python-pysam. from b8fd88f Upload to unstable new 1520aab Imported Upstream version 0.11.2.2+ds new 21a9d04 Merge tag 'upstream/0.11.2.2+ds'

[med-svn] [python-pysam] 04/04: Bump htslib/samtools/bcftools minimum version requirements

2017-07-03 Thread Afif Elghraoui
This is an automated email from the git hooks/post-receive script. afif pushed a commit to branch master in repository python-pysam. commit 6f6eeae0c9581350f7ff48a60f84ecb6a71b0330 Author: Afif Elghraoui Date: Sun Jul 2 04:10:30 2017 -0400 Bump htslib/samtools/bcftools

[med-svn] [bwa] branch master updated (a103fbf -> 8a74ee9)

2017-07-03 Thread Nadiya Sitdykova
This is an automated email from the git hooks/post-receive script. rovenskasa-guest pushed a change to branch master in repository bwa. from a103fbf Added ref to bio.tools/tools/BWA new 0d751fa remove workaround fix new 7722b0f add patch to check avg and std for nan

[med-svn] [bwa] 02/03: add patch to check avg and std for nan

2017-07-03 Thread Nadiya Sitdykova
This is an automated email from the git hooks/post-receive script. rovenskasa-guest pushed a commit to branch master in repository bwa. commit 7722b0f5bb0e2f1d4ceea9ce0f2c6f695969995b Author: Nadiya Sitdykova Date: Mon Jul 3 21:29:56 2017 -0400 add patch to check

[med-svn] [bwa] 01/03: remove workaround fix

2017-07-03 Thread Nadiya Sitdykova
This is an automated email from the git hooks/post-receive script. rovenskasa-guest pushed a commit to branch master in repository bwa. commit 0d751fab89a678bc495103e02be6921f084ce19b Author: Nadiya Sitdykova Date: Mon Jul 3 20:31:13 2017 -0400 remove workaround fix

[med-svn] [bwa] 03/03: add patch with pringting of unsigned counts

2017-07-03 Thread Nadiya Sitdykova
This is an automated email from the git hooks/post-receive script. rovenskasa-guest pushed a commit to branch master in repository bwa. commit 8a74ee988b6afe44245116cf14600b8611a1a5e1 Author: Nadiya Sitdykova Date: Mon Jul 3 21:41:49 2017 -0400 add patch with