[med-svn] [genometools] annotated tag debian/1.5.10+ds-1 created (now c8e119d)

2017-08-06 Thread Sascha Steinbiss 
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satta pushed a change to annotated tag debian/1.5.10+ds-1
in repository genometools.

at  c8e119d   (tag)
   tagging  9b4fe81091b95d934cb19e6833bd704d2453bea0 (commit)
  replaces  debian/1.5.9+ds-5
 tagged by  Sascha Steinbiss
on  Sun Aug 6 16:58:35 2017 +0200

- Log -
genometools Debian release 1.5.10+ds-1
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Sascha Steinbiss (6):
  New upstream version 1.5.10+ds
  Merge tag 'upstream/1.5.10+ds'
  WIP: ner upstream
  bump Standards-Version
  dch -r
  drop obsolete dbg package

---

No new revisions were added by this update.

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[med-svn] [genometools] branch master updated (80bbe17 -> 9b4fe81)

2017-08-06 Thread Sascha Steinbiss 
This is an automated email from the git hooks/post-receive script.

satta pushed a change to branch master
in repository genometools.

  from  80bbe17   WIP: ner upstream
   new  0ef779c   bump Standards-Version
   new  d2672a9   dch -r
   new  9b4fe81   drop obsolete dbg package

The 3 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 debian/changelog |  6 --
 debian/control   | 14 +-
 debian/rules |  3 ---
 3 files changed, 5 insertions(+), 18 deletions(-)

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[med-svn] [genometools] 02/03: dch -r

2017-08-06 Thread Sascha Steinbiss 
This is an automated email from the git hooks/post-receive script.

satta pushed a commit to branch master
in repository genometools.

commit d2672a98c577bc9228c63a6167561765c75b1125
Author: Sascha Steinbiss 
Date:   Sun Aug 6 16:33:34 2017 +0200

dch -r
---
 debian/changelog | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/debian/changelog b/debian/changelog
index f42b4bc..6683c66 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,10 +1,10 @@
-genometools (1.5.10+ds-1) UNRELEASED; urgency=medium
+genometools (1.5.10+ds-1) unstable; urgency=medium
 
   * New upstream release.
   * Drop and update patches applied upstream.
   * Bump Standards-Version.
 
- -- Sascha Steinbiss   Sun, 06 Aug 2017 15:59:14 +0200
+ -- Sascha Steinbiss   Sun, 06 Aug 2017 16:33:26 +0200
 
 genometools (1.5.9+ds-5) unstable; urgency=medium
 

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[med-svn] [genometools] 03/03: drop obsolete dbg package

2017-08-06 Thread Sascha Steinbiss 
This is an automated email from the git hooks/post-receive script.

satta pushed a commit to branch master
in repository genometools.

commit 9b4fe81091b95d934cb19e6833bd704d2453bea0
Author: Sascha Steinbiss 
Date:   Sun Aug 6 16:42:53 2017 +0200

drop obsolete dbg package
---
 debian/changelog |  1 +
 debian/control   | 12 
 debian/rules |  3 ---
 3 files changed, 1 insertion(+), 15 deletions(-)

diff --git a/debian/changelog b/debian/changelog
index 6683c66..dab1334 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -3,6 +3,7 @@ genometools (1.5.10+ds-1) unstable; urgency=medium
   * New upstream release.
   * Drop and update patches applied upstream.
   * Bump Standards-Version.
+  * Drop obsolete -dbg package.
 
  -- Sascha Steinbiss   Sun, 06 Aug 2017 16:33:26 +0200
 
diff --git a/debian/control b/debian/control
index 1670f1e..13ebab9 100644
--- a/debian/control
+++ b/debian/control
@@ -109,18 +109,6 @@ Description: documentation for GenomeTools
  annotation handling, sequence compression, index structure generation and
  access, annotation visualization, and much more.
 
-Package: genometools-dbg
-Architecture: amd64 arm64 armel armhf i386 mips mipsel powerpc ppc64el s390x 
alpha hppa hurd-i386 kfreebsd-amd64 m68k mips64el kfreebsd-i386 ppc64 sh4 x32
-Section: debug
-Priority: extra
-Depends: ${shlibs:Depends},
- ${misc:Depends},
- genometools (= ${binary:Version}) | libgenometools0 (= 
${binary:Version})
-Description: versatile genome analysis toolkit, with debug symbols
- This package contains debug information stripped from the GenomeTools.
- You may decide to install it to help identifying issues, typically
- to help communication with upstream developers.
-
 Package: python-genometools
 Architecture: all
 Section: python
diff --git a/debian/rules b/debian/rules
index 2bb7a87..147df52 100755
--- a/debian/rules
+++ b/debian/rules
@@ -65,6 +65,3 @@ override_dh_auto_install:
  x32=$(X32) 64bit=$(64BIT) errorcheck=no prefix=$(DESTDIR)/usr
dh_auto_install --sourcedirectory=gtpython \
  --destdir=$(CURDIR)/debian/python-genometools
-
-override_dh_strip:
-   dh_strip --dbg-package=genometools-dbg

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[med-svn] [genometools] 01/03: bump Standards-Version

2017-08-06 Thread Sascha Steinbiss 
This is an automated email from the git hooks/post-receive script.

satta pushed a commit to branch master
in repository genometools.

commit 0ef779cc9de858b3d69417106b568beea084ca96
Author: Sascha Steinbiss 
Date:   Sun Aug 6 16:27:49 2017 +0200

bump Standards-Version
---
 debian/changelog | 1 +
 debian/control   | 2 +-
 2 files changed, 2 insertions(+), 1 deletion(-)

diff --git a/debian/changelog b/debian/changelog
index 0bc9716..f42b4bc 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -2,6 +2,7 @@ genometools (1.5.10+ds-1) UNRELEASED; urgency=medium
 
   * New upstream release.
   * Drop and update patches applied upstream.
+  * Bump Standards-Version.
 
  -- Sascha Steinbiss   Sun, 06 Aug 2017 15:59:14 +0200
 
diff --git a/debian/control b/debian/control
index e55e038..1670f1e 100644
--- a/debian/control
+++ b/debian/control
@@ -32,7 +32,7 @@ Build-Depends: debhelper (>= 9),
docbook-xml,
faketime,
imagemagick
-Standards-Version: 3.9.8
+Standards-Version: 4.0.0
 Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/genometools.git
 Vcs-Git: https://anonscm.debian.org/git/debian-med/genometools.git
 Homepage: http://genometools.org

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[med-svn] [dcmtk] annotated tag debian/3.6.2-1_exp1 created (now 8c39a2a)

2017-08-06 Thread Gert Wollny 
This is an automated email from the git hooks/post-receive script.

gewo pushed a change to annotated tag debian/3.6.2-1_exp1
in repository dcmtk.

at  8c39a2a   (tag)
   tagging  10369246a7400d4d902c38800097e334b270bd1c (commit)
  replaces  debian/3.6.1_20170228-2
 tagged by  Gert Wollny
on  Sun Aug 6 11:49:02 2017 +

- Log -
dcmtk Debian release 3.6.2-1~exp1

Gert Wollny (11):
  merge conflicts in upstream
  New upstream version 3.6.2
  Updated version 3.6.2 from 'upstream/3.6.2'
  Update for new release
  refresh patch 04
  correct CharLS patch
  d/rules: remove obsolete correction
  Update copyright and rules
  Update copyright and rules
  enable c++11
  add rule to provide manpage for msgserv

---

No new revisions were added by this update.

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[med-svn] [dcmtk] tag upstream/3.6.2 created (now 65c0023)

2017-08-06 Thread Gert Wollny 
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gewo pushed a change to tag upstream/3.6.2
in repository dcmtk.

at  65c0023   (commit)
No new revisions were added by this update.

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[med-svn] [dcmtk] 05/10: correct CharLS patch

2017-08-06 Thread Gert Wollny 
This is an automated email from the git hooks/post-receive script.

gewo pushed a commit to branch master
in repository dcmtk.

commit fad9ad9ad784d323ded8d4a54801e4aef6016fd4
Author: Gert Wollny 
Date:   Wed Aug 2 15:25:59 2017 +

correct CharLS patch
---
 debian/patches/02_system_charls.patch | 8 
 1 file changed, 8 insertions(+)

diff --git a/debian/patches/02_system_charls.patch 
b/debian/patches/02_system_charls.patch
index e7b0f22..2d31a02 100644
--- a/debian/patches/02_system_charls.patch
+++ b/debian/patches/02_system_charls.patch
@@ -73,3 +73,11 @@ Forwarded: no
 -  DCMTK_TARGET_LINK_MODULES(${PROGRAM} dcmjpls charls dcmimage dcmimgle 
dcmdata oflog ofstd ofstd)
 +  DCMTK_TARGET_LINK_MODULES(${PROGRAM} dcmjpls CharLS dcmimage dcmimgle 
dcmdata oflog ofstd ofstd)
  ENDFOREACH(PROGRAM)
+--- a/dcmjpls/libsrc/CMakeLists.txt
 b/dcmjpls/libsrc/CMakeLists.txt
+@@ -4,4 +4,4 @@
+ # create library from source files
+ DCMTK_ADD_LIBRARY(dcmjpls djcparam djdecode djencode djrparam djcodecd 
djutils djcodece)
+ 
+-DCMTK_TARGET_LINK_MODULES(dcmjpls ofstd oflog dcmdata dcmimgle dcmimage 
charls)
++DCMTK_TARGET_LINK_MODULES(dcmjpls ofstd oflog dcmdata dcmimgle dcmimage 
CharLS)

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[med-svn] [dcmtk] 03/10: Update for new release

2017-08-06 Thread Gert Wollny 
This is an automated email from the git hooks/post-receive script.

gewo pushed a commit to branch master
in repository dcmtk.

commit 411e319684bcb121b009e5b4153d01f05e4036db
Author: Gert Wollny 
Date:   Wed Aug 2 15:15:03 2017 +

Update for new release
---
 debian/changelog   | 10 
 debian/control |  4 +-
 debian/libdcmtk11.install  |  2 -
 debian/libdcmtk12.install  |  2 +
 ...tian-overrides => libdcmtk12.lintian-overrides} |  6 +--
 debian/patches/02_system_charls.patch  | 57 +-
 debian/patches/03_datadic_install.patch| 27 +-
 ...4_Fixed-OFoptional-by-introducing-OFalign.patch | 47 ++
 debian/patches/05_performance.patch|  8 +--
 debian/patches/08_remove_system_processor.patch|  8 +--
 debian/patches/09_round_time.patch | 23 +
 debian/patches/series  |  2 +-
 debian/rules   |  2 +-
 debian/watch   |  2 +-
 14 files changed, 73 insertions(+), 127 deletions(-)

diff --git a/debian/changelog b/debian/changelog
index 3db7128..961696a 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,13 @@
+dcmtk (3.6.2-1~exp1) experimental; urgency=medium
+
+  * Update d/watch
+  * New upstream version 3.6.2 Closes: #868867
+  * d/p/* refresh patches
+  * drop d/p/09_ because it was applied upstream   
+  * s/* update SO version
+
+ -- Gert Wollny   Wed, 02 Aug 2017 13:48:47 +
+
 dcmtk (3.6.1~20170228-2) unstable; urgency=medium
 
   * d/p/09: Improve numerical stability by rounding the time to 
diff --git a/debian/control b/debian/control
index 284f06f..de3cda4 100644
--- a/debian/control
+++ b/debian/control
@@ -38,7 +38,7 @@ Description: OFFIS DICOM toolkit command line utilities
  .
  Note: This version was compiled with libssl support.
 
-Package: libdcmtk11
+Package: libdcmtk12
 Architecture: any
 Section: libs
 Depends: ${misc:Depends},
@@ -67,7 +67,7 @@ Depends: libxml2-dev,
  libwrap0-dev,
  libcharls-dev,
  libtiff-dev,
- libdcmtk11 (= ${binary:Version}),
+ libdcmtk12 (= ${binary:Version}),
  ${misc:Depends}
 Suggests: dcmtk-doc
 Breaks: libinsighttoolkit4-dev (<< 4.9.0)
diff --git a/debian/libdcmtk11.install b/debian/libdcmtk11.install
deleted file mode 100644
index b936c36..000
--- a/debian/libdcmtk11.install
+++ /dev/null
@@ -1,2 +0,0 @@
-usr/lib/*.so.*
-usr/share/libdcmtk11/*.dic
diff --git a/debian/libdcmtk12.install b/debian/libdcmtk12.install
new file mode 100644
index 000..d0950e5
--- /dev/null
+++ b/debian/libdcmtk12.install
@@ -0,0 +1,2 @@
+usr/lib/*.so.*
+usr/share/libdcmtk12/*.dic
diff --git a/debian/libdcmtk11.lintian-overrides 
b/debian/libdcmtk12.lintian-overrides
similarity index 59%
rename from debian/libdcmtk11.lintian-overrides
rename to debian/libdcmtk12.lintian-overrides
index d3c05a4..e87a569 100644
--- a/debian/libdcmtk11.lintian-overrides
+++ b/debian/libdcmtk12.lintian-overrides
@@ -1,5 +1,5 @@
 # There is more than one library in one package bundles which makes perfectly
 # sense in this application but does not enable naming the library package 
apropriately
-libdcmtk11: package-name-doesnt-match-sonames
-libdcmtk11: embedded-library
-libdcmtk11: no-symbols-control-file
+libdcmtk12: package-name-doesnt-match-sonames
+libdcmtk12: embedded-library
+libdcmtk12: no-symbols-control-file
diff --git a/debian/patches/02_system_charls.patch 
b/debian/patches/02_system_charls.patch
index 3480bbf..e7b0f22 100644
--- a/debian/patches/02_system_charls.patch
+++ b/debian/patches/02_system_charls.patch
@@ -3,10 +3,8 @@ Author: Mathieu Malaterre 
 Bug-Debian: http://bugs.debian.org/705923
 Forwarded: no
 
-Index: b/dcmjpls/CMakeLists.txt
-===
 a/dcmjpls/CMakeLists.txt   2016-11-07 12:41:34.0 +0100
-+++ b/dcmjpls/CMakeLists.txt   2016-11-12 19:01:40.0 +0100
+--- a/dcmjpls/CMakeLists.txt
 b/dcmjpls/CMakeLists.txt
 @@ -2,6 +2,6 @@
  PROJECT(dcmjpls)
  
@@ -15,24 +13,8 @@ Index: b/dcmjpls/CMakeLists.txt
 +FOREACH(SUBDIR libsrc apps include)
ADD_SUBDIRECTORY(${SUBDIR})
  ENDFOREACH(SUBDIR)
-Index: b/dcmjpls/libsrc/CMakeLists.txt
-===
 a/dcmjpls/libsrc/CMakeLists.txt2016-11-07 12:41:34.0 +0100
-+++ b/dcmjpls/libsrc/CMakeLists.txt2016-11-12 19:01:40.0 +0100
-@@ -1,7 +1,7 @@
- # declare additional include directories
--INCLUDE_DIRECTORIES(${dcmjpls_SOURCE_DIR}/include ${ofstd_SOURCE_DIR}/include 
${oflog_SOURCE_DIR}/include ${dcmdata_SOURCE_DIR}/include 
${dcmimgle_SOURCE_DIR}/include ${dcmimage_SOURCE_DIR}/include 
${dcmjpls_SOURCE_DIR}/libcharls ${ZLIB_INCDIR})

[med-svn] [dcmtk] 02/10: Updated version 3.6.2 from 'upstream/3.6.2'

2017-08-06 Thread Gert Wollny 
This is an automated email from the git hooks/post-receive script.

gewo pushed a commit to branch master
in repository dcmtk.

commit f97f92d693a986deda678053ed9413f70cfe8934
Merge: d555318 65c0023
Author: Gert Wollny 
Date:   Wed Aug 2 15:13:14 2017 +

Updated version 3.6.2 from 'upstream/3.6.2'

with Debian dir 71b1d69e7b3011c2fbea9182243abf869c484e4f

 ANNOUNCE   |  343 +-
 CHANGES|8 +-
 CMake/3rdparty.cmake   |   62 +-
 CMake/CTest/CTestCustom.cmake  |   79 -
 CMake/CTest/CTestCustomAndroid.cmake.in|   98 +
 CMake/CTest/CTestCustomWine.cmake.in   |   17 +
 CMake/CTest/dcmtkCTestConfig.cmake.in  |   36 -
 CMake/CTest/dcmtkCTestRun.cmake.in |   18 +
 CMake/CTest/dcmtkCTestRunAndroid.cmake.in  |   23 +-
 CMake/CTest/dcmtkCTestRunExhaustive.cmake  |6 +
 CMake/CTest/dcmtkCTestRunWine.cmake.in |   23 +
 CMake/CheckFunctionWithHeaderExists.cmake  |9 +-
 CMake/DCMTKConfig.cmake.in |   18 +-
 ...KConfig.cmake26.in => DCMTKConfig.old_cmake.in} |   20 +-
 CMake/GenerateCMakeExports.cmake   |   20 +-
 CMake/GenerateDCMTKConfigure.cmake |  577 +++-
 CMake/android.toolchain.cmake  | 1812 ---
 CMake/dcmtkAfterModules.cmake  |6 +-
 CMake/dcmtkMacros.cmake|   92 +-
 CMake/dcmtkPrepare.cmake   |  187 +-
 CMake/dcmtkTryCompile.cmake|8 +-
 CMake/dcmtkTryRun.cmake|   45 +-
 CMake/dcmtkUseAndroidSDK.cmake |  155 +-
 CMake/dcmtkUseWine.cmake   |   68 +-
 CMake/dcmtkWinePath.reg.in |4 +
 CMake/osconfig.h.in|  130 +-
 CMakeLists.txt |  105 +-
 COPYRIGHT  |  473 ++-
 CREDITS|5 +-
 INSTALL|  773 +++--
 VERSION|2 +-
 config/Makefile.def.in |3 +-
 config/Makefile.in |4 +-
 config/aclocal.m4  |   44 +-
 config/configure   | 1666 +-
 config/configure.in|  356 ++-
 config/docs/CMakeLists.txt |2 +-
 config/docs/cxx11.dox  |  105 +-
 config/docs/macros.txt |   88 +-
 config/include/dcmtk/config/osconfig.h.in  |   71 +-
 config/stdcxx.m4   |  980 ++
 config/tests/algo.cc   |   58 +
 config/{ => tests}/arith.cc|   46 +-
 config/tests/cxx11.cc  |  303 ++
 config/tests/lfs.c |   30 +
 config/tests/lfs64.cc  |   29 +
 config/tests/limits.cc |   44 +
 config/tests/list.cc   |   69 +
 config/tests/map.cc|   59 +
 config/tests/memory.cc |   55 +
 config/tests/stack.cc  |   44 +
 config/tests/string.cc |   49 +
 config/tests/syserr.cc |   58 +
 config/tests/ttraits.cc|   65 +
 config/tests/tuple.cc  |   47 +
 config/tests/vector.cc |   96 +
 dcmdata/CMakeLists.txt |2 +-
 dcmdata/apps/Makefile.dep  |  144 +-
 dcmdata/apps/Makefile.in   |   30 +-
 dcmdata/apps/dcm2json.cc   |   27 +-
 dcmdata/apps/dcmconv.cc|   12 +-
 dcmdata/apps/dcmcrle.cc|   11 +-
 dcmdata/apps/dcmdrle.cc|   11 +-
 dcmdata/apps/dcmdump.cc|   49 +-
 dcmdata/apps/dump2dcm.cc   |   12 +-
 dcmdata/apps/pdf2dcm.cc|   12 +-
 dcmdata/apps/xml2dcm.cc|7 +-
 dcmdata/data/CMakeLists.txt|9 +-
 dcmdata/data/dicom.dic |   85 +-
 dcmdata/docs/CMakeLists.txt|2 +-
 dcmdata/docs/dcm2json.man  |   58 +-
 dcmdata/docs/dcm2pdf.man   |   26 +-
 dcmdata/docs/dcm2xml.man   |   42 +-
 dcmdata/docs/dcmconv.man   |   30 +-

[med-svn] [dcmtk] 09/10: enable c++11

2017-08-06 Thread Gert Wollny 
This is an automated email from the git hooks/post-receive script.

gewo pushed a commit to branch master
in repository dcmtk.

commit 1cf221ce24a13fd322ec914ba6ed1f98deded7d0
Author: Gert Wollny 
Date:   Sun Aug 6 08:59:31 2017 +

enable c++11
---
 debian/changelog | 1 +
 debian/rules | 3 ++-
 2 files changed, 3 insertions(+), 1 deletion(-)

diff --git a/debian/changelog b/debian/changelog
index cbb51cc..a96a375 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -7,6 +7,7 @@ dcmtk (3.6.2-1~exp1) experimental; urgency=medium
   * s/* update SO version
   * d/copyright: add new files to copyright
   * d/rules: drop more test programs and add manpage for msgserv
+  * d/rules enable use of C++11 features
 
  -- Gert Wollny   Wed, 02 Aug 2017 13:48:47 +
 
diff --git a/debian/rules b/debian/rules
index cf368e8..531490d 100755
--- a/debian/rules
+++ b/debian/rules
@@ -40,7 +40,8 @@ CMAKE_EXTRA_FLAGS += -DCMAKE_BUILD_TYPE:STRING=None \
  -DCMAKE_VERBOSE_MAKEFILE=ON \
  -DDCMTK_INSTALL_DATDIC:STRING=share/libdcmtk12 \
  -DCMAKE_SKIP_RPATH:BOOL=OFF \
- -DDCMTK_USE_CXX11_STL:BOOL=ON
+ -DDCMTK_USE_CXX11_STL:BOOL=ON \
+ -DDCMTK_ENABLE_CXX11:BOOL=ON
 
 
 override_dh_auto_configure:

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[med-svn] [dcmtk] 06/10: d/rules: remove obsolete correction

2017-08-06 Thread Gert Wollny 
This is an automated email from the git hooks/post-receive script.

gewo pushed a commit to branch master
in repository dcmtk.

commit 9782e48093554c54a6f69781a155ad48fc62eb33
Author: Gert Wollny 
Date:   Wed Aug 2 15:35:13 2017 +

d/rules: remove obsolete correction
---
 debian/rules | 1 -
 1 file changed, 1 deletion(-)

diff --git a/debian/rules b/debian/rules
index e23c0a6..8b35bf2 100755
--- a/debian/rules
+++ b/debian/rules
@@ -66,7 +66,6 @@ override_dh_auto_install-arch:
 
 override_dh_auto_install-indep:
DESTDIR=$(CURDIR)/debian/tmp $(MAKE) -C obj-*/doxygen install 
-   rm debian/tmp/usr/share/man/man1/_*.1
 
 override_dh_installdocs:
dh_installdocs

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[med-svn] [dcmtk] branch upstream updated (d433845 -> 65c0023)

2017-08-06 Thread Gert Wollny 
This is an automated email from the git hooks/post-receive script.

gewo pushed a change to branch upstream
in repository dcmtk.

  from  d433845   merge conflicts in upstream
   new  65c0023   New upstream version 3.6.2

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 ANNOUNCE   |  343 +-
 CHANGES|8 +-
 CMake/3rdparty.cmake   |   62 +-
 CMake/CTest/CTestCustom.cmake  |   79 -
 CMake/CTest/CTestCustomAndroid.cmake.in|   98 +
 CMake/CTest/CTestCustomWine.cmake.in   |   17 +
 CMake/CTest/dcmtkCTestConfig.cmake.in  |   36 -
 CMake/CTest/dcmtkCTestRun.cmake.in |   18 +
 CMake/CTest/dcmtkCTestRunAndroid.cmake.in  |   23 +-
 CMake/CTest/dcmtkCTestRunExhaustive.cmake  |6 +
 CMake/CTest/dcmtkCTestRunWine.cmake.in |   23 +
 CMake/CheckFunctionWithHeaderExists.cmake  |9 +-
 CMake/DCMTKConfig.cmake.in |   18 +-
 ...KConfig.cmake26.in => DCMTKConfig.old_cmake.in} |   20 +-
 CMake/GenerateCMakeExports.cmake   |   20 +-
 CMake/GenerateDCMTKConfigure.cmake |  577 +++-
 CMake/android.toolchain.cmake  | 1812 ---
 CMake/dcmtkAfterModules.cmake  |6 +-
 CMake/dcmtkMacros.cmake|   92 +-
 CMake/dcmtkPrepare.cmake   |  187 +-
 CMake/dcmtkTryCompile.cmake|8 +-
 CMake/dcmtkTryRun.cmake|   45 +-
 CMake/dcmtkUseAndroidSDK.cmake |  155 +-
 CMake/dcmtkUseWine.cmake   |   68 +-
 CMake/dcmtkWinePath.reg.in |4 +
 CMake/osconfig.h.in|  130 +-
 CMakeLists.txt |  105 +-
 COPYRIGHT  |  473 ++-
 CREDITS|5 +-
 INSTALL|  773 +++--
 VERSION|2 +-
 config/Makefile.def.in |3 +-
 config/Makefile.in |4 +-
 config/aclocal.m4  |   44 +-
 config/configure   | 1666 +-
 config/configure.in|  356 ++-
 config/docs/CMakeLists.txt |2 +-
 config/docs/cxx11.dox  |  105 +-
 config/docs/macros.txt |   88 +-
 config/include/dcmtk/config/osconfig.h.in  |   71 +-
 config/stdcxx.m4   |  980 ++
 config/tests/algo.cc   |   58 +
 config/{ => tests}/arith.cc|   46 +-
 config/tests/cxx11.cc  |  303 ++
 config/tests/lfs.c |   30 +
 config/tests/lfs64.cc  |   29 +
 config/tests/limits.cc |   44 +
 config/tests/list.cc   |   69 +
 config/tests/map.cc|   59 +
 config/tests/memory.cc |   55 +
 config/tests/stack.cc  |   44 +
 config/tests/string.cc |   49 +
 config/tests/syserr.cc |   58 +
 config/tests/ttraits.cc|   65 +
 config/tests/tuple.cc  |   47 +
 config/tests/vector.cc |   96 +
 dcmdata/CMakeLists.txt |2 +-
 dcmdata/apps/Makefile.dep  |  144 +-
 dcmdata/apps/Makefile.in   |   30 +-
 dcmdata/apps/dcm2json.cc   |   27 +-
 dcmdata/apps/dcmconv.cc|   12 +-
 dcmdata/apps/dcmcrle.cc|   11 +-
 dcmdata/apps/dcmdrle.cc|   11 +-
 dcmdata/apps/dcmdump.cc|   49 +-
 dcmdata/apps/dump2dcm.cc   |   12 +-
 dcmdata/apps/pdf2dcm.cc|   12 +-
 dcmdata/apps/xml2dcm.cc|7 +-
 dcmdata/data/CMakeLists.txt|9 +-
 dcmdata/data/dicom.dic |   85 +-
 dcmdata/docs/CMakeLists.txt|2 +-
 dcmdata/docs/dcm2json.man  |   58 +-
 dcmdata/docs/dcm2pdf.man   |   26 +-
 dcmdata/docs/dcm2xml.man

[med-svn] [dcmtk] 07/10: Update copyright and rules

2017-08-06 Thread Gert Wollny 
This is an automated email from the git hooks/post-receive script.

gewo pushed a commit to branch master
in repository dcmtk.

commit 5e7fc9aa63d78d102d12e02f650b83a3b1575460
Author: Gert Wollny 
Date:   Thu Aug 3 11:09:49 2017 +

Update copyright and rules
---
 debian/changelog |  2 ++
 debian/copyright | 20 +---
 debian/rules |  7 ++-
 3 files changed, 25 insertions(+), 4 deletions(-)

diff --git a/debian/changelog b/debian/changelog
index 961696a..cbb51cc 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -5,6 +5,8 @@ dcmtk (3.6.2-1~exp1) experimental; urgency=medium
   * d/p/* refresh patches
   * drop d/p/09_ because it was applied upstream   
   * s/* update SO version
+  * d/copyright: add new files to copyright
+  * d/rules: drop more test programs and add manpage for msgserv
 
  -- Gert Wollny   Wed, 02 Aug 2017 13:48:47 +
 
diff --git a/debian/copyright b/debian/copyright
index f132026..13e9278 100644
--- a/debian/copyright
+++ b/debian/copyright
@@ -222,6 +222,20 @@ Files: oflog/include/dcmtk/oflog/log4judp.h
 Copyright: 2012 Siva Chandran P
 License: Apache-2.0 
 
+Files: config/stdcxx.m4
+Copyright: 2008 Benjamin Kosnik 
+ 2012 Zack Weinberg 
+ 2013 Roy Stogner 
+ 2014, 2015 Google Inc.; contributed by Alexey Sokolov 
+ 2015 Paul Norman 
+ 2015 Moritz Klammler 
+ 2016 Krzesimir Nowak 
+License: stdcxx-m4
+ Copying and distribution of this file, with or without modification, are
+ permitted in any medium without royalty provided the copyright notice
+ and this notice are preserved.  This file is offered as-is, without any
+ warranty.
+
 Files:  oflog/include/dcmtk/oflog/appender.h
 oflog/include/dcmtk/oflog/config/win32.h
 oflog/include/dcmtk/oflog/configrt.h
@@ -396,7 +410,7 @@ Files: dcmrt/include/dcmtk/dcmrt/drttypes.h
dcmrt/libsrc/drtbvcps.cc
dcmrt/libsrc/drtmas.cc
 Copyright: 2008-2012, OFFIS e.V. and ICSMED AG, Oldenburg, Germany
-   2013-2016, J. Riesmeier, Oldenburg, Germany
+   2013-2017, J. Riesmeier, Oldenburg, Germany
 License: BSD-3-clause-Riesmeier
 
 Files: dcmrt/include/dcmtk/dcmrt/drmdose.h
@@ -434,10 +448,10 @@ Files: dcmfg/include/dcmtk/dcmfg/fgframeanatomy.h
  dcmiod/libsrc/iodreferences.cc
  dcmiod/libsrc/modfloatingpointimagepixel.cc
  dcmiod/libsrc/modimagepixelbase.cc
-Copyright: Copyright (C) 2016, Open Connections GmbH
+ dcmdata/tests/tnewdcme.cc
+Copyright: Copyright (C) 2017, Open Connections GmbH
 License: OFFISeV
 
-
 Files: CMake/android.toolchain.cmake
 Copyright: 2010-2011, Ethan Rublee
2011-2014, Andrey Kamaev
diff --git a/debian/rules b/debian/rules
index 8b35bf2..7908539 100755
--- a/debian/rules
+++ b/debian/rules
@@ -51,6 +51,10 @@ override_dh_auto_build-arch:
#$(MAKE) -C obj-* man
dh_auto_build
 
+override_dh_installman:
+help2man --version-string 3.6.2 --no-info debian/dcmtk/usr/bin/msgserv 
 > msgserv.1
+dh_installman msgserv.1
+
 # Let's be smart with building doc
 override_dh_auto_build-indep:
$(MAKE) -C obj-* DOXYGEN
@@ -74,10 +78,11 @@ override_dh_installdocs:
 
 override_dh_install-arch:
dh_install # --list-missing
-   # wotsit ?
+   #remove test binaries 
rm ./debian/dcmtk/usr/bin/*_tests
rm ./debian/dcmtk/usr/bin/drttest
rm ./debian/dcmtk/usr/bin/mkreport
+   rm ./debian/dcmtk/usr/bin/wltest
 
 get-orig-source:
uscan --force-download --verbose --rename

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[med-svn] [dcmtk] 10/10: add rule to provide manpage for msgserv

2017-08-06 Thread Gert Wollny 
This is an automated email from the git hooks/post-receive script.

gewo pushed a commit to branch master
in repository dcmtk.

commit 10369246a7400d4d902c38800097e334b270bd1c
Author: Gert Wollny 
Date:   Sun Aug 6 09:26:46 2017 +

add rule to provide manpage for msgserv
---
 debian/changelog | 1 +
 debian/control   | 1 +
 debian/rules | 3 ++-
 3 files changed, 4 insertions(+), 1 deletion(-)

diff --git a/debian/changelog b/debian/changelog
index a96a375..17adc46 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -8,6 +8,7 @@ dcmtk (3.6.2-1~exp1) experimental; urgency=medium
   * d/copyright: add new files to copyright
   * d/rules: drop more test programs and add manpage for msgserv
   * d/rules enable use of C++11 features
+  * d/control: Add build dependency on help2man
 
  -- Gert Wollny   Wed, 02 Aug 2017 13:48:47 +
 
diff --git a/debian/control b/debian/control
index de3cda4..c8fc610 100644
--- a/debian/control
+++ b/debian/control
@@ -7,6 +7,7 @@ Section: science
 Priority: optional
 Build-Depends: cmake,
debhelper (>= 9),
+   help2man,
libcharls-dev,
libpng-dev,
libsndfile1-dev,
diff --git a/debian/rules b/debian/rules
index 531490d..3b027d5 100755
--- a/debian/rules
+++ b/debian/rules
@@ -53,7 +53,8 @@ override_dh_auto_build-arch:
dh_auto_build
 
 override_dh_installman:
-   help2man --version-string 3.6.2 --no-info debian/dcmtk/usr/bin/msgserv  
> msgserv.1
+   LD_LIBRARY_PATH=debian/libdcmtk12/usr/lib/ \
+   help2man --version-string 3.6.2 -n "msgserv: Sample message server for 
class DVPSIPCClient" --no-info debian/dcmtk/usr/bin/msgserv  > msgserv.1
dh_installman msgserv.1
 
 # Let's be smart with building doc

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[med-svn] [dcmtk] 04/10: refresh patch 04

2017-08-06 Thread Gert Wollny 
This is an automated email from the git hooks/post-receive script.

gewo pushed a commit to branch master
in repository dcmtk.

commit 0ec59a27fb9b28a44f8702f05a5837c487e7b7c0
Author: Gert Wollny 
Date:   Wed Aug 2 15:15:31 2017 +

refresh patch 04
---
 .../04_Fixed-OFoptional-by-introducing-OFalign.patch | 20 ++--
 1 file changed, 10 insertions(+), 10 deletions(-)

diff --git a/debian/patches/04_Fixed-OFoptional-by-introducing-OFalign.patch 
b/debian/patches/04_Fixed-OFoptional-by-introducing-OFalign.patch
index 8b07109..1d9fc5f 100644
--- a/debian/patches/04_Fixed-OFoptional-by-introducing-OFalign.patch
+++ b/debian/patches/04_Fixed-OFoptional-by-introducing-OFalign.patch
@@ -4,9 +4,9 @@ Date: Fri, 4 Jul 2014 12:02:51 +0200
 Subject: [PATCH] Fixed OFoptional by introducing OFalign?
 --- a/CMake/osconfig.h.in
 +++ b/CMake/osconfig.h.in
-@@ -1165,4 +1165,7 @@
- /* Define if the compiler supports __declspec(align) */
- #cmakedefine HAVE_DECLSPEC_ALIGN
+@@ -1162,4 +1162,7 @@
+ /* Define if we are supposed to use STL's system_error */
+ #cmakedefine HAVE_STL_SYSTEM_ERROR @HAVE_STL_SYSTEM_ERROR@
  
 +/* Define if the compiler supports __declspec(align) */
 +#cmakedefine HAVE_DECLSPEC_ALIGN
@@ -14,7 +14,7 @@ Subject: [PATCH] Fixed OFoptional by introducing OFalign?
  #endif /* !OSCONFIG_H*/
 --- a/config/aclocal.m4
 +++ b/config/aclocal.m4
-@@ -1963,6 +1963,47 @@
+@@ -1922,6 +1922,47 @@
  fi
  ])
  
@@ -64,9 +64,9 @@ Subject: [PATCH] Fixed OFoptional by introducing OFalign?
  dnl This macro checks if a given preprocessor symbol exists and is a string
 --- a/config/configure
 +++ b/config/configure
-@@ -16771,6 +16771,66 @@
- fi
- 
+@@ -16711,6 +16711,66 @@
+ fi
+ rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
  
 +{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for __alignof__" >&5
 +$as_echo_n "checking for __alignof__... " >&6; }
@@ -133,9 +133,9 @@ Subject: [PATCH] Fixed OFoptional by introducing OFalign?
  
 --- a/ofstd/tests/toption.cc
 +++ b/ofstd/tests/toption.cc
-@@ -43,6 +43,11 @@
- COUT << OFalignof(OFoptional) << ' ' << sizeof(OFoptional) 
<< OFendl;
- COUT << OFalignof(long) << ' ' << sizeof(long) << ' ' << 
OFalignof(OFoptional) << ' ' << sizeof(OFoptional) << OFendl;
+@@ -38,6 +38,11 @@
+ 
+ OFoptional o0( 3 ), o1, o2( OFnullopt );
  
 +COUT << OFalignof(OFoptional) << ' ' << sizeof(OFoptional) << 
OFendl;
 +COUT << OFalignof(OFoptional) << ' ' << sizeof(OFoptional) 
<< OFendl;

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[med-svn] [dcmtk] 08/10: Update copyright and rules

2017-08-06 Thread Gert Wollny 
This is an automated email from the git hooks/post-receive script.

gewo pushed a commit to branch master
in repository dcmtk.

commit 509f5767cb3de95436e9b3774e1f3f3dffb1bb43
Author: Gert Wollny 
Date:   Thu Aug 3 11:10:54 2017 +

Update copyright and rules
---
 debian/copyright | 31 ---
 debian/rules |  4 ++--
 2 files changed, 2 insertions(+), 33 deletions(-)

diff --git a/debian/copyright b/debian/copyright
index 13e9278..e133732 100644
--- a/debian/copyright
+++ b/debian/copyright
@@ -452,37 +452,6 @@ Files: dcmfg/include/dcmtk/dcmfg/fgframeanatomy.h
 Copyright: Copyright (C) 2017, Open Connections GmbH
 License: OFFISeV
 
-Files: CMake/android.toolchain.cmake
-Copyright: 2010-2011, Ethan Rublee
-   2011-2014, Andrey Kamaev
-License: BSD-3-clause-OpenCV
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are met:
- .
- 1.  Redistributions of source code must retain the above copyright notice,
- this list of conditions and the following disclaimer.
- .
- 2.  Redistributions in binary form must reproduce the above copyright notice,
- this list of conditions and the following disclaimer in the documentation
- and/or other materials provided with the distribution.
- .
- 3.  Neither the name of the copyright holder nor the names of its
- contributors may be used to endorse or promote products derived from this
- software without specific prior written permission.
- .
- THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
- AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
- IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
- ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
- LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
- CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
- SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
- INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
- CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
- ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
- POSSIBILITY OF SUCH DAMAGE.
-  
-
 License: OFFISeV
  This software and supporting documentation were developed by
  .
diff --git a/debian/rules b/debian/rules
index 7908539..cf368e8 100755
--- a/debian/rules
+++ b/debian/rules
@@ -52,8 +52,8 @@ override_dh_auto_build-arch:
dh_auto_build
 
 override_dh_installman:
-help2man --version-string 3.6.2 --no-info debian/dcmtk/usr/bin/msgserv 
 > msgserv.1
-dh_installman msgserv.1
+   help2man --version-string 3.6.2 --no-info debian/dcmtk/usr/bin/msgserv  
> msgserv.1
+   dh_installman msgserv.1
 
 # Let's be smart with building doc
 override_dh_auto_build-indep:

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[med-svn] [dcmtk] 01/01: pristine-tar data for dcmtk_3.6.2.orig.tar.gz

2017-08-06 Thread Gert Wollny 
This is an automated email from the git hooks/post-receive script.

gewo pushed a commit to branch pristine-tar
in repository dcmtk.

commit 8433eec67d091da49a9dda4516152e8665e81ec4
Author: Gert Wollny 
Date:   Wed Aug 2 15:13:14 2017 +

pristine-tar data for dcmtk_3.6.2.orig.tar.gz
---
 dcmtk_3.6.2.orig.tar.gz.delta | Bin 0 -> 115582 bytes
 dcmtk_3.6.2.orig.tar.gz.id|   1 +
 2 files changed, 1 insertion(+)

diff --git a/dcmtk_3.6.2.orig.tar.gz.delta b/dcmtk_3.6.2.orig.tar.gz.delta
new file mode 100644
index 000..a772fac
Binary files /dev/null and b/dcmtk_3.6.2.orig.tar.gz.delta differ
diff --git a/dcmtk_3.6.2.orig.tar.gz.id b/dcmtk_3.6.2.orig.tar.gz.id
new file mode 100644
index 000..22c0087
--- /dev/null
+++ b/dcmtk_3.6.2.orig.tar.gz.id
@@ -0,0 +1 @@
+8796105e1280d7fe25db7b10f676fc91da574cd2

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[med-svn] [dcmtk] branch pristine-tar updated (929d976 -> 8433eec)

2017-08-06 Thread Gert Wollny 
This is an automated email from the git hooks/post-receive script.

gewo pushed a change to branch pristine-tar
in repository dcmtk.

  from  929d976   Merge branch 'pristine-tar' of 
git+ssh://git.debian.org/git/debian-med/dcmtk into pristine-tar
   new  8433eec   pristine-tar data for dcmtk_3.6.2.orig.tar.gz

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 dcmtk_3.6.2.orig.tar.gz.delta | Bin 0 -> 115582 bytes
 dcmtk_3.6.2.orig.tar.gz.id|   1 +
 2 files changed, 1 insertion(+)
 create mode 100644 dcmtk_3.6.2.orig.tar.gz.delta
 create mode 100644 dcmtk_3.6.2.orig.tar.gz.id

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[med-svn] [dcmtk] branch master updated (d555318 -> 1036924)

2017-08-06 Thread Gert Wollny 
This is an automated email from the git hooks/post-receive script.

gewo pushed a change to branch master
in repository dcmtk.

  from  d555318   Update standards and run cme fix
  adds  d433845   merge conflicts in upstream
   new  65c0023   New upstream version 3.6.2
   new  f97f92d   Updated version 3.6.2 from 'upstream/3.6.2'
   new  411e319   Update for new release
   new  0ec59a2   refresh patch 04
   new  fad9ad9   correct CharLS patch
   new  9782e48   d/rules: remove obsolete correction
   new  5e7fc9a   Update copyright and rules
   new  509f576   Update copyright and rules
   new  1cf221c   enable c++11
   new  1036924   add rule to provide manpage for msgserv

The 10 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 ANNOUNCE   |  343 +-
 CHANGES|8 +-
 CMake/3rdparty.cmake   |   62 +-
 CMake/CTest/CTestCustom.cmake  |   79 -
 CMake/CTest/CTestCustomAndroid.cmake.in|   98 +
 CMake/CTest/CTestCustomWine.cmake.in   |   17 +
 CMake/CTest/dcmtkCTestConfig.cmake.in  |   36 -
 CMake/CTest/dcmtkCTestRun.cmake.in |   18 +
 CMake/CTest/dcmtkCTestRunAndroid.cmake.in  |   23 +-
 CMake/CTest/dcmtkCTestRunExhaustive.cmake  |6 +
 CMake/CTest/dcmtkCTestRunWine.cmake.in |   23 +
 CMake/CheckFunctionWithHeaderExists.cmake  |9 +-
 CMake/DCMTKConfig.cmake.in |   18 +-
 ...KConfig.cmake26.in => DCMTKConfig.old_cmake.in} |   20 +-
 CMake/GenerateCMakeExports.cmake   |   20 +-
 CMake/GenerateDCMTKConfigure.cmake |  577 +++-
 CMake/android.toolchain.cmake  | 1812 ---
 CMake/dcmtkAfterModules.cmake  |6 +-
 CMake/dcmtkMacros.cmake|   92 +-
 CMake/dcmtkPrepare.cmake   |  187 +-
 CMake/dcmtkTryCompile.cmake|8 +-
 CMake/dcmtkTryRun.cmake|   45 +-
 CMake/dcmtkUseAndroidSDK.cmake |  155 +-
 CMake/dcmtkUseWine.cmake   |   68 +-
 CMake/dcmtkWinePath.reg.in |4 +
 CMake/osconfig.h.in|  130 +-
 CMakeLists.txt |  105 +-
 COPYRIGHT  |  473 ++-
 CREDITS|5 +-
 INSTALL|  773 +++--
 VERSION|2 +-
 config/Makefile.def.in |3 +-
 config/Makefile.in |4 +-
 config/aclocal.m4  |   44 +-
 config/configure   | 1666 +-
 config/configure.in|  356 ++-
 config/docs/CMakeLists.txt |2 +-
 config/docs/cxx11.dox  |  105 +-
 config/docs/macros.txt |   88 +-
 config/include/dcmtk/config/osconfig.h.in  |   71 +-
 config/stdcxx.m4   |  980 ++
 config/tests/algo.cc   |   58 +
 config/{ => tests}/arith.cc|   46 +-
 config/tests/cxx11.cc  |  303 ++
 config/tests/lfs.c |   30 +
 config/tests/lfs64.cc  |   29 +
 config/tests/limits.cc |   44 +
 config/tests/list.cc   |   69 +
 config/tests/map.cc|   59 +
 config/tests/memory.cc |   55 +
 config/tests/stack.cc  |   44 +
 config/tests/string.cc |   49 +
 config/tests/syserr.cc |   58 +
 config/tests/ttraits.cc|   65 +
 config/tests/tuple.cc  |   47 +
 config/tests/vector.cc |   96 +
 dcmdata/CMakeLists.txt |2 +-
 dcmdata/apps/Makefile.dep  |  144 +-
 dcmdata/apps/Makefile.in   |   30 +-
 dcmdata/apps/dcm2json.cc   |   27 +-
 dcmdata/apps/dcmconv.cc|   12 +-
 dcmdata/apps/dcmcrle.cc|   11 +-
 dcmdata/apps/dcmdrle.cc|   11 +-
 dcmdata/apps/dcmdump.cc|   49 +-
 dcmdata/apps/dump2dcm.cc

[med-svn] [genometools] 01/01: pristine-tar data for genometools_1.5.10+ds.orig.tar.xz

2017-08-06 Thread Sascha Steinbiss 
This is an automated email from the git hooks/post-receive script.

satta pushed a commit to branch pristine-tar
in repository genometools.

commit 8edf7f6556af62723f19bbc0920dcd8132090996
Author: Sascha Steinbiss 
Date:   Sun Aug 6 15:45:45 2017 +0200

pristine-tar data for genometools_1.5.10+ds.orig.tar.xz
---
 genometools_1.5.10+ds.orig.tar.xz.delta | Bin 0 -> 143954 bytes
 genometools_1.5.10+ds.orig.tar.xz.id|   1 +
 2 files changed, 1 insertion(+)

diff --git a/genometools_1.5.10+ds.orig.tar.xz.delta 
b/genometools_1.5.10+ds.orig.tar.xz.delta
new file mode 100644
index 000..48aae2a
Binary files /dev/null and b/genometools_1.5.10+ds.orig.tar.xz.delta differ
diff --git a/genometools_1.5.10+ds.orig.tar.xz.id 
b/genometools_1.5.10+ds.orig.tar.xz.id
new file mode 100644
index 000..be7b9e1
--- /dev/null
+++ b/genometools_1.5.10+ds.orig.tar.xz.id
@@ -0,0 +1 @@
+388d7175ff17b89cbd41d93a9d3f088bb82e8157

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[med-svn] [genometools] branch upstream updated (a84e526 -> 17a2684)

2017-08-06 Thread Sascha Steinbiss 
This is an automated email from the git hooks/post-receive script.

satta pushed a change to branch upstream
in repository genometools.

  from  a84e526   Imported Upstream version 1.5.9+ds
   new  17a2684   New upstream version 1.5.10+ds

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 .travis.yml|   45 +-
 CHANGELOG  |   19 +-
 Makefile   |   15 +-
 VERSION|2 +-
 doc/RELEASE|4 -
 gtdata/modules/gtdoclib/docvisitorlatex.lua|   27 +-
 gtdata/modules/gtdoclib/gtscript_header.lp |1 -
 gtdata/modules/gtdoclib/libgenometools_header.lp   |1 -
 gtpython/README|2 +-
 scripts/SEmatch.rb |  151 +
 scripts/all-vs-all.sh  |6 +-
 scripts/alloutputoptions.rb|   44 +-
 scripts/build_dists.sh |8 +
 scripts/check-fstperquery.rb   |   55 +
 scripts/cleanpp.sh |1 +
 scripts/cmp_db_query_exch.rb   |4 +-
 scripts/collect-mappings.rb|   26 -
 scripts/convert2myersformat.rb |   77 +-
 scripts/cutsequences.rb|   61 +
 scripts/enumkmers.rb   |   26 +
 scripts/esq-in-bytes.sh|   25 +-
 scripts/estim-kmer-size.rb |   25 +
 scripts/evalue-filter.rb   |   29 +
 scripts/extract-seed.rb|   18 +
 scripts/fasta.rb   |  112 +
 scripts/findfasta.rb   |   28 +-
 scripts/gen-display-struct.rb  |  226 +
 scripts/gen-intsets.rb |   35 +-
 scripts/gen-radixsort-ip.rb|  466 +-
 scripts/gen-radixsort-ip.sh|1 +
 scripts/gfa2lint.rb|  148 +
 scripts/manyshort-somelong.rb  |   23 +
 scripts/matches-compare.rb |  396 +
 scripts/matches2ani.rb |   52 +
 scripts/mk_ft_longest_common.rb|  258 +
 scripts/print_sequence.rb  |7 +
 scripts/reverse-complement.rb  |   19 +
 scripts/run-se-da.sh   |4 +-
 scripts/se-permutation.rb  |   45 +
 scripts/seeds2maxmatches.rb|   95 +
 scripts/sensitivity-test.rb|4 +-
 scripts/sim-read-mapping.sh|   60 +-
 scripts/single-read-mapping.sh |   30 +
 scripts/skmake.rb  |   15 +-
 scripts/travis_installdeps.sh  |   13 +
 scripts/{alloutputoptions.rb => turnwheel.rb}  |   23 +-
 src/annotationsketch/custom_track_gc_content.c |4 +-
 src/core/accspecialrange.gen   |   50 +
 src/core/alphabet.c|   25 +-
 src/core/arraydef.h|   41 +-
 src/core/bitbuffer.c   |  301 +-
 src/core/bitbuffer.h   |   70 +-
 src/core/bitpackstringsimpleop.h   |   11 +-
 src/core/colorspace.h  |6 +-
 src/core/csvline_reader.c  |  302 +
 src/core/csvline_reader.h  |   85 +
 src/core/encseq.c  |   90 +-
 src/core/encseq.h  |   19 +-
 src/core/fptr_api.h|2 +-
 src/core/gtdatapath.c  |   15 +-
 src/core/mail_address.h|2 +-
 src/core/radix_sort.c  |  241 +-
 src/core/radix_sort.h  |   11 +
 src/core/radixsort-ip-flba.inc |  364 +
 src/core/radixsort-ip-uint64keypair.inc|  211 +-
 src/core/radixsort-ip-ulong.inc|  203 +-
 src/core/radixsort-ip-ulongpair.inc|  203 +-
 src/core/str.c |7 +
 src/core/str.h |2 +
 src/core/timer.c   |   45 +-
 src/core/timer_api.h   |3 +
 src/core/unused_api.h  |6 +
 src/extended/alignment.c   |  164 +-

[med-svn] [genometools] 03/03: WIP: ner upstream

2017-08-06 Thread Sascha Steinbiss 
This is an automated email from the git hooks/post-receive script.

satta pushed a commit to branch master
in repository genometools.

commit 80bbe17288c0e29e520fcfc92f7ec7274c427962
Author: Sascha Steinbiss 
Date:   Sun Aug 6 16:14:27 2017 +0200

WIP: ner upstream
---
 debian/changelog  |  7 +++
 debian/genometools-common.install | 19 +--
 debian/patches/adding_soname  |  4 ++--
 debian/patches/libbam-fix |  6 +++---
 debian/patches/reproducible   |  4 ++--
 debian/patches/series |  2 --
 6 files changed, 15 insertions(+), 27 deletions(-)

diff --git a/debian/changelog b/debian/changelog
index 42b65dd..0bc9716 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,10 @@
+genometools (1.5.10+ds-1) UNRELEASED; urgency=medium
+
+  * New upstream release.
+  * Drop and update patches applied upstream.
+
+ -- Sascha Steinbiss   Sun, 06 Aug 2017 15:59:14 +0200
+
 genometools (1.5.9+ds-5) unstable; urgency=medium
 
   * Change test data to make run less problematic.
diff --git a/debian/genometools-common.install 
b/debian/genometools-common.install
index 1ffbe54..7e21d50 100644
--- a/debian/genometools-common.install
+++ b/debian/genometools-common.install
@@ -1,18 +1 @@
-usr/bin/gtdata/doc usr/share/genometools/gtdata
-usr/bin/gtdata/obo_files usr/share/genometools/gtdata
-usr/bin/gtdata/sketch usr/share/genometools/gtdata
-usr/bin/gtdata/spec usr/share/genometools/gtdata
-usr/bin/gtdata/trans usr/share/genometools/gtdata
-usr/bin/gtdata/xrf_abbr usr/share/genometools/gtdata
-usr/bin/gtdata/modules/fileutils.lua usr/share/genometools/gtdata/modules
-usr/bin/gtdata/modules/gtdoclib.lua usr/share/genometools/gtdata/modules
-usr/bin/gtdata/modules/gtdoclib usr/share/genometools/gtdata/modules
-usr/bin/gtdata/modules/gtlua.lua usr/share/genometools/gtdata/modules
-usr/bin/gtdata/modules/gtlua usr/share/genometools/gtdata/modules
-usr/bin/gtdata/modules/gtmodulehelper.lua usr/share/genometools/gtdata/modules
-usr/bin/gtdata/modules/stringext.lua usr/share/genometools/gtdata/modules
-usr/bin/gtdata/modules/warning.lua usr/share/genometools/gtdata/modules
-usr/bin/gtdata/modules/gtlua.lua usr/share/genometools/gtdata/modules
-usr/bin/gtdata/modules/external/md5.lua 
usr/share/genometools/gtdata/modules/external
-usr/bin/gtdata/modules/external/re.lua 
usr/share/genometools/gtdata/modules/external
-
+usr/share/genometools/gtdata usr/share/genometools
diff --git a/debian/patches/adding_soname b/debian/patches/adding_soname
index 5d59b48..bd33df8 100644
--- a/debian/patches/adding_soname
+++ b/debian/patches/adding_soname
@@ -13,7 +13,7 @@ Author: Sascha Steinbiss 
  
  # compiled executables
  GTMAIN_SRC:=src/gt.c src/gtr.c src/gtt.c src/interactive.c
-@@ -622,8 +623,9 @@
+@@ -628,8 +629,9 @@
$(V_ECHO) "[link $(@F)]"
$(V_DO)test -d $(@D) || mkdir -p $(@D)
$(V_DO)$(CC) $(EXP_LDFLAGS) $(VERSION_SCRIPT_PARAM) \
@@ -25,7 +25,7 @@ Author: Sascha Steinbiss 
  
  define PROGRAM_template
  $(1): $(2)
-@@ -990,7 +992,8 @@
+@@ -1003,7 +1005,8 @@
$(RANLIB) $(prefix)/lib/libgenometools.a
  endif
  ifneq ($(sharedlib),no)
diff --git a/debian/patches/libbam-fix b/debian/patches/libbam-fix
index 72cef54..6ab230c 100644
--- a/debian/patches/libbam-fix
+++ b/debian/patches/libbam-fix
@@ -5,7 +5,7 @@ Author: Sascha Steinbiss 
 
 --- a/Makefile
 +++ b/Makefile
-@@ -601,6 +601,10 @@
+@@ -607,6 +607,10 @@
$(V_DO)$(RANLIB) $@
  endif
  
@@ -16,7 +16,7 @@ Author: Sascha Steinbiss 
  lib/libgenometools.a: obj/gt_config.h  $(LIBGENOMETOOLS_OBJ)
$(V_ECHO) "[link $(@F)]"
$(V_DO)test -d $(@D) || mkdir -p $(@D)
-@@ -619,13 +623,14 @@
+@@ -625,13 +629,14 @@
$(LIBGENOMETOOLS_OBJ) \
$(ADDITIONAL_SO_DEPS) \
$(ADDITIONAL_ZLIBS) \
@@ -32,7 +32,7 @@ Author: Sascha Steinbiss 
  
  define PROGRAM_template
  $(1): $(2)
-@@ -638,46 +643,55 @@
+@@ -644,46 +649,55 @@
  
  $(eval $(call PROGRAM_template, bin/gt, $(GTMAIN_OBJ) $(TOOLS_OBJ) \
  lib/libgenometools.a \
diff --git a/debian/patches/reproducible b/debian/patches/reproducible
index ea10bcf..983636d 100644
--- a/debian/patches/reproducible
+++ b/debian/patches/reproducible
@@ -10,7 +10,7 @@ Author: Sascha Steinbiss 
  INCLUDEOPT:=-I$(CURDIR)/src -I$(CURDIR)/obj
  
  ifeq ($(shell pkg-config --version > /dev/null 2> /dev/null; echo $$?),0)
-@@ -706,7 +707,7 @@
+@@ -712,7 +713,7 @@
$(V_DO)(echo '#ifndef GT_CONFIG_H' ;\
echo '#define GT_CONFIG_H' ;\
echo '#define GT_CC "'`$(CC) --version | head -n 1`\" ;\
@@ -19,7 +19,7 @@ Author: Sascha Steinbiss 
echo

[med-svn] [genometools] branch pristine-tar updated (eff2166 -> 8edf7f6)

2017-08-06 Thread Sascha Steinbiss 
This is an automated email from the git hooks/post-receive script.

satta pushed a change to branch pristine-tar
in repository genometools.

  from  eff2166   pristine-tar data for genometools_1.5.9+ds.orig.tar.xz
   new  8edf7f6   pristine-tar data for genometools_1.5.10+ds.orig.tar.xz

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 genometools_1.5.10+ds.orig.tar.xz.delta | Bin 0 -> 143954 bytes
 genometools_1.5.10+ds.orig.tar.xz.id|   1 +
 2 files changed, 1 insertion(+)
 create mode 100644 genometools_1.5.10+ds.orig.tar.xz.delta
 create mode 100644 genometools_1.5.10+ds.orig.tar.xz.id

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[med-svn] [genometools] 02/03: Merge tag 'upstream/1.5.10+ds'

2017-08-06 Thread Sascha Steinbiss 
This is an automated email from the git hooks/post-receive script.

satta pushed a commit to branch master
in repository genometools.

commit 895438c4ec2e91ab7970fc7f2611c58df10d5403
Merge: 5276924 17a2684
Author: Sascha Steinbiss 
Date:   Sun Aug 6 15:45:45 2017 +0200

Merge tag 'upstream/1.5.10+ds'

Upstream version 1.5.10+ds

 .travis.yml|   45 +-
 CHANGELOG  |   19 +-
 Makefile   |   15 +-
 VERSION|2 +-
 doc/RELEASE|4 -
 gtdata/modules/gtdoclib/docvisitorlatex.lua|   27 +-
 gtdata/modules/gtdoclib/gtscript_header.lp |1 -
 gtdata/modules/gtdoclib/libgenometools_header.lp   |1 -
 gtpython/README|2 +-
 scripts/SEmatch.rb |  151 +
 scripts/all-vs-all.sh  |6 +-
 scripts/alloutputoptions.rb|   44 +-
 scripts/build_dists.sh |8 +
 scripts/check-fstperquery.rb   |   55 +
 scripts/cleanpp.sh |1 +
 scripts/cmp_db_query_exch.rb   |4 +-
 scripts/collect-mappings.rb|   26 -
 scripts/convert2myersformat.rb |   77 +-
 scripts/cutsequences.rb|   61 +
 scripts/enumkmers.rb   |   26 +
 scripts/esq-in-bytes.sh|   25 +-
 scripts/estim-kmer-size.rb |   25 +
 scripts/evalue-filter.rb   |   29 +
 scripts/extract-seed.rb|   18 +
 scripts/fasta.rb   |  112 +
 scripts/findfasta.rb   |   28 +-
 scripts/gen-display-struct.rb  |  226 +
 scripts/gen-intsets.rb |   35 +-
 scripts/gen-radixsort-ip.rb|  466 +-
 scripts/gen-radixsort-ip.sh|1 +
 scripts/gfa2lint.rb|  148 +
 scripts/manyshort-somelong.rb  |   23 +
 scripts/matches-compare.rb |  396 +
 scripts/matches2ani.rb |   52 +
 scripts/mk_ft_longest_common.rb|  258 +
 scripts/print_sequence.rb  |7 +
 scripts/reverse-complement.rb  |   19 +
 scripts/run-se-da.sh   |4 +-
 scripts/se-permutation.rb  |   45 +
 scripts/seeds2maxmatches.rb|   95 +
 scripts/sensitivity-test.rb|4 +-
 scripts/sim-read-mapping.sh|   60 +-
 scripts/single-read-mapping.sh |   30 +
 scripts/skmake.rb  |   15 +-
 scripts/travis_installdeps.sh  |   13 +
 scripts/{alloutputoptions.rb => turnwheel.rb}  |   23 +-
 src/annotationsketch/custom_track_gc_content.c |4 +-
 src/core/accspecialrange.gen   |   50 +
 src/core/alphabet.c|   25 +-
 src/core/arraydef.h|   41 +-
 src/core/bitbuffer.c   |  301 +-
 src/core/bitbuffer.h   |   70 +-
 src/core/bitpackstringsimpleop.h   |   11 +-
 src/core/colorspace.h  |6 +-
 src/core/csvline_reader.c  |  302 +
 src/core/csvline_reader.h  |   85 +
 src/core/encseq.c  |   90 +-
 src/core/encseq.h  |   19 +-
 src/core/fptr_api.h|2 +-
 src/core/gtdatapath.c  |   15 +-
 src/core/mail_address.h|2 +-
 src/core/radix_sort.c  |  241 +-
 src/core/radix_sort.h  |   11 +
 src/core/radixsort-ip-flba.inc |  364 +
 src/core/radixsort-ip-uint64keypair.inc|  211 +-
 src/core/radixsort-ip-ulong.inc|  203 +-
 src/core/radixsort-ip-ulongpair.inc|  203 +-
 src/core/str.c |7 +
 src/core/str.h |2 +
 src/core/timer.c   |   45 +-
 src/core/timer_api.h   |3 +
 src/core/unused_api.h  |6 +
 src/extended/alignment.c   |  164 +-
 src/extended/alignment.h   |   13 +-
 src/extended/assembly_stats_calculator.c   |   95 +-

[med-svn] [genometools] annotated tag upstream/1.5.10+ds created (now 7d1eb55)

2017-08-06 Thread Sascha Steinbiss 
This is an automated email from the git hooks/post-receive script.

satta pushed a change to annotated tag upstream/1.5.10+ds
in repository genometools.

at  7d1eb55   (tag)
   tagging  17a2684ec4cfc4b86555bbbe2a941f6b16f53e00 (commit)
  replaces  upstream/1.5.9+ds
 tagged by  Sascha Steinbiss
on  Sun Aug 6 15:45:45 2017 +0200

- Log -
Upstream version 1.5.10+ds

Sascha Steinbiss (1):
  New upstream version 1.5.10+ds

---

No new revisions were added by this update.

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[med-svn] [genometools] branch master updated (5276924 -> 80bbe17)

2017-08-06 Thread Sascha Steinbiss 
This is an automated email from the git hooks/post-receive script.

satta pushed a change to branch master
in repository genometools.

  from  5276924   use correct latex dependency
   new  17a2684   New upstream version 1.5.10+ds
   new  895438c   Merge tag 'upstream/1.5.10+ds'
   new  80bbe17   WIP: ner upstream

The 3 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 .travis.yml|   45 +-
 CHANGELOG  |   19 +-
 Makefile   |   15 +-
 VERSION|2 +-
 debian/changelog   |7 +
 debian/genometools-common.install  |   19 +-
 debian/patches/adding_soname   |4 +-
 debian/patches/libbam-fix  |6 +-
 debian/patches/reproducible|4 +-
 debian/patches/series  |2 -
 doc/RELEASE|4 -
 gtdata/modules/gtdoclib/docvisitorlatex.lua|   27 +-
 gtdata/modules/gtdoclib/gtscript_header.lp |1 -
 gtdata/modules/gtdoclib/libgenometools_header.lp   |1 -
 gtpython/README|2 +-
 scripts/SEmatch.rb |  151 +
 scripts/all-vs-all.sh  |6 +-
 scripts/alloutputoptions.rb|   44 +-
 scripts/build_dists.sh |8 +
 scripts/check-fstperquery.rb   |   55 +
 scripts/cleanpp.sh |1 +
 scripts/cmp_db_query_exch.rb   |4 +-
 scripts/collect-mappings.rb|   26 -
 scripts/convert2myersformat.rb |   77 +-
 scripts/cutsequences.rb|   61 +
 scripts/enumkmers.rb   |   26 +
 scripts/esq-in-bytes.sh|   25 +-
 scripts/estim-kmer-size.rb |   25 +
 scripts/evalue-filter.rb   |   29 +
 scripts/extract-seed.rb|   18 +
 scripts/fasta.rb   |  112 +
 scripts/findfasta.rb   |   28 +-
 scripts/gen-display-struct.rb  |  226 +
 scripts/gen-intsets.rb |   35 +-
 scripts/gen-radixsort-ip.rb|  466 +-
 scripts/gen-radixsort-ip.sh|1 +
 scripts/gfa2lint.rb|  148 +
 scripts/manyshort-somelong.rb  |   23 +
 scripts/matches-compare.rb |  396 +
 scripts/matches2ani.rb |   52 +
 scripts/mk_ft_longest_common.rb|  258 +
 scripts/print_sequence.rb  |7 +
 scripts/reverse-complement.rb  |   19 +
 scripts/run-se-da.sh   |4 +-
 scripts/se-permutation.rb  |   45 +
 scripts/seeds2maxmatches.rb|   95 +
 scripts/sensitivity-test.rb|4 +-
 scripts/sim-read-mapping.sh|   60 +-
 scripts/single-read-mapping.sh |   30 +
 scripts/skmake.rb  |   15 +-
 scripts/travis_installdeps.sh  |   13 +
 scripts/{alloutputoptions.rb => turnwheel.rb}  |   23 +-
 src/annotationsketch/custom_track_gc_content.c |4 +-
 src/core/accspecialrange.gen   |   50 +
 src/core/alphabet.c|   25 +-
 src/core/arraydef.h|   41 +-
 src/core/bitbuffer.c   |  301 +-
 src/core/bitbuffer.h   |   70 +-
 src/core/bitpackstringsimpleop.h   |   11 +-
 src/core/colorspace.h  |6 +-
 src/core/csvline_reader.c  |  302 +
 src/core/csvline_reader.h  |   85 +
 src/core/encseq.c  |   90 +-
 src/core/encseq.h  |   19 +-
 src/core/fptr_api.h|2 +-
 src/core/gtdatapath.c  |   15 +-
 src/core/mail_address.h|2 +-
 src/core/radix_sort.c  |  241 +-
 src/core/radix_sort.h  |   11 +
 src/core/radixsort-ip-flba.inc |  364 +
 src/core/radixsort-ip-uint64keypair.inc|  211 +-
 src/core/radixsort-ip-ulong.inc

[med-svn] [itksnap] branch master updated (51102a2 -> 65d701f)

2017-08-06 Thread Gert Wollny 
This is an automated email from the git hooks/post-receive script.

gewo pushed a change to branch master
in repository itksnap.

  from  51102a2   Add hardening flags
   new  65d701f   Re-upload to unstable

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 debian/changelog | 6 ++
 1 file changed, 6 insertions(+)

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[med-svn] [itksnap] 01/01: Re-upload to unstable

2017-08-06 Thread Gert Wollny 
This is an automated email from the git hooks/post-receive script.

gewo pushed a commit to branch master
in repository itksnap.

commit 65d701f92f5e3a9f66836c3421b040b6b7df3f92
Author: Gert Wollny 
Date:   Sun Aug 6 10:05:11 2017 +

Re-upload to unstable
---
 debian/changelog | 6 ++
 1 file changed, 6 insertions(+)

diff --git a/debian/changelog b/debian/changelog
index 3e19866..445cad0 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,9 @@
+itksnap (3.6.0-1) unstable; urgency=medium
+
+  * re-upload to unstable
+
+ -- Gert Wollny   Sun, 06 Aug 2017 10:04:41 +
+
 itksnap (3.6.0-1~exp1) experimental; urgency=medium
 
   * New upstream version 3.6.0

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[med-svn] [itksnap] annotated tag debian/3.6.0-1 created (now cd40847)

2017-08-06 Thread Gert Wollny 
This is an automated email from the git hooks/post-receive script.

gewo pushed a change to annotated tag debian/3.6.0-1
in repository itksnap.

at  cd40847   (tag)
   tagging  65d701f92f5e3a9f66836c3421b040b6b7df3f92 (commit)
  replaces  debian/3.6.0-1_exp1
 tagged by  Gert Wollny
on  Sun Aug 6 10:05:28 2017 +

- Log -
itksnap Debian release 3.6.0-1

Gert Wollny (1):
  Re-upload to unstable

---

No new revisions were added by this update.

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[med-svn] [gdcm] branch master updated (aff36b5 -> 1c6aa97)

2017-08-06 Thread Gert Wollny 
This is an automated email from the git hooks/post-receive script.

gewo pushed a change to branch master
in repository gdcm.

  from  aff36b5   Update copyright
   new  22a3eb8   d/rules: ignore csharp rules on archs that don't support 
it
   new  1c6aa97   Update changelog for release

The 2 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 debian/changelog | 6 ++
 debian/rules | 2 ++
 2 files changed, 8 insertions(+)

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[med-svn] [gdcm] 01/02: d/rules: ignore csharp rules on archs that don't support it

2017-08-06 Thread Gert Wollny 
This is an automated email from the git hooks/post-receive script.

gewo pushed a commit to branch master
in repository gdcm.

commit 22a3eb86c9737fe9077b4e4d07d8753f9f4d5e50
Author: Gert Wollny 
Date:   Sun Aug 6 08:36:47 2017 +

d/rules: ignore csharp rules on archs that don't support it
---
 debian/rules | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/debian/rules b/debian/rules
index d558b8a..4038709 100755
--- a/debian/rules
+++ b/debian/rules
@@ -121,8 +121,10 @@ override_dh_auto_install-arch:
mv debian/tmp/usr/lib/python debian/tmp/$(PYMODDIR)
#mv debian/tmp/usr/lib/_gdcmswig.so* 
debian/tmp/$(PYMODDIR)/dist-packages/
 
+ifeq ($(DEB_WRAP_CSHARP), 1)   
#Csharp correct file name (Why did it change from 2.8.0 to 2.8.2?) 
mv debian/tmp/usr/lib/$(DEB_HOST_MULTIARCH)/gdcmsharpglue.so 
debian/tmp/usr/lib/$(DEB_HOST_MULTIARCH)/libgdcmsharpglue.so
+endif
 
 override_dh_auto_install-indep: 
DESTDIR=$(CURDIR)/debian/tmp/ $(MAKE) -C obj-*/Utilities/doxygen/ 
install 

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[med-svn] [gdcm] annotated tag debian/2.8.2-2 created (now 7021896)

2017-08-06 Thread Gert Wollny 
This is an automated email from the git hooks/post-receive script.

gewo pushed a change to annotated tag debian/2.8.2-2
in repository gdcm.

at  7021896   (tag)
   tagging  1c6aa97ae7148152c60744524d1362bbab89cbfe (commit)
  replaces  debian/2.8.2-1
 tagged by  Gert Wollny
on  Sun Aug 6 08:57:01 2017 +

- Log -
gdcm Debian release 2.8.2-2

Gert Wollny (2):
  d/rules: ignore csharp rules on archs that don't support it
  Update changelog for release

---

No new revisions were added by this update.

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[med-svn] [gdcm] 02/02: Update changelog for release

2017-08-06 Thread Gert Wollny 
This is an automated email from the git hooks/post-receive script.

gewo pushed a commit to branch master
in repository gdcm.

commit 1c6aa97ae7148152c60744524d1362bbab89cbfe
Author: Gert Wollny 
Date:   Sun Aug 6 08:37:20 2017 +

Update changelog for release
---
 debian/changelog | 6 ++
 1 file changed, 6 insertions(+)

diff --git a/debian/changelog b/debian/changelog
index 3028458..5939bbb 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,9 @@
+gdcm (2.8.2-2) unstable; urgency=medium
+
+  * d/rules: ignore csharp rules on archs that don't support it
+
+ -- Gert Wollny   Sun, 06 Aug 2017 08:36:59 +
+
 gdcm (2.8.2-1) unstable; urgency=medium
 
   * New upstream version 2.8.2

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