[med-svn] [Git][med-team/community/helper-scripts][master] automatic update

2024-04-02 Thread Andreas Tille (@tille)


Andreas Tille pushed to branch master at Debian Med / community / helper-scripts


Commits:
759f0ce2 by Andreas Tille at 2024-04-03T01:43:35+00:00
automatic update

- - - - -


4 changed files:

- debian-med-tests.txt
- debian-science-tests.txt
- outdated_med-packages.txt
- python-team-tests.txt


Changes:

=
debian-med-tests.txt
=
@@ -1,4 +1,4 @@
-Last-Update: Tue, 02 Apr 2024 13:42:04 +
+Last-Update: Wed, 03 Apr 2024 01:42:04 +
 
  Source| Vote   | Tasks
  | Tags 
 
---+++--


=
debian-science-tests.txt
=
@@ -1,4 +1,4 @@
-Last-Update: Tue, 02 Apr 2024 13:42:08 +
+Last-Update: Wed, 03 Apr 2024 01:42:04 +
 
Source  | Vote   | Tasks
   |  Tags  
 
 
---++-+-


=
outdated_med-packages.txt
=
The diff for this file was not included because it is too large.

=
python-team-tests.txt
=
@@ -1,4 +1,4 @@
-Last-Update: Tue, 02 Apr 2024 13:42:12 +
+Last-Update: Wed, 03 Apr 2024 01:42:04 +
 
  Source | Vote   |  
Tags  
 
++



View it on GitLab: 
https://salsa.debian.org/med-team/community/helper-scripts/-/commit/759f0ce2137902ad0370a078841ce88d0900501f

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[med-svn] [Git][med-team/kalign][pristine-tar] pristine-tar data for kalign_3.4.0.orig.tar.gz

2024-04-02 Thread Michael R. Crusoe (@crusoe)


Michael R. Crusoe pushed to branch pristine-tar at Debian Med / kalign


Commits:
8e107eba by Michael R. Crusoe at 2024-04-02T13:25:07+02:00
pristine-tar data for kalign_3.4.0.orig.tar.gz

- - - - -


2 changed files:

- + kalign_3.4.0.orig.tar.gz.delta
- + kalign_3.4.0.orig.tar.gz.id


Changes:

=
kalign_3.4.0.orig.tar.gz.delta
=
Binary files /dev/null and b/kalign_3.4.0.orig.tar.gz.delta differ


=
kalign_3.4.0.orig.tar.gz.id
=
@@ -0,0 +1 @@
+b8aeb3f3e58da81996e5e8e31e7c148f7c7d9a15



View it on GitLab: 
https://salsa.debian.org/med-team/kalign/-/commit/8e107eba5e3f7b54b4f89a65810ab6775731c434

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[med-svn] [Git][med-team/kalign][upstream] New upstream version 3.4.0

2024-04-02 Thread Michael R. Crusoe (@crusoe)


Michael R. Crusoe pushed to branch upstream at Debian Med / kalign


Commits:
0da8b281 by Michael R. Crusoe at 2024-04-02T13:25:05+02:00
New upstream version 3.4.0
- - - - -


30 changed files:

- .gitignore
- CMakeLists.txt
- ChangeLog
- lib/CMakeLists.txt
- lib/src/aln_controller.c
- lib/src/aln_run.c
- lib/src/aln_seqseq.c
- lib/src/aln_struct.h
- lib/src/aln_wrap.c
- lib/src/bisectingKmeans.c
- lib/src/bisectingKmeans.h
- lib/src/bpm.c
- lib/src/bpm.h
- lib/src/bpm_test.c
- + lib/src/core.h
- + lib/src/coretralign.c
- + lib/src/coretralign.h
- lib/src/msa_alloc.c
- lib/src/msa_alloc.h
- lib/src/msa_check.c
- lib/src/msa_io.c
- lib/src/msa_op.c
- lib/src/msa_op.h
- + lib/src/msa_sort.c
- + lib/src/msa_sort.h
- lib/src/msa_struct.h
- lib/src/sequence_distance.c
- src/CMakeLists.txt
- src/run_kalign.c
- tests/CMakeLists.txt


The diff was not included because it is too large.


View it on GitLab: 
https://salsa.debian.org/med-team/kalign/-/commit/0da8b281784f1941e370f8f80109a70bfeb6800f

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[med-svn] [Git][med-team/kalign] Pushed new tag upstream/3.4.0

2024-04-02 Thread Michael R. Crusoe (@crusoe)


Michael R. Crusoe pushed new tag upstream/3.4.0 at Debian Med / kalign

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https://salsa.debian.org/med-team/kalign/-/tree/upstream/3.4.0
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[med-svn] [Git][med-team/kalign][master] 6 commits: routine-update: New upstream version

2024-04-02 Thread Michael R. Crusoe (@crusoe)


Michael R. Crusoe pushed to branch master at Debian Med / kalign


Commits:
3a3c9ce2 by Michael R. Crusoe at 2024-04-02T13:25:04+02:00
routine-update: New upstream version

- - - - -
0da8b281 by Michael R. Crusoe at 2024-04-02T13:25:05+02:00
New upstream version 3.4.0
- - - - -
8df81634 by Michael R. Crusoe at 2024-04-02T13:25:07+02:00
Update upstream source from tag upstream/3.4.0

Update to upstream version 3.4.0
with Debian dir 1a93845bf26cb2b3e7976e7fc978e33059d0df8d
- - - - -
a5252768 by Michael R. Crusoe at 2024-04-02T13:48:32+02:00
d/patches: disable pass-proper-flags.patch for now.

- - - - -
14b0bf1d by Michael R. Crusoe at 2024-04-02T13:49:01+02:00
fix epoch

- - - - -
8b8bb89b by Michael R. Crusoe at 2024-04-02T13:49:50+02:00
routine-update: Ready to upload to unstable

- - - - -


30 changed files:

- .gitignore
- CMakeLists.txt
- ChangeLog
- debian/changelog
- debian/patches/series
- lib/CMakeLists.txt
- lib/src/aln_controller.c
- lib/src/aln_run.c
- lib/src/aln_seqseq.c
- lib/src/aln_struct.h
- lib/src/aln_wrap.c
- lib/src/bisectingKmeans.c
- lib/src/bisectingKmeans.h
- lib/src/bpm.c
- lib/src/bpm.h
- lib/src/bpm_test.c
- + lib/src/core.h
- + lib/src/coretralign.c
- + lib/src/coretralign.h
- lib/src/msa_alloc.c
- lib/src/msa_alloc.h
- lib/src/msa_check.c
- lib/src/msa_io.c
- lib/src/msa_op.c
- lib/src/msa_op.h
- + lib/src/msa_sort.c
- + lib/src/msa_sort.h
- lib/src/msa_struct.h
- lib/src/sequence_distance.c
- src/CMakeLists.txt


The diff was not included because it is too large.


View it on GitLab: 
https://salsa.debian.org/med-team/kalign/-/compare/d2158e67f7768960abdbcdc6f4abf9d7e0e33d4f...8b8bb89b976a9c7011570a1149fce3b6f22aef86

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View it on GitLab: 
https://salsa.debian.org/med-team/kalign/-/compare/d2158e67f7768960abdbcdc6f4abf9d7e0e33d4f...8b8bb89b976a9c7011570a1149fce3b6f22aef86
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[med-svn] [Git][med-team/kalign] Pushed new tag debian/1%3.4.0-1

2024-04-02 Thread Michael R. Crusoe (@crusoe)


Michael R. Crusoe pushed new tag debian/1%3.4.0-1 at Debian Med / kalign

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[med-svn] [Git][med-team/aragorn] Pushed new tag debian/1.2.41-3

2024-04-02 Thread Sascha Steinbiss (@satta)


Sascha Steinbiss pushed new tag debian/1.2.41-3 at Debian Med / aragorn

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[med-svn] [Git][med-team/aragorn][master] 2 commits: update watchfile

2024-04-02 Thread Sascha Steinbiss (@satta)


Sascha Steinbiss pushed to branch master at Debian Med / aragorn


Commits:
4b2f95ce by Sascha Steinbiss at 2024-04-02T11:14:05+02:00
update watchfile

- - - - -
6c9f2f1f by Sascha Steinbiss at 2024-04-02T11:16:56+02:00
update watchfile to point to working directory again

- - - - -


2 changed files:

- debian/changelog
- debian/watch


Changes:

=
debian/changelog
=
@@ -1,3 +1,9 @@
+aragorn (1.2.41-3) unstable; urgency=medium
+
+  * Update watchfile to point to working directory again.
+
+ -- Sascha Steinbiss   Tue, 02 Apr 2024 11:14:39 +0200
+
 aragorn (1.2.41-2) unstable; urgency=medium
 
   * Ensure multiple builds can be done in same directory.


=
debian/watch
=
@@ -1,2 +1,2 @@
 version=4
-https://www.ansikte.se/ARAGORN/Downloads/aragorn(.*).c
+https://www.trna.se/ARAGORN/Downloads/aragorn(.*).c



View it on GitLab: 
https://salsa.debian.org/med-team/aragorn/-/compare/e3ffa7a620cf3625283bec52678555d9689154ab...6c9f2f1f94d39f89b8e9c14b2dcd196d80e66b2d

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https://salsa.debian.org/med-team/aragorn/-/compare/e3ffa7a620cf3625283bec52678555d9689154ab...6c9f2f1f94d39f89b8e9c14b2dcd196d80e66b2d
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