[med-svn] [Git][med-team/cwltool][upstream] 3 commits: New upstream version 1.0.20180923172926

Michael R. Crusoe pushed to branch upstream at Debian Med / cwltool Commits: 6bd1e0df by Michael R. Crusoe at 2018-10-03T11:40:24Z New upstream version 1.0.20180923172926 - - - - - 62074824 by Michael R. Crusoe at 2018-12-07T06:35:37Z New upstream version 1.0.20181201184214 - - - - - 8b0ef4b2

[med-svn] [Git][med-team/cwltool][master] 17 commits: New upstream version 1.0.20180923172926

Michael R. Crusoe pushed to branch master at Debian Med / cwltool Commits: 6bd1e0df by Michael R. Crusoe at 2018-10-03T11:40:24Z New upstream version 1.0.20180923172926 - - - - - 62074824 by Michael R. Crusoe at 2018-12-07T06:35:37Z New upstream version 1.0.20181201184214 - - - - - cf2f962b

[med-svn] [Git][med-team/cwltool] Deleted branch py3

Michael R. Crusoe deleted branch py3 at Debian Med / cwltool -- You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net/cgi

[med-svn] [Git][med-team/htslib] Pushed new tag debian/1.9-6

Michael R. Crusoe pushed new tag debian/1.9-6 at Debian Med / htslib -- View it on GitLab: https://salsa.debian.org/med-team/htslib/tree/debian/1.9-6 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing

[med-svn] [Git][med-team/htslib][master] Partial Revert "Add libdeflate for DEFLATE based (de)compression and its crc32 implementation."

Michael R. Crusoe pushed to branch master at Debian Med / htslib Commits: 147dd806 by Michael R. Crusoe at 2018-12-06T06:59:28Z Partial Revert Add libdeflate for DEFLATE based (de)compression and its crc32 implementation. This reverts commit bc33ca5af9a047ad3e27022953cccedbfcd912ef

[med-svn] [Git][med-team/htslib] Pushed new tag debian/1.9-5

Michael R. Crusoe pushed new tag debian/1.9-5 at Debian Med / htslib -- View it on GitLab: https://salsa.debian.org/med-team/htslib/tree/debian/1.9-5 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing

[med-svn] [Git][med-team/spdlog][pristine-tar] pristine-tar data for spdlog_1.2.1.orig.tar.gz

Michael R. Crusoe pushed to branch pristine-tar at Debian Med / spdlog Commits: 2e34ca1f by Michael R. Crusoe at 2018-11-29T07:54:25Z pristine-tar data for spdlog_1.2.1.orig.tar.gz - - - - - 2 changed files: - + spdlog_1.2.1.orig.tar.gz.delta - + spdlog_1.2.1.orig.tar.gz.id Changes

[med-svn] [Git][med-team/spdlog] Pushed new tag upstream/1.2.1

Michael R. Crusoe pushed new tag upstream/1.2.1 at Debian Med / spdlog -- View it on GitLab: https://salsa.debian.org/med-team/spdlog/tree/upstream/1.2.1 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit

[med-svn] [Git][med-team/htslib][master] 2 commits: Add libdeflate for DEFLATE based (de)compression and its crc32 implementation.

Michael R. Crusoe pushed to branch master at Debian Med / htslib Commits: bc33ca5a by Michael R. Crusoe at 2018-12-05T04:46:14Z Add libdeflate for DEFLATE based (de)compression and its crc32 implementation. - - - - - 81e1ecba by Michael R. Crusoe at 2018-12-05T04:56:22Z Re-add mipsel to tabix

[med-svn] [Git][med-team/spades] Pushed new tag debian/3.13.0+dfsg-2_0jemalloc5

Michael R. Crusoe pushed new tag debian/3.13.0+dfsg-2_0jemalloc5 at Debian Med / spades -- View it on GitLab: https://salsa.debian.org/med-team/spades/tree/debian/3.13.0+dfsg-2_0jemalloc5 You're receiving this email because of your account on salsa.debian.org

[med-svn] [Git][med-team/spades] Pushed new branch experimental

Michael R. Crusoe pushed new branch experimental at Debian Med / spades -- View it on GitLab: https://salsa.debian.org/med-team/spades/tree/experimental You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit

[med-svn] [Git][med-team/spades] Deleted branch experimental

Michael R. Crusoe deleted branch experimental at Debian Med / spades -- You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth

[med-svn] [Git][med-team/gbwt][master] 3 commits: skip tests for now

Michael R. Crusoe pushed to branch master at Debian Med / gbwt Commits: aeea3452 by Michael R. Crusoe at 2018-12-14T07:37:14Z skip tests for now - - - - - 51f3fca4 by Michael R. Crusoe at 2018-12-14T07:40:59Z install the static library - - - - - 7a13f094 by Michael R. Crusoe at 2019-01-10T15

[med-svn] [Git][med-team/toil][master] document that toil in Debian is Py3 only

Michael R. Crusoe pushed to branch master at Debian Med / toil Commits: 397f6a52 by Michael R. Crusoe at 2019-01-07T12:59:51Z document that toil in Debian is Py3 only - - - - - 1 changed file: - debian/changelog Changes: = debian/changelog

[med-svn] [Git][med-team/toil][master] 13 commits: skip galaxy-lib, not yet packaged for Debian

Michael R. Crusoe pushed to branch master at Debian Med / toil Commits: ee60b837 by Michael R. Crusoe at 2019-01-07T10:04:13Z skip galaxy-lib, not yet packaged for Debian - - - - - 6302fee8 by Michael R. Crusoe at 2019-01-07T10:31:40Z fix doc build - - - - - 1f2f49b3 by Michael R. Crusoe

[med-svn] [Git][med-team/toil] Pushed new tag upstream/3.18.0

Michael R. Crusoe pushed new tag upstream/3.18.0 at Debian Med / toil -- View it on GitLab: https://salsa.debian.org/med-team/toil/tree/upstream/3.18.0 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit

[med-svn] [Git][med-team/toil][pristine-tar] pristine-tar data for toil_3.18.0.orig.tar.gz

Michael R. Crusoe pushed to branch pristine-tar at Debian Med / toil Commits: ef7c43dc by Michael R. Crusoe at 2019-01-07T10:55:03Z pristine-tar data for toil_3.18.0.orig.tar.gz - - - - - 2 changed files: - + toil_3.18.0.orig.tar.gz.delta - + toil_3.18.0.orig.tar.gz.id Changes

[med-svn] [Git][med-team/toil][upstream] New upstream version 3.18.0

Michael R. Crusoe pushed to branch upstream at Debian Med / toil Commits: 46d02fb7 by Michael R. Crusoe at 2019-01-07T10:54:53Z New upstream version 3.18.0 - - - - - 30 changed files: - .gitignore - Makefile - README.rst - attic/toil-sort-example.py - docs/appendices/environment_vars.rst

[med-svn] [Git][med-team/toil][master] 2 commits: debhelper 11

Michael R. Crusoe pushed to branch master at Debian Med / toil Commits: 07057d81 by Michael R. Crusoe at 2019-01-07T13:02:51Z debhelper 11 - - - - - c342c91f by Michael R. Crusoe at 2019-01-07T13:04:21Z Standards-Version: 4.3.0 (no changes needed). - - - - - 3 changed files: - debian

[med-svn] [Git][med-team/khmer] Pushed new tag debian/2.1.2+dfsg-5

Michael R. Crusoe pushed new tag debian/2.1.2+dfsg-5 at Debian Med / khmer -- View it on GitLab: https://salsa.debian.org/med-team/khmer/tree/debian/2.1.2+dfsg-5 You're receiving this email because of your account on salsa.debian.org. ___ debian-med

[med-svn] [Git][med-team/trinityrnaseq] Pushed new tag debian/2.6.6+dfsg-6

Michael R. Crusoe pushed new tag debian/2.6.6+dfsg-6 at Debian Med / trinityrnaseq -- View it on GitLab: https://salsa.debian.org/med-team/trinityrnaseq/tree/debian/2.6.6+dfsg-6 You're receiving this email because of your account on salsa.debian.org

[med-svn] [Git][med-team/python-schema-salad][master] Fix the already shipped tests and enable them as autopkgtests.

Michael R. Crusoe pushed to branch master at Debian Med / python-schema-salad Commits: 71279ade by Michael R. Crusoe at 2019-01-04T14:45:42Z Fix the already shipped tests and enable them as autopkgtests. - - - - - 6 changed files: - debian/changelog - debian/control - debian/patches/exec_cwl

[med-svn] [Git][med-team/python-schema-salad][master] patch sent upstream (to me)

Michael R. Crusoe pushed to branch master at Debian Med / python-schema-salad Commits: 7828f97f by Michael R. Crusoe at 2019-01-04T15:19:15Z patch sent upstream (to me) - - - - - 1 changed file: - debian/patches/exec_cwl Changes: = debian/patches

[med-svn] [Git][med-team/rapmap][master] Upload to unstable.

Michael R. Crusoe pushed to branch master at Debian Med / rapmap Commits: cb8fbe48 by Michael R. Crusoe at 2019-01-02T11:07:16Z Upload to unstable. - - - - - 1 changed file: - debian/changelog Changes: = debian/changelog

[med-svn] [Git][med-team/rapmap] Pushed new tag debian/0.12.0+dfsg-3

Michael R. Crusoe pushed new tag debian/0.12.0+dfsg-3 at Debian Med / rapmap -- View it on GitLab: https://salsa.debian.org/med-team/rapmap/tree/debian/0.12.0+dfsg-3 You're receiving this email because of your account on salsa.debian.org. ___ debian

[med-svn] [Git][med-team/staden-io-lib][master] Upload to unstable.

Michael R. Crusoe pushed to branch master at Debian Med / staden-io-lib Commits: 89bb5ae9 by Michael R. Crusoe at 2019-01-02T11:09:04Z Upload to unstable. - - - - - 1 changed file: - debian/changelog Changes: = debian/changelog

[med-svn] [Git][med-team/staden-io-lib] Pushed new tag debian/1.14.11-6

Michael R. Crusoe pushed new tag debian/1.14.11-6 at Debian Med / staden-io-lib -- View it on GitLab: https://salsa.debian.org/med-team/staden-io-lib/tree/debian/1.14.11-6 You're receiving this email because of your account on salsa.debian.org

[med-svn] [Git][med-team/seqan2][master] Fix thread wait assembly for IA64.

Michael R. Crusoe pushed to branch master at Debian Med / seqan2 Commits: aebeb222 by Michael R. Crusoe at 2019-01-02T12:28:56Z Fix thread wait assembly for IA64. - - - - - 3 changed files: - debian/changelog - + debian/patches/ia64_yield - debian/patches/series Changes

[med-svn] [Git][med-team/hhsuite][master] update upstream URL

Michael R. Crusoe pushed to branch master at Debian Med / hhsuite Commits: 7023c65c by Michael R. Crusoe at 2019-01-04T17:20:21Z update upstream URL - - - - - 1 changed file: - debian/control Changes: = debian/control

[med-svn] [Git][med-team/libthread-pool][master] 2 commits: add missing pthread

Michael R. Crusoe pushed to branch master at Debian Med / libthread-pool Commits: 964266ed by Michael R. Crusoe at 2019-01-04T17:44:33Z add missing pthread - - - - - 3c785962 by Michael R. Crusoe at 2019-01-04T17:44:46Z Remove trailing whitespace in debian/copyright - - - - - 4 changed files

[med-svn] [Git][med-team/libbpp-phyl][master] libbpp-phyl-dev: Multi-Arch: same

Michael R. Crusoe pushed to branch master at Debian Med / libbpp-phyl Commits: 52aa77b4 by Michael R. Crusoe at 2019-01-04T18:36:07Z libbpp-phyl-dev: Multi-Arch: same Remove trailing whitespace in debian/copyright add missing ${devlibs:Depends} - - - - - 3 changed files: - debian/changelog

[med-svn] [Git][med-team/libpsortb][master] 2 commits: Upload to unstable

Michael R. Crusoe pushed to branch master at Debian Med / libpsortb Commits: ed2c60db by Michael R. Crusoe at 2019-01-04T18:45:04Z Upload to unstable - - - - - b60043bb by Michael R. Crusoe at 2019-01-04T19:18:56Z put -lsvm in the correct location Broken until https://bugs.debian.org/cgi-bin

[med-svn] [Git][med-team/spdlog][master] 5 commits: New upstream version 1.3.0

Michael R. Crusoe pushed to branch master at Debian Med / spdlog Commits: 813e61d2 by Michael R. Crusoe at 2019-01-12T13:33:36Z New upstream version 1.3.0 - - - - - 36a5de47 by Michael R. Crusoe at 2019-01-12T13:33:37Z Update upstream source from tag upstream/1.3.0 Update to upstream version

[med-svn] [Git][med-team/spdlog][upstream] New upstream version 1.3.0

Michael R. Crusoe pushed to branch upstream at Debian Med / spdlog Commits: 813e61d2 by Michael R. Crusoe at 2019-01-12T13:33:36Z New upstream version 1.3.0 - - - - - 30 changed files: - .clang-format - .travis.yml - CMakeLists.txt - README.md - appveyor.yml - bench/CMakeLists.txt - bench

[med-svn] [Git][med-team/spdlog] Pushed new tag upstream/1.3.0

Michael R. Crusoe pushed new tag upstream/1.3.0 at Debian Med / spdlog -- View it on GitLab: https://salsa.debian.org/med-team/spdlog/tree/upstream/1.3.0 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit

[med-svn] [Git][med-team/spdlog] Pushed new tag debian/1.3.0-1

Michael R. Crusoe pushed new tag debian/1.3.0-1 at Debian Med / spdlog -- View it on GitLab: https://salsa.debian.org/med-team/spdlog/tree/debian/1.3.0-1 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit

[med-svn] [Git][med-team/spdlog][pristine-tar] pristine-tar data for spdlog_1.3.0.orig.tar.gz

Michael R. Crusoe pushed to branch pristine-tar at Debian Med / spdlog Commits: f62f6c0a by Michael R. Crusoe at 2019-01-12T13:33:37Z pristine-tar data for spdlog_1.3.0.orig.tar.gz - - - - - 2 changed files: - + spdlog_1.3.0.orig.tar.gz.delta - + spdlog_1.3.0.orig.tar.gz.id Changes

[med-svn] [Git][med-team/spdlog][master] No point in building benchmarks

Michael R. Crusoe pushed to branch master at Debian Med / spdlog Commits: 556000e4 by Michael R. Crusoe at 2019-01-12T17:59:30Z No point in building benchmarks It causes issues on some unofficial archs. - - - - - 4 changed files: - debian/changelog - debian/control - + debian/lintian

[med-svn] [Git][med-team/spdlog] Pushed new tag debian/1.3.0-2

Michael R. Crusoe pushed new tag debian/1.3.0-2 at Debian Med / spdlog -- View it on GitLab: https://salsa.debian.org/med-team/spdlog/tree/debian/1.3.0-2 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit

[med-svn] [Git][med-team/toil] Deleted tag debian/3.18.0-2

Michael R. Crusoe deleted tag debian/3.18.0-2 at Debian Med / toil -- You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing list debian-med-com...@alioth-lists.debian.net https://alioth-lists.debian.net

[med-svn] [Git][med-team/toil] Pushed new tag debian/3.18.0-2

Michael R. Crusoe pushed new tag debian/3.18.0-2 at Debian Med / toil -- View it on GitLab: https://salsa.debian.org/med-team/toil/tree/debian/3.18.0-2 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit

[med-svn] [Git][med-team/toil][master] 2 commits: add/update debian/{TODO, README.source, README.debian}

Michael R. Crusoe pushed to branch master at Debian Med / toil Commits: b1230168 by Michael R. Crusoe at 2019-01-14T08:04:55Z add/update debian/{TODO,README.source,README.debian} - - - - - 1b603096 by Michael R. Crusoe at 2019-01-14T08:04:55Z man: symlink _toil_worker to toil - - - - - 6

[med-svn] [Git][med-team/toil][master] 4 commits: remove recommend on "python3-futures"

Michael R. Crusoe pushed to branch master at Debian Med / toil Commits: 1eb0fb2b by Michael R. Crusoe at 2019-01-14T07:24:15Z remove recommend on python3-futures and depends on pytest* - - - - - 76d73969 by Michael R. Crusoe at 2019-01-14T07:24:40Z Refined the package description, added

[med-svn] [Git][med-team/toil] Pushed new tag debian/3.18.0-2

Michael R. Crusoe pushed new tag debian/3.18.0-2 at Debian Med / toil -- View it on GitLab: https://salsa.debian.org/med-team/toil/tree/debian/3.18.0-2 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit

[med-svn] [Git][med-team/toil] Pushed new tag debian/3.18.0-1

Michael R. Crusoe pushed new tag debian/3.18.0-1 at Debian Med / toil -- View it on GitLab: https://salsa.debian.org/med-team/toil/tree/debian/3.18.0-1 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit

[med-svn] [Git][med-team/community/helper-scripts][master] allow running on existing repos that weren't fully setup

Michael R. Crusoe pushed to branch master at Debian Med / community / helper-scripts Commits: 85d1b05d by Michael R. Crusoe at 2019-01-14T09:34:25Z allow running on existing repos that werent fully setup - - - - - 1 changed file: - inject-into-salsa-git Changes

[med-svn] [Git][med-team/toil][master] basic smoke test

Michael R. Crusoe pushed to branch master at Debian Med / toil Commits: 9e206f96 by Michael R. Crusoe at 2019-01-14T09:59:43Z basic smoke test - - - - - 3 changed files: - debian/changelog - + debian/tests/control - + debian/tests/smoke-test Changes

[med-svn] [Git][med-team/cwltool][master] testing with Docker doesn't work; add curl

Michael R. Crusoe pushed to branch master at Debian Med / cwltool Commits: ea9cdf62 by Michael R. Crusoe at 2018-12-31T06:48:12Z testing with Docker doesnt work; add curl - - - - - 2 changed files: - debian/changelog - debian/tests/control Changes

[med-svn] [Git][med-team/cwltool] Pushed new tag debian/1.0.20181217162649+dfsg-6

Michael R. Crusoe pushed new tag debian/1.0.20181217162649+dfsg-6 at Debian Med / cwltool -- View it on GitLab: https://salsa.debian.org/med-team/cwltool/tree/debian/1.0.20181217162649+dfsg-6 You're receiving this email because of your account on salsa.debian.org

[med-svn] [Git][med-team/khmer] Pushed new tag debian/2.1.2+dfsg-6

Michael R. Crusoe pushed new tag debian/2.1.2+dfsg-6 at Debian Med / khmer -- View it on GitLab: https://salsa.debian.org/med-team/khmer/tree/debian/2.1.2+dfsg-6 You're receiving this email because of your account on salsa.debian.org. ___ debian-med

[med-svn] [Git][med-team/khmer][master] Fix building arch-independent packages separately.

Michael R. Crusoe pushed to branch master at Debian Med / khmer Commits: 88f5bd72 by Michael R. Crusoe at 2019-01-09T15:27:54Z Fix building arch-independent packages separately. - - - - - 3 changed files: - debian/changelog - debian/control - debian/rules Changes

[med-svn] [Git][med-team/mypy][upstream] New upstream version 0.620

Michael R. Crusoe pushed to branch upstream at Debian Med / mypy Commits: 09c25437 by Michael R. Crusoe at 2018-08-07T17:58:48Z New upstream version 0.620 - - - - - 19 changed files: - MANIFEST.in - PKG-INFO - README.md - docs/source/additional_features.rst - docs/source/cheat_sheet_py3.rst

[med-svn] [Git][med-team/mypy] Pushed new tag upstream/0.620

Michael R. Crusoe pushed new tag upstream/0.620 at Debian Med / mypy -- View it on GitLab: https://salsa.debian.org/med-team/mypy/tree/upstream/0.620 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing

[med-svn] [Git][med-team/mypy][master] 3 commits: New upstream version 0.620

Michael R. Crusoe pushed to branch master at Debian Med / mypy Commits: 09c25437 by Michael R. Crusoe at 2018-08-07T17:58:48Z New upstream version 0.620 - - - - - 0508a171 by Michael R. Crusoe at 2018-08-07T17:58:58Z Update upstream source from tag upstream/0.620 Update to upstream version

[med-svn] [Git][med-team/mypy][pristine-tar] pristine-tar data for mypy_0.620.orig.tar.gz

Michael R. Crusoe pushed to branch pristine-tar at Debian Med / mypy Commits: 0369bc2b by Michael R. Crusoe at 2018-08-07T17:58:58Z pristine-tar data for mypy_0.620.orig.tar.gz - - - - - 2 changed files: - + mypy_0.620.orig.tar.gz.delta - + mypy_0.620.orig.tar.gz.id Changes

[med-svn] [Git][med-team/mypy] Pushed new tag debian/0.620-1

Michael R. Crusoe pushed new tag debian/0.620-1 at Debian Med / mypy -- View it on GitLab: https://salsa.debian.org/med-team/mypy/tree/debian/0.620-1 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing

[med-svn] [Git][med-team/mypy][pristine-tar] pristine-tar data for mypy_0.630.orig.tar.gz

Michael R. Crusoe pushed to branch pristine-tar at Debian Med / mypy Commits: 1be18588 by Michael R. Crusoe at 2018-09-17T16:32:52Z pristine-tar data for mypy_0.630.orig.tar.gz - - - - - 2 changed files: - + mypy_0.630.orig.tar.gz.delta - + mypy_0.630.orig.tar.gz.id Changes

[med-svn] [Git][med-team/mypy][upstream] New upstream version 0.630

Michael R. Crusoe pushed to branch upstream at Debian Med / mypy Commits: d0b03406 by Michael R. Crusoe at 2018-09-17T16:32:30Z New upstream version 0.630 - - - - - 30 changed files: - MANIFEST.in - PKG-INFO - + docs/.DS_Store - + docs/build/.DS_Store - + docs/build/doctrees

[med-svn] [Git][med-team/mypy][master] 3 commits: New upstream version 0.630

Michael R. Crusoe pushed to branch master at Debian Med / mypy Commits: d0b03406 by Michael R. Crusoe at 2018-09-17T16:32:30Z New upstream version 0.630 - - - - - 8109b8cc by Michael R. Crusoe at 2018-09-17T16:32:52Z Update upstream source from tag upstream/0.630 Update to upstream version

[med-svn] [Git][med-team/mypy] Pushed new tag upstream/0.630

Michael R. Crusoe pushed new tag upstream/0.630 at Debian Med / mypy -- View it on GitLab: https://salsa.debian.org/med-team/mypy/tree/upstream/0.630 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing

[med-svn] [Git][med-team/mypy] Pushed new tag debian/0.630-1

Michael R. Crusoe pushed new tag debian/0.630-1 at Debian Med / mypy -- View it on GitLab: https://salsa.debian.org/med-team/mypy/tree/debian/0.630-1 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing

[med-svn] [Git][med-team/community/package_template][master] skip preleases on GitHub

Michael R. Crusoe pushed to branch master at Debian Med / community / package_template Commits: 31394ee9 by Michael R. Crusoe at 2018-12-19T09:50:19Z skip preleases on GitHub - - - - - 1 changed file: - debian/watch Changes: = debian/watch

[med-svn] [Git][med-team/htslib][master] 3 commits: Try dropping to gcc-7 on i386*

Michael R. Crusoe pushed to branch master at Debian Med / htslib Commits: 103be525 by Michael R. Crusoe at 2018-12-11T02:13:22Z Try dropping to gcc-7 on i386* - - - - - c6579182 by Michael R. Crusoe at 2018-12-18T08:38:50Z try suggestion from https://github.com/samtools/htslib/issues/565

[med-svn] [Git][med-team/htslib] Pushed new tag debian/1.9-7

Michael R. Crusoe pushed new tag debian/1.9-7 at Debian Med / htslib -- View it on GitLab: https://salsa.debian.org/med-team/htslib/tree/debian/1.9-7 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing

[med-svn] [Git][med-team/mypy][master] Upload to unstable

Michael R. Crusoe pushed to branch master at Debian Med / mypy Commits: 63bce9c8 by Andreas Tille at 2019-01-24T23:05:31Z Upload to unstable - - - - - 2 changed files: - debian/changelog - debian/tests/control Changes: = debian/changelog

[med-svn] [Git][med-team/mypy] Pushed new tag debian/0.660-4

Michael R. Crusoe pushed new tag debian/0.660-4 at Debian Med / mypy -- View it on GitLab: https://salsa.debian.org/med-team/mypy/tree/debian/0.660-4 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing

[med-svn] [Git][med-team/toil][master] Make the build reproducible

Michael R. Crusoe pushed to branch master at Debian Med / toil Commits: 79a1d34d by Michael R. Crusoe at 2019-03-21T02:48:15Z Make the build reproducible - - - - - 3 changed files: - debian/changelog - + debian/patches/reproducible-build.patch - debian/patches/series Changes

[med-svn] [Git][med-team/hhsuite][master] 7 commits: Upstream no longer includes the PDF in their tarball

Michael R. Crusoe pushed to branch master at Debian Med / hhsuite Commits: 4568edbb by Michael R. Crusoe at 2019-02-28T14:15:23Z Upstream no longer includes the PDF in their tarball - - - - - bc1068e5 by Michael R. Crusoe at 2019-02-28T14:16:20Z New upstream version 3.1.0 - - - - - 154c0b4d

[med-svn] [Git][med-team/hhsuite][pristine-tar] pristine-tar data for hhsuite_3.1.0.orig.tar.xz

Michael R. Crusoe pushed to branch pristine-tar at Debian Med / hhsuite Commits: c303f278 by Michael R. Crusoe at 2019-02-28T14:16:34Z pristine-tar data for hhsuite_3.1.0.orig.tar.xz - - - - - 2 changed files: - + hhsuite_3.1.0.orig.tar.xz.delta - + hhsuite_3.1.0.orig.tar.xz.id Changes

[med-svn] [Git][med-team/hhsuite][upstream] New upstream version 3.1.0

Michael R. Crusoe pushed to branch upstream at Debian Med / hhsuite Commits: bc1068e5 by Michael R. Crusoe at 2019-02-28T14:16:20Z New upstream version 3.1.0 - - - - - 16 changed files: - .github/ISSUE_TEMPLATE.md - − .gitmodules - .travis.yml - − CHANGES - CMakeLists.txt - + Dockerfile

[med-svn] [Git][med-team/hhsuite][master] document the reason for the new release

Michael R. Crusoe pushed to branch master at Debian Med / hhsuite Commits: 4b9bf32a by Michael R. Crusoe at 2019-02-28T20:08:51Z document the reason for the new release - - - - - 1 changed file: - debian/changelog Changes: = debian/changelog

[med-svn] [Git][med-team/epigrass][master] Start adding py3 and PyQt5 support

Michael R. Crusoe pushed to branch master at Debian Med / epigrass Commits: bcafc854 by Michael R. Crusoe at 2019-03-01T21:20:51Z Start adding py3 and PyQt5 support - - - - - 7 changed files: - debian/changelog - + debian/clean - debian/control - + debian/patches/py3 - debian/patches/series

[med-svn] [Git][med-team/ffindex] Pushed new tag debian/0.9.9.9-2

Michael R. Crusoe pushed new tag debian/0.9.9.9-2 at Debian Med / ffindex -- View it on GitLab: https://salsa.debian.org/med-team/ffindex/tree/debian/0.9.9.9-2 You're receiving this email because of your account on salsa.debian.org. ___ debian-med

[med-svn] [Git][med-team/ffindex][master] release to unstable

Michael R. Crusoe pushed to branch master at Debian Med / ffindex Commits: e961e434 by Michael R. Crusoe at 2019-03-03T19:56:50Z release to unstable - - - - - 1 changed file: - debian/changelog Changes: = debian/changelog

[med-svn] [Git][med-team/hhsuite][master] 6 commits: Mark hhsuite-data as Multi-Arch: foreign

Michael R. Crusoe pushed to branch master at Debian Med / hhsuite Commits: d88e87c3 by Michael R. Crusoe at 2019-03-01T10:10:43Z Mark hhsuite-data as Multi-Arch: foreign - - - - - 2ba87486 by Michael R. Crusoe at 2019-03-01T10:17:39Z add missing ${perl:Depends} - - - - - bb8d63d8 by Michael R

[med-svn] [Git][med-team/ffindex][master] enable cross building

Michael R. Crusoe pushed to branch master at Debian Med / ffindex Commits: 5a7eeb53 by Michael R. Crusoe at 2019-03-03T19:51:53Z enable cross building - - - - - 4 changed files: - debian/changelog - debian/control - + debian/patches/cross.patch - debian/patches/series Changes

[med-svn] [Git][med-team/galaxy-lib][master] make autopkgtests

Michael R. Crusoe pushed to branch master at Debian Med / galaxy-lib Commits: 74e350c7 by Michael R. Crusoe at 2019-03-10T10:35:25Z make autopkgtests - - - - - 5 changed files: - + debian/README.test - debian/docs - + debian/examples - + debian/tests/control - + debian/tests/run-unit-test

[med-svn] [Git][med-team/galaxy-lib][master] 2 commits: drop python2 package

Michael R. Crusoe pushed to branch master at Debian Med / galaxy-lib Commits: 5fb26896 by Michael R. Crusoe at 2019-03-10T07:40:47Z drop python2 package - - - - - 802344d6 by Michael R. Crusoe at 2019-03-10T10:05:28Z run tests, ship docs - - - - - 7 changed files: - debian/control

[med-svn] [Git][med-team/community/package_template][master] make "shellcheck clean" the run-unit-test template

Michael R. Crusoe pushed to branch master at Debian Med / community / package_template Commits: 5fa390ac by Michael R. Crusoe at 2019-02-17T11:07:27Z make shellcheck clean the run-unit-test template - - - - - 1 changed file: - debian/tests/run-unit-test Changes

[med-svn] [Git][med-team/abyss] Pushed new tag debian/2.1.5-7

Michael R. Crusoe pushed new tag debian/2.1.5-7 at Debian Med / abyss -- View it on GitLab: https://salsa.debian.org/med-team/abyss/tree/debian/2.1.5-7 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit

[med-svn] [Git][med-team/trinityrnaseq][master] CXXFLAGS CPPFLAGS to Chrysalis & scaffold_iworm_contigs

Michael R. Crusoe pushed to branch master at Debian Med / trinityrnaseq Commits: 10f51f60 by Michael R. Crusoe at 2019-01-04T15:59:16Z CXXFLAGS CPPFLAGS to Chrysalis scaffold_iworm_contigs and add LDFALGS CPPFLAGS and unshadow CFALGS for seqtk-trinity-0.0.2 - - - - - 5 changed files

[med-svn] [Git][med-team/mira][master] 7 commits: update homepage URL

Michael R. Crusoe pushed to branch master at Debian Med / mira Commits: f1c0778d by Michael R. Crusoe at 2019-02-18T08:30:18Z update homepage URL - - - - - 442690a0 by Michael R. Crusoe at 2019-02-18T08:32:00Z Mark mira-doc as Multi-Arch: foreign - - - - - c162cb46 by Michael R. Crusoe at 2019

[med-svn] [Git][med-team/mypy] Pushed new tag debian/0.670-1

Michael R. Crusoe pushed new tag debian/0.670-1 at Debian Med / mypy -- View it on GitLab: https://salsa.debian.org/med-team/mypy/tree/debian/0.670-1 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit mailing

[med-svn] [Git][med-team/mypy][master] 6 commits: New upstream version 0.670

Michael R. Crusoe pushed to branch master at Debian Med / mypy Commits: 92291d5d by Michael R. Crusoe at 2019-02-09T07:06:29Z New upstream version 0.670 - - - - - b1869f67 by Michael R. Crusoe at 2019-02-09T07:06:40Z Update upstream source from tag upstream/0.670 Update to upstream version

[med-svn] [Git][med-team/bcbio][master] bcbio-doc: mark as "Multi-Arch: foreign"

Michael R. Crusoe pushed to branch master at Debian Med / bcbio Commits: 5e2407d6 by Michael R. Crusoe at 2019-02-10T08:36:48Z bcbio-doc: mark as Multi-Arch: foreign - - - - - 2 changed files: - debian/changelog - debian/control Changes: = debian

[med-svn] [Git][med-team/mypy][master] Include upstream's README.md in the the mypy binary package.

Michael R. Crusoe pushed to branch master at Debian Med / mypy Commits: fb119329 by Michael R. Crusoe at 2019-02-10T08:25:07Z Include upstreams README.md in the the mypy binary package. - - - - - 2 changed files: - debian/changelog - + debian/mypy.docs Changes

[med-svn] [Git][med-team/varna][master] 2 commits: update my email address

Michael R. Crusoe pushed to branch master at Debian Med / varna Commits: f3c46782 by Michael R. Crusoe at 2019-02-14T17:17:12Z update my email address - - - - - 1944e26f by Michael R. Crusoe at 2019-02-14T17:21:35Z Secure URI in copyright format; Standards-Version: 4.3.0 - - - - - 3 changed

[med-svn] [Git][med-team/python-gffutils][master] debhelper 11

Michael R. Crusoe pushed to branch master at Debian Med / python-gffutils Commits: 8de2e999 by Michael R. Crusoe at 2019-02-14T18:12:54Z debhelper 11 - - - - - 3 changed files: - debian/changelog - debian/compat - debian/control Changes: = debian

[med-svn] [Git][med-team/bcbio] Pushed new tag debian/1.1.2-3

Michael R. Crusoe pushed new tag debian/1.1.2-3 at Debian Med / bcbio -- View it on GitLab: https://salsa.debian.org/med-team/bcbio/tree/debian/1.1.2-3 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit

[med-svn] [Git][med-team/bcbio][master] 9 commits: New upstream version 1.1.3

Michael R. Crusoe pushed to branch master at Debian Med / bcbio Commits: d9e2b213 by Michael R. Crusoe at 2019-02-10T08:40:50Z New upstream version 1.1.3 - - - - - d4433341 by Michael R. Crusoe at 2019-02-10T08:41:40Z Update upstream source from tag upstream/1.1.3 Update to upstream version

[med-svn] [Git][med-team/bcbio][pristine-tar] pristine-tar data for bcbio_1.1.3.orig.tar.gz

Michael R. Crusoe pushed to branch pristine-tar at Debian Med / bcbio Commits: cbdf0d82 by Michael R. Crusoe at 2019-02-10T08:41:40Z pristine-tar data for bcbio_1.1.3.orig.tar.gz - - - - - 2 changed files: - + bcbio_1.1.3.orig.tar.gz.delta - + bcbio_1.1.3.orig.tar.gz.id Changes

[med-svn] [Git][med-team/bcbio] Pushed new tag upstream/1.1.3

Michael R. Crusoe pushed new tag upstream/1.1.3 at Debian Med / bcbio -- View it on GitLab: https://salsa.debian.org/med-team/bcbio/tree/upstream/1.1.3 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit

[med-svn] [Git][med-team/bcbio][upstream] New upstream version 1.1.3

Michael R. Crusoe pushed to branch upstream at Debian Med / bcbio Commits: d9e2b213 by Michael R. Crusoe at 2019-02-10T08:40:50Z New upstream version 1.1.3 - - - - - 30 changed files: - .travis.yml - HISTORY.md - bcbio/bam/__init__.py - bcbio/bam/callable.py - bcbio/bam/cram.py - bcbio/bam

[med-svn] [Git][med-team/libthread-pool][master] 3 commits: document Standards-Version: 4.3.0; no changes needed

Michael R. Crusoe pushed to branch master at Debian Med / libthread-pool Commits: 666efa01 by Michael R. Crusoe at 2019-02-15T15:52:00Z document Standards-Version: 4.3.0; no changes needed - - - - - f8ff75e9 by Michael R. Crusoe at 2019-02-15T15:55:24Z Update homepage URL. - - - - - 2002dac2

[med-svn] [Git][med-team/hhsuite][master] Don't build with -march=native

Michael R. Crusoe pushed to branch master at Debian Med / hhsuite Commits: d46775c0 by Michael R. Crusoe at 2019-02-15T15:08:46Z Dont build with -march=native - - - - - 2 changed files: - debian/changelog - debian/patches/disable-AVX-SSE.patch Changes

[med-svn] [Git][med-team/t-coffee][master] 2 commits: Don't hide the build flags

Michael R. Crusoe pushed to branch master at Debian Med / t-coffee Commits: a7229134 by Michael R. Crusoe at 2019-02-15T14:51:38Z Dont hide the build flags - - - - - 48d6ff02 by Michael R. Crusoe at 2019-02-15T14:52:52Z t-coffee-examples: mark Multi-Arch: foreign - - - - - 4 changed files

[med-svn] [Git][med-team/abyss] Pushed new tag debian/2.1.5-5

Michael R. Crusoe pushed new tag debian/2.1.5-5 at Debian Med / abyss -- View it on GitLab: https://salsa.debian.org/med-team/abyss/tree/debian/2.1.5-5 You're receiving this email because of your account on salsa.debian.org. ___ debian-med-commit

[med-svn] [Git][med-team/abyss][master] release to unstable

Michael R. Crusoe pushed to branch master at Debian Med / abyss Commits: 6f1b2f2f by Michael R. Crusoe at 2019-02-15T14:24:02Z release to unstable - - - - - 1 changed file: - debian/changelog Changes: = debian/changelog

[med-svn] [Git][med-team/abyss][master] Fix MPI build

Michael R. Crusoe pushed to branch master at Debian Med / abyss Commits: 0149298f by Michael R. Crusoe at 2019-02-15T14:23:32Z Fix MPI build - - - - - 4 changed files: - debian/changelog - debian/control - debian/rules - debian/tests/run-unit-test Changes

[med-svn] [Git][med-team/libthread-pool][master] respect nocheck

Michael R. Crusoe pushed to branch master at Debian Med / libthread-pool Commits: aaea68ed by Michael R. Crusoe at 2019-02-15T16:43:47Z respect nocheck - - - - - 2 changed files: - debian/control - debian/rules Changes: = debian/control

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