Olivier Sallou pushed to branch master at Debian Med / picard-tools
Commits: 0724ae27 by Olivier Sallou at 2019-01-17T17:48:30Z fix manifest for runtime deps closes #919559 - - - - - c93e1866 by Olivier Sallou at 2019-01-17T17:48:30Z set current investigation status - - - - - 3 changed files: - debian/bin/PicardCommandLine - debian/changelog - + debian/libpicard-java.manifest Changes: ===================================== debian/bin/PicardCommandLine ===================================== @@ -12,4 +12,6 @@ PicardCommandLine) ;; esac export USE_LIBRARY_PATH=USE_LIBRARY_PATH -exec java ${JAVA_OPTIONS-} -jar /usr/share/java/picard.jar "$@" +export PICARD_CLASSPATH=/usr/share/java/picard.jar:/usr/share/java/htsjdk.jar:/usr/share/java/guava.jar:/usr/lib/jvm/default-java/lib/tools.jar:/usr/share/java/commons-lang3.jar:/usr/share/java/gkl.jar:/usr/share/java/gatk-native-bindings.jar:/usr/share/java/barclay.jar + +exec java ${JAVA_OPTIONS-} -cp $PICARD_CLASSPATH picard.cmdline.PicardCommandLine "$@" ===================================== debian/changelog ===================================== @@ -1,3 +1,11 @@ +picard-tools (2.18.23+dfsg-2) UNRELEASE; urgency=medium + + * Fix Class-Path in manifest file for dependencies (Closes: #919559). + [TODO] 2 tests are still failing with autopkgtest though source build + and testing works fine. + + -- Olivier Sallou <osal...@debian.org> Thu, 17 Jan 2019 15:54:27 +0000 + picard-tools (2.18.23+dfsg-1) unstable; urgency=medium * New upstream version ===================================== debian/libpicard-java.manifest ===================================== @@ -0,0 +1,3 @@ +usr/share/java/picard.jar: + Main-Class: picard.cmdline.PicardCommandLine + Class-Path: /usr/share/java/htsjdk.jar:/usr/share/java/guava.jar:/usr/lib/jvm/default-java/lib/tools.jar:/usr/share/java/commons-lang3.jar:/usr/share/java/gkl.jar:/usr/share/java/gatk-native-bindings.jar:/usr/share/java/barclay.jar View it on GitLab: https://salsa.debian.org/med-team/picard-tools/compare/077712af88da3e0f85fb1c3949b7c468b895577a...c93e1866f9549e899c8ce00549e94bd3b53f1804 -- View it on GitLab: https://salsa.debian.org/med-team/picard-tools/compare/077712af88da3e0f85fb1c3949b7c468b895577a...c93e1866f9549e899c8ce00549e94bd3b53f1804 You're receiving this email because of your account on salsa.debian.org.
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