Steffen Möller pushed to branch master at Debian Med / staden-io-lib
Commits: b27ab65f by Steffen Moeller at 2020-05-21T00:31:14+02:00 New version. - - - - - 5 changed files: - debian/changelog - debian/control - debian/patches/series - + debian/patches/usedebianhtscodecs.patch - debian/rules Changes: ===================================== debian/changelog ===================================== @@ -1,11 +1,22 @@ -staden-io-lib (1.14.12-1) UNRELEASED; urgency=medium +staden-io-lib (1.14.12-1) unstable; urgency=medium + * Team upload. + + [ Michael Crusoe ] * New upstream version * Standards-Version: 4.5.0 (routine-update) * debhelper-compat 12 (routine-update) * Remove many patches incorporated upstream * autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g (routine-update) + [ Steffen Moeller ] + * Fixed FTBFS - added dep on libhtscodecs-dev now distributed + as a git submodule of staden-io-lib. + * Rules-Requires-Root: no + * Adjusted library package name to updated soversion 14 + * Added extra argument to d-shlibmove to override search for + unversioned libhtscodecs-dev package + -- Michael R. Crusoe <michael.cru...@gmail.com> Mon, 10 Feb 2020 10:51:13 +0100 staden-io-lib (1.14.11-6) unstable; urgency=medium ===================================== debian/control ===================================== @@ -9,11 +9,13 @@ Priority: optional Build-Depends: debhelper-compat (= 12), zlib1g-dev, libcurl4-gnutls-dev | libcurl4-nss-dev, + libhtscodecs-dev, d-shlibs Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/staden-io-lib Vcs-Git: https://salsa.debian.org/med-team/staden-io-lib.git Homepage: https://github.com/jkbonfield/io_lib +Rules-Requires-Root: no Package: staden-io-lib-utils Architecture: any @@ -34,7 +36,7 @@ Description: programs for manipulating DNA sequencing files Package: libstaden-read-dev Architecture: any Section: libdevel -Depends: libstaden-read13 (= ${binary:Version}), +Depends: libstaden-read14 (= ${binary:Version}), ${misc:Depends}, ${devlibs:Depends} Description: development files for libstaden-read @@ -46,7 +48,7 @@ Description: development files for libstaden-read interface. It has been compiled and tested on a variety of unix systems, MacOS X and MS Windows. -Package: libstaden-read13 +Package: libstaden-read14 Architecture: any Multi-Arch: same Section: libs ===================================== debian/patches/series ===================================== @@ -1,3 +1,4 @@ pathmax.patch fix_fseeko.patch spelling +usedebianhtscodecs.patch ===================================== debian/patches/usedebianhtscodecs.patch ===================================== @@ -0,0 +1,26 @@ +Index: staden-io-lib/Makefile.am +=================================================================== +--- staden-io-lib.orig/Makefile.am ++++ staden-io-lib/Makefile.am +@@ -32,7 +32,7 @@ + AUTOMAKE_OPTIONS = foreign no-dependencies + ACLOCAL_AMFLAGS = -I m4 + +-SUBDIRS = htscodecs io_lib progs tests ++SUBDIRS = io_lib progs tests + + man_MANS = \ + man/man1/srf_index_hash.1 \ +Index: staden-io-lib/io_lib/Makefile.am +=================================================================== +--- staden-io-lib.orig/io_lib/Makefile.am ++++ staden-io-lib/io_lib/Makefile.am +@@ -134,6 +134,6 @@ libstaden_read_la_SOURCES = \ + bgzip.h \ + cram_block_compression.h + +-libstaden_read_la_CPPFLAGS = -I${top_srcdir} -I${top_srcdir}/htscodecs @LIBCURL_CPPFLAGS@ ++libstaden_read_la_CPPFLAGS = -I${top_srcdir} -I/usr/include/htscodecs @LIBCURL_CPPFLAGS@ + libstaden_read_la_LDFLAGS = -version-info @VERS_CURRENT@:@VERS_REVISION@:@VERS_AGE@ +-libstaden_read_la_LIBADD = @LIBZ@ @LIBCURL@ ${top_builddir}/htscodecs/htscodecs/libhtscodecs.la ++libstaden_read_la_LIBADD = @LIBZ@ @LIBCURL@ -lhtscodecs ===================================== debian/rules ===================================== @@ -27,6 +27,7 @@ override_dh_install-arch: --devunversioned \ --exclude-la \ --movedev "debian/tmp/usr/include" usr \ + --override s/libhtscodecs2-dev/libhtscodecs-dev/ \ debian/tmp/usr/lib/*/$(libpkg).so # # make sure io_lib-config --libs will not return -pie (see #825461) @@ -63,6 +64,7 @@ override_dh_fixperms-indep: override_dh_auto_clean: dh_auto_clean rm -f tests/.done tests/data/ce\#sorted.sam tests/data/ce\#unsorted.sam + rm -f config.sub config.guess ## ## Try to verify correct ABI version right in the beginning ## Strangely enough d-shlibmove fails in detecting it in this package View it on GitLab: https://salsa.debian.org/med-team/staden-io-lib/-/commit/b27ab65ff3033e3a02a0ade35ab5e4c1e33ae765 -- View it on GitLab: https://salsa.debian.org/med-team/staden-io-lib/-/commit/b27ab65ff3033e3a02a0ade35ab5e4c1e33ae765 You're receiving this email because of your account on salsa.debian.org.
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