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domibel pushed a commit to branch master
in repository bamtools.
commit 4217b65a3084f905d41126d9cee467fc1159c703
Author: Dominique Belhachemi <domi...@debian.org>
Date: Sun Dec 20 17:48:47 2015 -0500
add example files from SAM/BAM Format Specification
---
debian/patches/add_sam_spec_example.patch | 13 +++++++++++++
debian/patches/series | 1 +
debian/source/include-binaries | 1 +
sam_spec_example.bam | Bin 0 -> 375 bytes
4 files changed, 15 insertions(+)
diff --git a/debian/patches/add_sam_spec_example.patch
b/debian/patches/add_sam_spec_example.patch
new file mode 100644
index 0000000..a6f010c
--- /dev/null
+++ b/debian/patches/add_sam_spec_example.patch
@@ -0,0 +1,13 @@
+Description: sam example from SAM/BAM Format Specification
+
+--- /dev/null
++++ bamtools-2.4.0+dfsg/sam_spec_example.sam
+@@ -0,0 +1,8 @@
++@HD VN:1.5 SO:coordinate
++@SQ SN:ref LN:45
++r001 99 ref 7 30 8M2I4M1D3M = 37 39
TTAGATAAAGGATACTG *
++r002 0 ref 9 30 3S6M1P1I4M * 0 0
AAAAGATAAGGATA *
++r003 0 ref 9 30 5S6M * 0 0
GCCTAAGCTAA * SA:Z:ref,29,-,6H5M,17,0;
++r004 0 ref 16 30 6M14N5M * 0 0
ATAGCTTCAGC *
++r003 2064 ref 29 17 6H5M * 0 0 TAGGC
* SA:Z:ref,9,+,5S6M,30,1;
++r001 147 ref 37 30 9M = 7 -39
CAGCGGCAT * NM:i:1
diff --git a/debian/patches/series b/debian/patches/series
index 8e3563c..0961fb3 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -6,3 +6,4 @@
0006-Fix-Doxyfile-input-source-path.patch
0007-Big_Endian.patch
0008_Cmake_Test.patch
+add_sam_spec_example.patch
diff --git a/debian/source/include-binaries b/debian/source/include-binaries
new file mode 100644
index 0000000..a701cd4
--- /dev/null
+++ b/debian/source/include-binaries
@@ -0,0 +1 @@
+sam_spec_example.bam
diff --git a/sam_spec_example.bam b/sam_spec_example.bam
new file mode 100644
index 0000000..7e460a1
Binary files /dev/null and b/sam_spec_example.bam differ
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