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commit 3034f8443029b6f28bc5ab4b4afa47785334b856 Author: Afif Elghraoui <a...@debian.org> Date: Tue Oct 11 21:10:51 2016 -0700 Update patches... --- debian/patches/cflags.patch | 6 ++++-- debian/patches/destdir-install.patch | 4 ++-- debian/patches/lddflags.patch | 29 +++++++++++------------------ 3 files changed, 17 insertions(+), 22 deletions(-) diff --git a/debian/patches/cflags.patch b/debian/patches/cflags.patch index ad6e94f..045be72 100644 --- a/debian/patches/cflags.patch +++ b/debian/patches/cflags.patch @@ -4,9 +4,11 @@ Forwarded: not-needed Last-Update: 2016-01-08 --- daligner.orig/Makefile +++ daligner/Makefile -@@ -1,4 +1,4 @@ +@@ -1,6 +1,6 @@ + DEST_DIR = ~/bin + -CFLAGS = -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing +CFLAGS += -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing - ALL = daligner HPCdaligner HPCmapper LAsort LAmerge LAsplit LAcat LAshow LAdump LAcheck LAindex + ALL = daligner HPC.daligner LAsort LAmerge LAsplit LAcat LAshow LAdump LAcheck LAindex diff --git a/debian/patches/destdir-install.patch b/debian/patches/destdir-install.patch index 5bfb224..d33b5e3 100644 --- a/debian/patches/destdir-install.patch +++ b/debian/patches/destdir-install.patch @@ -4,11 +4,11 @@ Forwarded: not-needed Last-Update: 2016-01-08 --- daligner.orig/Makefile +++ daligner/Makefile -@@ -47,7 +47,8 @@ +@@ -37,7 +37,8 @@ rm -f daligner.tar.gz install: -- cp $(ALL) ~/bin +- cp $(ALL) $(DEST_DIR) + install -d $(DESTDIR)/usr/bin + install $(ALL) $(DESTDIR)/usr/bin diff --git a/debian/patches/lddflags.patch b/debian/patches/lddflags.patch index 092704e..e92ec4a 100644 --- a/debian/patches/lddflags.patch +++ b/debian/patches/lddflags.patch @@ -6,56 +6,49 @@ Forwarded: not-needed Last-Update: 2016-01-08 --- daligner.orig/Makefile +++ daligner/Makefile -@@ -5,40 +5,40 @@ +@@ -1,43 +1,34 @@ + DEST_DIR = ~/bin + + CFLAGS += -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing ++LDFLAGS += -lm + + ALL = daligner HPC.daligner LAsort LAmerge LAsplit LAcat LAshow LAdump LAcheck LAindex + all: $(ALL) ++daligner: LDFLAGS += -lpthread daligner: daligner.c filter.c filter.h align.c align.h DB.c DB.h QV.c QV.h - gcc $(CFLAGS) -o daligner daligner.c filter.c align.c DB.c QV.c -lpthread -lm -+ gcc $(CFLAGS) -o daligner daligner.c filter.c align.c DB.c QV.c -lpthread -lm $(LDFLAGS) - - HPCdaligner: HPCdaligner.c DB.c DB.h QV.c QV.h -- gcc $(CFLAGS) -o HPCdaligner HPCdaligner.c DB.c QV.c -lm -+ gcc $(CFLAGS) -o HPCdaligner HPCdaligner.c DB.c QV.c -lm $(LDFLAGS) - HPCmapper: HPCmapper.c DB.c DB.h QV.c QV.h -- gcc $(CFLAGS) -o HPCmapper HPCmapper.c DB.c QV.c -lm -+ gcc $(CFLAGS) -o HPCmapper HPCmapper.c DB.c QV.c -lm $(LDFLAGS) + HPC.daligner: HPC.daligner.c DB.c DB.h QV.c QV.h +- gcc $(CFLAGS) -o HPC.daligner HPC.daligner.c DB.c QV.c -lm LAsort: LAsort.c align.h DB.c DB.h QV.c QV.h - gcc $(CFLAGS) -o LAsort LAsort.c DB.c QV.c -lm -+ gcc $(CFLAGS) -o LAsort LAsort.c DB.c QV.c -lm $(LDFLAGS) LAmerge: LAmerge.c align.h DB.c DB.h QV.c QV.h - gcc $(CFLAGS) -o LAmerge LAmerge.c DB.c QV.c -lm -+ gcc $(CFLAGS) -o LAmerge LAmerge.c DB.c QV.c -lm $(LDFLAGS) LAshow: LAshow.c align.c align.h DB.c DB.h QV.c QV.h - gcc $(CFLAGS) -o LAshow LAshow.c align.c DB.c QV.c -lm -+ gcc $(CFLAGS) -o LAshow LAshow.c align.c DB.c QV.c -lm $(LDFLAGS) LAdump: LAdump.c align.c align.h DB.c DB.h QV.c QV.h - gcc $(CFLAGS) -o LAdump LAdump.c align.c DB.c QV.c -lm -+ gcc $(CFLAGS) -o LAdump LAdump.c align.c DB.c QV.c -lm $(LDFLAGS) LAcat: LAcat.c align.h DB.c DB.h QV.c QV.h - gcc $(CFLAGS) -o LAcat LAcat.c DB.c QV.c -lm -+ gcc $(CFLAGS) -o LAcat LAcat.c DB.c QV.c -lm $(LDFLAGS) LAsplit: LAsplit.c align.h DB.c DB.h QV.c QV.h - gcc $(CFLAGS) -o LAsplit LAsplit.c DB.c QV.c -lm -+ gcc $(CFLAGS) -o LAsplit LAsplit.c DB.c QV.c -lm $(LDFLAGS) LAcheck: LAcheck.c align.c align.h DB.c DB.h QV.c QV.h - gcc $(CFLAGS) -o LAcheck LAcheck.c align.c DB.c QV.c -lm -+ gcc $(CFLAGS) -o LAcheck LAcheck.c align.c DB.c QV.c -lm $(LDFLAGS) LAupgrade.Dec.31.2014: LAupgrade.Dec.31.2014.c align.c align.h DB.c DB.h QV.c QV.h - gcc $(CFLAGS) -o LAupgrade.Dec.31.2014 LAupgrade.Dec.31.2014.c align.c DB.c QV.c -lm -+ gcc $(CFLAGS) -o LAupgrade.Dec.31.2014 LAupgrade.Dec.31.2014.c align.c DB.c QV.c -lm $(LDFLAGS) LAindex: LAindex.c align.c align.h DB.c DB.h QV.c QV.h - gcc $(CFLAGS) -o LAindex LAindex.c align.c DB.c QV.c -lm -+ gcc $(CFLAGS) -o LAindex LAindex.c align.c DB.c QV.c -lm $(LDFLAGS) clean: rm -f $(ALL) -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/daligner.git _______________________________________________ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit