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commit 80bbe17288c0e29e520fcfc92f7ec7274c427962 Author: Sascha Steinbiss <sa...@debian.org> Date: Sun Aug 6 16:14:27 2017 +0200 WIP: ner upstream --- debian/changelog | 7 +++++++ debian/genometools-common.install | 19 +------------------ debian/patches/adding_soname | 4 ++-- debian/patches/libbam-fix | 6 +++--- debian/patches/reproducible | 4 ++-- debian/patches/series | 2 -- 6 files changed, 15 insertions(+), 27 deletions(-) diff --git a/debian/changelog b/debian/changelog index 42b65dd..0bc9716 100644 --- a/debian/changelog +++ b/debian/changelog @@ -1,3 +1,10 @@ +genometools (1.5.10+ds-1) UNRELEASED; urgency=medium + + * New upstream release. + * Drop and update patches applied upstream. + + -- Sascha Steinbiss <sa...@debian.org> Sun, 06 Aug 2017 15:59:14 +0200 + genometools (1.5.9+ds-5) unstable; urgency=medium * Change test data to make run less problematic. diff --git a/debian/genometools-common.install b/debian/genometools-common.install index 1ffbe54..7e21d50 100644 --- a/debian/genometools-common.install +++ b/debian/genometools-common.install @@ -1,18 +1 @@ -usr/bin/gtdata/doc usr/share/genometools/gtdata -usr/bin/gtdata/obo_files usr/share/genometools/gtdata -usr/bin/gtdata/sketch usr/share/genometools/gtdata -usr/bin/gtdata/spec usr/share/genometools/gtdata -usr/bin/gtdata/trans usr/share/genometools/gtdata -usr/bin/gtdata/xrf_abbr usr/share/genometools/gtdata -usr/bin/gtdata/modules/fileutils.lua usr/share/genometools/gtdata/modules -usr/bin/gtdata/modules/gtdoclib.lua usr/share/genometools/gtdata/modules -usr/bin/gtdata/modules/gtdoclib usr/share/genometools/gtdata/modules -usr/bin/gtdata/modules/gtlua.lua usr/share/genometools/gtdata/modules -usr/bin/gtdata/modules/gtlua usr/share/genometools/gtdata/modules -usr/bin/gtdata/modules/gtmodulehelper.lua usr/share/genometools/gtdata/modules -usr/bin/gtdata/modules/stringext.lua usr/share/genometools/gtdata/modules -usr/bin/gtdata/modules/warning.lua usr/share/genometools/gtdata/modules -usr/bin/gtdata/modules/gtlua.lua usr/share/genometools/gtdata/modules -usr/bin/gtdata/modules/external/md5.lua usr/share/genometools/gtdata/modules/external -usr/bin/gtdata/modules/external/re.lua usr/share/genometools/gtdata/modules/external - +usr/share/genometools/gtdata usr/share/genometools diff --git a/debian/patches/adding_soname b/debian/patches/adding_soname index 5d59b48..bd33df8 100644 --- a/debian/patches/adding_soname +++ b/debian/patches/adding_soname @@ -13,7 +13,7 @@ Author: Sascha Steinbiss <steinb...@zbh.uni-hamburg.de> # compiled executables GTMAIN_SRC:=src/gt.c src/gtr.c src/gtt.c src/interactive.c -@@ -622,8 +623,9 @@ +@@ -628,8 +629,9 @@ $(V_ECHO) "[link $(@F)]" $(V_DO)test -d $(@D) || mkdir -p $(@D) $(V_DO)$(CC) $(EXP_LDFLAGS) $(VERSION_SCRIPT_PARAM) \ @@ -25,7 +25,7 @@ Author: Sascha Steinbiss <steinb...@zbh.uni-hamburg.de> define PROGRAM_template $(1): $(2) -@@ -990,7 +992,8 @@ +@@ -1003,7 +1005,8 @@ $(RANLIB) $(prefix)/lib/libgenometools.a endif ifneq ($(sharedlib),no) diff --git a/debian/patches/libbam-fix b/debian/patches/libbam-fix index 72cef54..6ab230c 100644 --- a/debian/patches/libbam-fix +++ b/debian/patches/libbam-fix @@ -5,7 +5,7 @@ Author: Sascha Steinbiss <steinb...@zbh.uni-hamburg.de> --- a/Makefile +++ b/Makefile -@@ -601,6 +601,10 @@ +@@ -607,6 +607,10 @@ $(V_DO)$(RANLIB) $@ endif @@ -16,7 +16,7 @@ Author: Sascha Steinbiss <steinb...@zbh.uni-hamburg.de> lib/libgenometools.a: obj/gt_config.h $(LIBGENOMETOOLS_OBJ) $(V_ECHO) "[link $(@F)]" $(V_DO)test -d $(@D) || mkdir -p $(@D) -@@ -619,13 +623,14 @@ +@@ -625,13 +629,14 @@ $(LIBGENOMETOOLS_OBJ) \ $(ADDITIONAL_SO_DEPS) \ $(ADDITIONAL_ZLIBS) \ @@ -32,7 +32,7 @@ Author: Sascha Steinbiss <steinb...@zbh.uni-hamburg.de> define PROGRAM_template $(1): $(2) -@@ -638,46 +643,55 @@ +@@ -644,46 +649,55 @@ $(eval $(call PROGRAM_template, bin/gt, $(GTMAIN_OBJ) $(TOOLS_OBJ) \ lib/libgenometools.a \ diff --git a/debian/patches/reproducible b/debian/patches/reproducible index ea10bcf..983636d 100644 --- a/debian/patches/reproducible +++ b/debian/patches/reproducible @@ -10,7 +10,7 @@ Author: Sascha Steinbiss <sa...@debian.org> INCLUDEOPT:=-I$(CURDIR)/src -I$(CURDIR)/obj ifeq ($(shell pkg-config --version > /dev/null 2> /dev/null; echo $$?),0) -@@ -706,7 +707,7 @@ +@@ -712,7 +713,7 @@ $(V_DO)(echo '#ifndef GT_CONFIG_H' ;\ echo '#define GT_CONFIG_H' ;\ echo '#define GT_CC "'`$(CC) --version | head -n 1`\" ;\ @@ -19,7 +19,7 @@ Author: Sascha Steinbiss <sa...@debian.org> echo '$(EXP_CPPFLAGS) $(GT_CPPFLAGS)' | \ sed -e 's/\([^\]\)"/\1\\"/g' -e 's/^"/\\"/g' -e 's/$$/"/' \ -e 's/^/#define GT_CPPFLAGS "/'; \ -@@ -910,6 +911,10 @@ +@@ -922,6 +923,10 @@ bin/examples/sketch_constructed gtdata/sketch/default.style \ www/genometools.org/htdocs/images/constructed.png endif diff --git a/debian/patches/series b/debian/patches/series index c49fe86..62b5eaa 100644 --- a/debian/patches/series +++ b/debian/patches/series @@ -8,5 +8,3 @@ split-manuals use-mx32 gtdoc-traverse-sorted ignore-m32-m64.patch -spelling.patch -fix_caption.patch -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/genometools.git _______________________________________________ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit