This is an automated email from the git hooks/post-receive script. rovenskasa-guest pushed a commit to branch master in repository mapdamage.
commit c0be20d8c2d6f7a5ab8daf526605e1ea97443f61 Author: Nadiya Sitdykova <rovensk...@gmail.com> Date: Wed Mar 29 21:17:12 2017 -0400 Revised simple tests for examples from documentation --- debian/changelog | 2 ++ debian/tests/run-unit-test | 14 +++++++------- 2 files changed, 9 insertions(+), 7 deletions(-) diff --git a/debian/changelog b/debian/changelog index 5f33eed..9687de0 100644 --- a/debian/changelog +++ b/debian/changelog @@ -22,6 +22,8 @@ mapdamage (2.0.6+dfsg-2) UNRELEASED; urgency=medium * Add dependency providing liblapack.so and libblas.so * Add file with reference containing all types of nucleotides * Add information how to check R libraries and what to do in case of errors to README.test + * Revised simple tests for examples from documentation + Closes: #848326 -- rovenskasa-guest <rovensk...@gmail.com> Thu, 23 Mar 2017 21:34:41 -0700 diff --git a/debian/tests/run-unit-test b/debian/tests/run-unit-test index 286b7d9..dd4092e 100644 --- a/debian/tests/run-unit-test +++ b/debian/tests/run-unit-test @@ -10,11 +10,12 @@ fi cd $ADTTMP cp -a /usr/share/doc/${pkg}/tests/* . +cp -a /usr/share/doc/${pkg}/ref_T.fa . gunzip -r * python rescale_test.py -mapDamage -i rescale_test/pe_test/pe.sam -r rescale_test/pe_test/ref.fa +mapDamage -i rescale_test/pe_test/pe.sam -r ref_T.fa pdf_result="results_pe/Fragmisincorporation_plot.pdf" if [ -e "$pdf_result" ]; then @@ -27,13 +28,12 @@ fi mapDamage -d results_pe -y 0.1 --plot-only echo "checking stdin redirect..." -cat rescale_test/pe_test/pe.sam | mapDamage -i - -r rescale_test/pe_test/ref.fa +cat rescale_test/pe_test/pe.sam | mapDamage -i - -r ref_T.fa -#rm -rf results_pe -#mapDamage -i rescale_test/pe_test/pe.sam -r rescale_test/pe_test/ref.fa --rescale -#--rescale doesn't work without R-libraries +rm -rf results_pe +mapDamage -i rescale_test/pe_test/pe.sam -r ref_T.fa --rescale -#mapDamage -d results_pe --forward --stats-only -v -#asks for -r reference when shouldn't +mapDamage -d results_pe --forward --stats-only -v -r ref_T.fa +#asks for -r reference when it's not mentioned in examples -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/mapdamage.git _______________________________________________ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit