[med-svn] r5630 - trunk/packages/gnumed-client/tags

2010-12-30 Thread Andreas Tille
Author: tille Date: 2010-12-30 19:37:58 + (Thu, 30 Dec 2010) New Revision: 5630 Added: trunk/packages/gnumed-client/tags/0.7.10-1/ Removed: trunk/packages/gnumed-client/tags/0.7.10/ Log: Fixed tag og gnmed-client security update ___

[med-svn] r5631 - in trunk/packages/gnumed-client/tags: . 0.7.10-2 0.7.10-2/conf

2010-12-30 Thread Andreas Tille
: #608190 + + -- Andreas Tille ti...@debian.org Wed, 29 Dec 2010 08:29:27 +0100 + +gnumed-client (0.8.5-1) unstable; urgency=low + + * Upstream bugfix release. + + -- Andreas Tille ti...@debian.org Sun, 05 Dec 2010 23:37:38 +0100 + gnumed-client (0.7.10-1) testing-proposed-updates; urgency=low

[med-svn] r5632 - trunk/packages/gnumed-client/trunk/debian

2010-12-30 Thread Andreas Tille
- just remove (I just introduced a changelog entry +for the security upload below) + + -- Andreas Tille ti...@debian.org Thu, 30 Dec 2010 20:45:54 +0100 + +gnumed-client (0.7.10-2) testing-proposed-updates; urgency=low + + * Fix /etc/gnumed/gnumed-client.conf which was referencing a future

[med-svn] r5641 - in trunk/packages: . biomaj

2011-01-07 Thread Andreas Tille
Author: tille Date: 2011-01-07 12:08:34 + (Fri, 07 Jan 2011) New Revision: 5641 Added: trunk/packages/biomaj/ trunk/packages/biomaj/trunk/ Log: Create dir for BioMAJ packaging ___ debian-med-commit mailing list

[med-svn] r5642 - trunk/community/website

2011-01-07 Thread Andreas Tille
Author: tille Date: 2011-01-07 20:11:46 + (Fri, 07 Jan 2011) New Revision: 5642 Modified: trunk/community/website/index.php Log: Exclude link to ddtp pages because non-functional for a long time; needs fixing - most probably using the Python code which is used for tasks / bugs pages.

[med-svn] r5644 - trunk/packages/gnumed-client/tags

2011-01-10 Thread Andreas Tille
Author: tille Date: 2011-01-11 07:28:01 + (Tue, 11 Jan 2011) New Revision: 5644 Removed: trunk/packages/gnumed-client/tags/0.7.6-1/ trunk/packages/gnumed-client/tags/0.7.6-2/ trunk/packages/gnumed-client/tags/0.7.7-1/ trunk/packages/gnumed-client/tags/0.7.8-1/

[med-svn] r5645 - trunk/packages/gnumed-server/trunk/debian

2011-01-11 Thread Andreas Tille
=== --- trunk/packages/gnumed-server/trunk/debian/changelog 2011-01-11 07:28:01 UTC (rev 5644) +++ trunk/packages/gnumed-server/trunk/debian/changelog 2011-01-11 08:06:26 UTC (rev 5645) @@ -1,3 +1,9 @@ +gnumed-server (14.6-1) unstable; urgency=low + + * New upstream version + + -- Andreas

[med-svn] r5646 - trunk/packages/gnumed-server/tags

2011-01-11 Thread Andreas Tille
Author: tille Date: 2011-01-11 08:08:35 + (Tue, 11 Jan 2011) New Revision: 5646 Added: trunk/packages/gnumed-server/tags/14.6-1/ Log: Tagged 14.6-1 ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org

[med-svn] r5647 - trunk/packages/gnumed-client/trunk/debian

2011-01-11 Thread Andreas Tille
upload below) + * New upstream version - -- Andreas Tille ti...@debian.org Thu, 30 Dec 2010 20:45:54 +0100 + -- Andreas Tille ti...@debian.org Tue, 11 Jan 2011 09:53:51 +0100 +gnumed-client (0.7.10-2.1) testing-proposed-updates; urgency=low + + * Non-maintainer upload. + * Drop misplaced

[med-svn] r5648 - trunk/packages/gnumed-client/tags

2011-01-11 Thread Andreas Tille
Author: tille Date: 2011-01-11 10:14:57 + (Tue, 11 Jan 2011) New Revision: 5648 Added: trunk/packages/gnumed-client/tags/0.8.6-1/ Log: Tagged 0.8.6-1 ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org

[med-svn] r5651 - trunk/packages/biomaj/trunk/debian

2011-01-11 Thread Andreas Tille
Author: tille Date: 2011-01-11 13:26:04 + (Tue, 11 Jan 2011) New Revision: 5651 Removed: trunk/packages/biomaj/trunk/debian/biomaj/ Log: Delete installed files of biomaj ___ debian-med-commit mailing list

[med-svn] r5652 - trunk/packages/biomaj/trunk/debian

2011-01-11 Thread Andreas Tille
Author: tille Date: 2011-01-11 13:27:41 + (Tue, 11 Jan 2011) New Revision: 5652 Removed: trunk/packages/biomaj/trunk/debian/biomaj.debhelper.log trunk/packages/biomaj/trunk/debian/biomaj.postrm.debhelper trunk/packages/biomaj/trunk/debian/biomaj.substvars

[med-svn] r5654 - trunk/packages/biomaj/trunk/debian

2011-01-11 Thread Andreas Tille
Author: tille Date: 2011-01-11 13:38:28 + (Tue, 11 Jan 2011) New Revision: 5654 Added: trunk/packages/biomaj/trunk/debian/biomaj.postinst trunk/packages/biomaj/trunk/debian/biomaj.postrm trunk/packages/biomaj/trunk/debian/biomaj.prerm Removed:

[med-svn] r5656 - in trunk/packages/amap-align/branches/upstream: 2.0 current

2011-01-13 Thread Andreas Tille
Author: tille Date: 2011-01-13 13:00:54 + (Thu, 13 Jan 2011) New Revision: 5656 Removed: trunk/packages/amap-align/branches/upstream/2.0/amap trunk/packages/amap-align/branches/upstream/current/amap Log: Removed binaries but leave the code because it vanished upstream Deleted:

[med-svn] r5657 - trunk/packages/amap-align/trunk/debian

2011-01-13 Thread Andreas Tille
[ Charles Plessy ] * Updated my email address. @@ -6,8 +6,23 @@ [ David Paleino ] * debian/control: removed myself from Uploaders - -- David Paleino d.pale...@gmail.com Wed, 13 May 2009 07:29:37 +0200 + [ Andreas Tille ] + * debian/control: +- Standards-Version: 3.9.1

[med-svn] r5658 - trunk/packages/amap-align/tags

2011-01-13 Thread Andreas Tille
Author: tille Date: 2011-01-13 13:22:40 + (Thu, 13 Jan 2011) New Revision: 5658 Added: trunk/packages/amap-align/tags/2.2-2/ Log: Tagges 2.2-2 ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org

[med-svn] r5659 - trunk/packages/boxshade

2011-01-14 Thread Andreas Tille
Author: tille Date: 2011-01-14 07:34:40 + (Fri, 14 Jan 2011) New Revision: 5659 Removed: trunk/packages/boxshade/branches/ Log: Remove upstream code ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org

[med-svn] r5660 - in trunk/packages/boxshade/trunk/debian: . source

2011-01-14 Thread Andreas Tille
myself from Uploaders - -- David Paleino d.pale...@gmail.com Sat, 23 May 2009 14:42:17 +0200 + [ Andreas Tille ] + * debian/control +- Standards-Version: 3.9.1 (no changes needed) +- Debhelper 7 +- Fix spelling of Debian Med in maintainer address + * debian/rules: s/dh_clean -k/dh_prep

[med-svn] r5661 - in trunk/packages/fastlink/trunk/debian: . source

2011-01-14 Thread Andreas Tille
to make sure the +resulting tarball will be identically + * debian/source/format: 3.0 (quilt) + * debian/rules: remove dh_desktop call + + -- Andreas Tille ti...@debian.org Fri, 14 Jan 2011 08:40:14 +0100 + fastlink (4.1P-fix95-1) unstable; urgency=low * New upstream bugfix release

[med-svn] r5662 - trunk/packages/fastlink/tags

2011-01-14 Thread Andreas Tille
Author: tille Date: 2011-01-14 09:27:01 + (Fri, 14 Jan 2011) New Revision: 5662 Added: trunk/packages/fastlink/tags/4.1P-fix95-2/ Log: Tagged 4.1P-fix95-2 ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org

[med-svn] r5663 - trunk/packages/dialign

2011-01-14 Thread Andreas Tille
Author: tille Date: 2011-01-14 12:35:07 + (Fri, 14 Jan 2011) New Revision: 5663 Removed: trunk/packages/dialign/branches/ Log: Removed upstream source ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org

[med-svn] r5664 - in trunk/packages/dialign/trunk/debian: . patches source

2011-01-14 Thread Andreas Tille
of the bibliographic reference in ‘debian/control’. - -- David Paleino d.pale...@gmail.com Sat, 23 May 2009 14:42:57 +0200 + [ Andreas Tille ] + * debian/control: +- Standards-Version: 3.9.1 (no changes needed) +- Debhelper 7 +- s/dpatch/quilt/ +- spelling of Debian Med + * debian/patches

[med-svn] r5665 - in trunk/packages/dialign-t/trunk/debian: . source

2011-01-14 Thread Andreas Tille
in ‘debian/upstream-metadata.yaml’. * Removed mention of the bibliographic reference in ‘debian/control’. - -- Charles Plessy ple...@debian.org Sun, 03 Jan 2010 18:33:51 +0900 + [ Andreas Tille ] + * Added myself to uploaders + * Standards-Version: 3.9.1 (no changes needed) + * debian/source

[med-svn] r5666 - trunk/packages/dialign-t/tags

2011-01-14 Thread Andreas Tille
Author: tille Date: 2011-01-14 15:41:35 + (Fri, 14 Jan 2011) New Revision: 5666 Added: trunk/packages/dialign-t/tags/1.0.2-2/ Log: Tagged 1.0.2-2 ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org

[med-svn] r5672 - trunk/packages/med-doc/trunk

2011-01-16 Thread Andreas Tille
Author: tille Date: 2011-01-16 21:42:07 + (Sun, 16 Jan 2011) New Revision: 5672 Modified: trunk/packages/med-doc/trunk/ Log: remove svn:externals Property changes on: trunk/packages/med-doc/trunk ___ Deleted: svn:externals

[med-svn] r5673 - trunk/packages/med-doc/tags/0.7

2011-01-16 Thread Andreas Tille
Author: tille Date: 2011-01-16 21:43:42 + (Sun, 16 Jan 2011) New Revision: 5673 Modified: trunk/packages/med-doc/tags/0.7/ Log: Remove svn:externals Property changes on: trunk/packages/med-doc/tags/0.7 ___ Deleted:

[med-svn] r5676 - trunk/packages/freediams/trunk/debian

2011-01-17 Thread Andreas Tille
=== --- trunk/packages/freediams/trunk/debian/changelog 2011-01-16 22:20:31 UTC (rev 5675) +++ trunk/packages/freediams/trunk/debian/changelog 2011-01-17 08:16:24 UTC (rev 5676) @@ -1,10 +1,13 @@ freediams (0.5.4-1) unstable; urgency=low + [ Andreas Tille ] + * New upstream

[med-svn] r5677 - trunk/packages/freediams/tags

2011-01-17 Thread Andreas Tille
Author: tille Date: 2011-01-17 08:18:03 + (Mon, 17 Jan 2011) New Revision: 5677 Added: trunk/packages/freediams/tags/0.5.4-1/ Log: Tagged 0.5.4-1 ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org

[med-svn] r5680 - trunk/packages/velvet/trunk/debian

2011-01-18 Thread Andreas Tille
=low + + * New upstream version + * debian/get-orig-source: Make sure MD5sum stays the same for different +download + + -- Andreas Tille ti...@debian.org Wed, 19 Jan 2011 08:48:19 +0100 + velvet (1.0.15~nozlibcopy-2) unstable; urgency=low * Fix FTBFS with ld --as-needed (thanks

[med-svn] r5681 - trunk/packages/velvet/tags

2011-01-19 Thread Andreas Tille
Author: tille Date: 2011-01-19 08:00:40 + (Wed, 19 Jan 2011) New Revision: 5681 Added: trunk/packages/velvet/tags/1.0.18~nozlibcopy-1/ Log: Tagged 1.0.18~nozlibcopy-1 ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org

[med-svn] r5682 - in trunk/packages/biofox: . trunk/debian

2011-01-19 Thread Andreas Tille
) @@ -1,10 +1,22 @@ -biofox (1.1.5-2) UNRELEASED; urgency=low +biofox (1.6-1) unstable; urgency=low + [Charles Plessy] * debian/control: - Depend on xulrunner, and recommend iceweasel | iceape-browser. - -- Charles Plessy ple...@debian.org Mon, 30 Mar 2009 13:03:18 +0900 + [Andreas Tille

[med-svn] r5683 - trunk/packages/biofox/tags

2011-01-19 Thread Andreas Tille
Author: tille Date: 2011-01-19 10:13:59 + (Wed, 19 Jan 2011) New Revision: 5683 Added: trunk/packages/biofox/tags/1.6-1/ Log: Tagged 1.6-1 ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org

[med-svn] r5690 - trunk/packages/coils/trunk/debian

2011-01-24 Thread Andreas Tille
(2002-2) unstable; urgency=low - [Andreas Tille] * debian/control: - Team maintained in Debian Med team and added myself to uploaders - Removed '[biology]' from short description because we agreed not to use this any more - Fixed typo in Vcs-Browser field -- Standards

[med-svn] r5691 - trunk/packages/coils/tags

2011-01-24 Thread Andreas Tille
Author: tille Date: 2011-01-24 13:40:39 + (Mon, 24 Jan 2011) New Revision: 5691 Added: trunk/packages/coils/tags/2002-2/ Log: Tagged 2002-2 ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org

[med-svn] r5692 - in trunk/packages/R/r-other-mott-happy/trunk/debian: . source

2011-01-24 Thread Andreas Tille
: 3.9.1 (no changes needed) + * debhelper 7 + * Added watch file + * Source Format 3.0 (quilt) + + -- Andreas Tille ti...@debian.org Mon, 24 Jan 2011 14:52:31 +0100 + +r-other-mott-happy (2.2.hbrem~beta-2) UNRELEASED; urgency=low + * patch to happyplot -- Steffen Moeller moel...@debian.org Wed

[med-svn] r5693 - trunk/packages/R/r-other-mott-happy/trunk/debian

2011-01-24 Thread Andreas Tille
Uploaders: Steffen Moeller moel...@debian.org, Andreas Tille ti...@debian.org -Build-Depends: debhelper (= 7), cdbs, r-base-dev, r-cran-g.data, r-cran-multicore +Build-Depends: debhelper (= 7), cdbs, r-base-dev, r-cran-g.data, r-cran-multicore, r-cran-mass Standards-Version: 3.9.1 Homepage: http

[med-svn] r5694 - in trunk/packages/seqan/trunk/debian: . source

2011-01-24 Thread Andreas Tille
informations in ‘debian/upstream-metadata.yaml’. - -- Charles Plessy ple...@debian.org Thu, 21 Jan 2010 13:16:06 +0900 + [ Andreas Tille ] + * debian/control +- added myself to uploaders +- Standards-Version: 3.9.1 (no changes needed) +- debhelper 7 + * debian/watch: Allso catch RC candidates

[med-svn] r5695 - in trunk/packages/mcl/trunk/debian: . patches source

2011-01-24 Thread Andreas Tille
packages to get the same effect as the patch but +there is no need to change the patch for new versions + + -- Andreas Tille ti...@debian.org Mon, 24 Jan 2011 15:58:07 +0100 + mcl (1:10-148-1) unstable; urgency=low * New upstream release Modified: trunk/packages/mcl/trunk/debian/control

[med-svn] r5697 - in trunk/packages/R/r-cran-genetics/trunk/debian: . source

2011-01-24 Thread Andreas Tille
: 3.0 (quilt) + * debian/rules: No executable flag for PDF files + + -- Andreas Tille ti...@debian.org Mon, 24 Jan 2011 17:08:21 +0100 + r-cran-genetics (1.3.4-1) unstable; urgency=low [ Charles Plessy ] Modified: trunk/packages/R/r-cran-genetics/trunk/debian/control

[med-svn] r5698 - trunk/packages/R/r-cran-genetics/tags

2011-01-24 Thread Andreas Tille
Author: tille Date: 2011-01-24 16:52:13 + (Mon, 24 Jan 2011) New Revision: 5698 Added: trunk/packages/R/r-cran-genetics/tags/1.3.5-1/ Log: Tagged 1.3.5-1 ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org

[med-svn] r5699 - trunk/packages/elastix/trunk/debian

2011-01-24 Thread Andreas Tille
+ + * Fix name of Debian Med team (without '-') + + -- Andreas Tille ti...@debian.org Mon, 24 Jan 2011 17:56:46 +0100 + elastix (4.4-1) experimental; urgency=low * New package. Closes: #607030. Modified: trunk/packages/elastix/trunk/debian/control

[med-svn] r5701 - trunk/packages/R/r-other-mott-happy/branch-2.1/debian

2011-01-25 Thread Andreas Tille
- * Documented informations in ‘debian/upstream-metadata.yaml’. + [Charles Plessy] + * Documented information in ‘debian/upstream-metadata.yaml’. * Removed mention of the bibliographic reference in ‘debian/control’. - -- Charles Plessy ple...@debian.org Sun, 03 Jan 2010 23:24:11 +0900 + [Andreas Tille

[med-svn] r5702 - trunk/packages/R/r-other-mott-happy/branch-2.1/debian

2011-01-25 Thread Andreas Tille
Moeller] +FIXME + * debian/README.Debian + please comment here - it seems to contradict what +you said on the mailing list, at least I [Andreas Tille] reverted +the change in debian/control which is identical to 2.1-5 version +/FIXME + + [Andreas Tille] + * New upstream

[med-svn] r5703 - trunk/packages/mcl/tags

2011-01-25 Thread Andreas Tille
Author: tille Date: 2011-01-25 11:54:49 + (Tue, 25 Jan 2011) New Revision: 5703 Added: trunk/packages/mcl/tags/1:10-201-21/ Log: Tagged 10-201-21 ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org

[med-svn] r5704 - in trunk/packages/gff2aplot: . trunk/debian trunk/debian/patches trunk/debian/source

2011-01-25 Thread Andreas Tille
: rewritten to use dh + * debian/patches: use quilt + * debian/patches/01-makefile.diff: Removed because unneeded +with current packaging + * debian/{examples,install,manpages}: added + + -- Andreas Tille ti...@debian.org Tue, 25 Jan 2011 13:32:41 +0100 + gff2aplot (2.0-5) unstable; urgency

[med-svn] r5705 - trunk/packages/gff2aplot/tags

2011-01-25 Thread Andreas Tille
Author: tille Date: 2011-01-25 13:19:03 + (Tue, 25 Jan 2011) New Revision: 5705 Added: trunk/packages/gff2aplot/tags/2.0-6/ Log: Tagged 2.0-6 ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org

[med-svn] r5706 - in trunk/packages/imagej/trunk/debian: . patches

2011-01-25 Thread Andreas Tille
version rather +than currently packaged upstream tarball + * debian/rules: dh $@ --with javahelper + * debian/control: Build-Depends: javahelper + + -- Andreas Tille ti...@debian.org Tue, 25 Jan 2011 17:07:07 +0100 + imagej (1.44i-1) unstable; urgency=low * Team upload. Modified: trunk

[med-svn] r5707 - trunk/packages/imagej/tags

2011-01-25 Thread Andreas Tille
Author: tille Date: 2011-01-25 16:34:07 + (Tue, 25 Jan 2011) New Revision: 5707 Added: trunk/packages/imagej/tags/1.44n-1/ Log: Tagged 1.44n-1 ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org

[med-svn] r5708 - trunk/packages/imagej/tags

2011-01-25 Thread Andreas Tille
Author: tille Date: 2011-01-25 16:35:05 + (Tue, 25 Jan 2011) New Revision: 5708 Removed: trunk/packages/imagej/tags/1.41n-1/ trunk/packages/imagej/tags/1.43b-1/ trunk/packages/imagej/tags/1.43e-1/ trunk/packages/imagej/tags/1.43g-1/ trunk/packages/imagej/tags/1.43k-1/

[med-svn] r5709 - trunk/packages/R/r-cran-randomforest/trunk/debian

2011-01-26 Thread Andreas Tille
+ + * New upstream version + + -- Andreas Tille ti...@debian.org Wed, 26 Jan 2011 08:58:05 +0100 + r-cran-randomforest (4.5-36-1) unstable; urgency=low * New upstream version ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org

[med-svn] r5710 - trunk/packages/R/r-cran-randomforest/tags

2011-01-26 Thread Andreas Tille
Author: tille Date: 2011-01-26 08:16:23 + (Wed, 26 Jan 2011) New Revision: 5710 Added: trunk/packages/R/r-cran-randomforest/tags/4.6-2-1/ Removed: trunk/packages/R/r-cran-randomforest/tags/4.5-30-1/ trunk/packages/R/r-cran-randomforest/tags/4.5-33-1/ Log: Tagged 4.6-2-1

[med-svn] r5711 - trunk/packages/R/r-cran-qtl/trunk/debian

2011-01-26 Thread Andreas Tille
=== --- trunk/packages/R/r-cran-qtl/trunk/debian/changelog 2011-01-26 08:16:23 UTC (rev 5710) +++ trunk/packages/R/r-cran-qtl/trunk/debian/changelog 2011-01-26 09:13:16 UTC (rev 5711) @@ -1,3 +1,9 @@ +qtl (1.19-20-1) unstable; urgency=low + + * New upstream version + + -- Andreas Tille ti

[med-svn] r5712 - trunk/packages/R/r-cran-qtl/tags

2011-01-26 Thread Andreas Tille
Author: tille Date: 2011-01-26 09:15:44 + (Wed, 26 Jan 2011) New Revision: 5712 Added: trunk/packages/R/r-cran-qtl/tags/1.19-20-1/ Removed: trunk/packages/R/r-cran-qtl/tags/1.14-2-1/ trunk/packages/R/r-cran-qtl/tags/1.16-6-1/ Log: Tagged 1.19-20-1

[med-svn] r5713 - in trunk/packages/theseus/trunk/debian: . patches

2011-01-26 Thread Andreas Tille
: + Replaced by sed script in debian/rules which works (hopefully) + for future versions as well without manually changing the patch +- use_muscle_instead_of_clustalw.patch: + Removed because clustalw is no in main and we do not need + to actively replace it by muscle + + -- Andreas Tille

[med-svn] r5714 - in trunk/packages/theseus/trunk/debian: . patches

2011-01-27 Thread Andreas Tille
was applied upstream + + Other purpose was to enable liblapack (patch by Morten +Kjeldgaard) which was discussed with upstream and seems to +cause problems. So it was deactivated for now and might be +tested later for enabling higher performance if needed. -- Andreas Tille ti

[med-svn] r5715 - trunk/packages/theseus/tags

2011-01-27 Thread Andreas Tille
Author: tille Date: 2011-01-27 10:04:51 + (Thu, 27 Jan 2011) New Revision: 5715 Added: trunk/packages/theseus/tags/1.6.1-1/ Log: Tagged 1.6.1-1 ___ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org

[med-svn] r5729 - in trunk/packages/meme/trunk/debian: . glam2_manpages patches source

2011-01-28 Thread Andreas Tille
) +++ trunk/packages/meme/trunk/debian/changelog 2011-01-28 17:42:48 UTC (rev 5729) @@ -1,6 +1,6 @@ -meme (3.0.13-1) unstable; urgency=low +meme (4.5.0-1) unstable; urgency=low * Initial Release. - -- Steffen Moeller moel...@pzr.uni-rostock.de Thu, 20 Jan 2005 02:36:49 +0100 + -- Andreas Tille

[med-svn] r5736 - trunk/packages/bowtie/trunk/debian

2011-01-29 Thread Andreas Tille
yask.gupt...@gmail.com, + Andreas TIlle ti...@debian.org +Build-Depends: debhelper (= 7.1) Standards-Version: 3.9.1 Homepage: http://bowtie-bio.sourceforge.net/ Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/bowtie/trunk Modified: trunk/packages/bowtie/trunk/debian/watch

[med-svn] r5737 - trunk/packages/bowtie/trunk/debian

2011-01-29 Thread Andreas Tille
Author: tille Date: 2011-01-29 11:24:31 + (Sat, 29 Jan 2011) New Revision: 5737 Added: trunk/packages/bowtie/trunk/debian/get-orig-source Modified: trunk/packages/bowtie/trunk/debian/rules Log: Added get-orig-source Added: trunk/packages/bowtie/trunk/debian/get-orig-source

[med-svn] r5745 - trunk/packages/bowtie/trunk/debian

2011-01-29 Thread Andreas Tille
yask.gupt...@gmail.com, - Andreas TIlle ti...@debian.org + Andreas Tille ti...@debian.org Build-Depends: debhelper (= 7.1) Standards-Version: 3.9.1 Homepage: http://bowtie-bio.sourceforge.net/ @@ -15,6 +15,7 @@ Package: bowtie Architecture: any Depends: ${shlibs:Depends}, ${misc:Depends} +Suggests

[med-svn] r5747 - trunk/packages/bowtie/trunk/debian

2011-01-29 Thread Andreas Tille
Author: tille Date: 2011-01-29 16:32:01 + (Sat, 29 Jan 2011) New Revision: 5747 Added: trunk/packages/bowtie/trunk/debian/bowtie.docs trunk/packages/bowtie/trunk/debian/bowtie.links trunk/packages/bowtie/trunk/debian/bowtie.manpages Removed: trunk/packages/bowtie/trunk/debian/docs

[med-svn] r5764 - trunk/packages/vienna-rna/trunk/debian/source

2011-01-29 Thread Andreas Tille
Author: tille Date: 2011-01-29 20:32:16 + (Sat, 29 Jan 2011) New Revision: 5764 Added: trunk/packages/vienna-rna/trunk/debian/source/format Log: Add format which seems to be forgotten in the commit Added: trunk/packages/vienna-rna/trunk/debian/source/format

[med-svn] r5768 - trunk/packages/wgs-assembler/trunk/debian

2011-01-29 Thread Andreas Tille
Author: tille Date: 2011-01-29 20:46:56 + (Sat, 29 Jan 2011) New Revision: 5768 Removed: trunk/packages/wgs-assembler/trunk/debian/wgs-assembler/ Log: Remove remainings from failed build ___ debian-med-commit mailing list

[med-svn] r5769 - trunk/packages/wgs-assembler/trunk/debian

2011-01-29 Thread Andreas Tille
Author: tille Date: 2011-01-29 20:48:07 + (Sat, 29 Jan 2011) New Revision: 5769 Removed: trunk/packages/wgs-assembler/trunk/debian/emacsen-install.ex trunk/packages/wgs-assembler/trunk/debian/emacsen-remove.ex trunk/packages/wgs-assembler/trunk/debian/emacsen-startup.ex

[med-svn] r5772 - trunk/packages/ensembl/ensembl/57/debian

2011-01-29 Thread Andreas Tille
Author: tille Date: 2011-01-29 20:59:15 + (Sat, 29 Jan 2011) New Revision: 5772 Modified: trunk/packages/ensembl/ensembl/57/debian/watch Log: Use passive option for ftp server which increases chances to really get the package Modified: trunk/packages/ensembl/ensembl/57/debian/watch

[med-svn] r5773 - trunk/packages/ensembl/ensembl/57/debian

2011-01-29 Thread Andreas Tille
Author: tille Date: 2011-01-29 21:03:19 + (Sat, 29 Jan 2011) New Revision: 5773 Modified: trunk/packages/ensembl/ensembl/57/debian/prepare_ensembl_source_packages.sh Log: Make sure MD5sum of orig.tar.gz tarballs will remain the same for different checkouts Modified:

[med-svn] r5774 - trunk/packages/ensembl/ensembl/57/debian

2011-01-29 Thread Andreas Tille
Author: tille Date: 2011-01-29 21:05:42 + (Sat, 29 Jan 2011) New Revision: 5774 Modified: trunk/packages/ensembl/ensembl/57/debian/rules Log: Provide get-orig-source target Modified: trunk/packages/ensembl/ensembl/57/debian/rules

[med-svn] r5782 - in trunk/packages/ensembl/ensembl/57/debian: . po

2011-01-29 Thread Andreas Tille
Author: tille Date: 2011-01-29 21:57:35 + (Sat, 29 Jan 2011) New Revision: 5782 Added: trunk/packages/ensembl/ensembl/57/debian/po/ trunk/packages/ensembl/ensembl/57/debian/po/POTFILES.in trunk/packages/ensembl/ensembl/57/debian/po/templates.pot Modified:

[med-svn] r5783 - trunk/packages/ensembl/ensembl/57/debian

2011-01-29 Thread Andreas Tille
Author: tille Date: 2011-01-29 22:05:00 + (Sat, 29 Jan 2011) New Revision: 5783 Modified: trunk/packages/ensembl/ensembl/57/debian/rules Log: Add dh_installdebconf to debian/roles which finally does the trick to install templates and config into the package Modified:

[med-svn] r5789 - trunk/packages/velvet/trunk/debian

2011-01-29 Thread Andreas Tille
Author: tille Date: 2011-01-29 22:52:19 + (Sat, 29 Jan 2011) New Revision: 5789 Modified: trunk/packages/velvet/trunk/debian/get-orig-source Log: Typo Modified: trunk/packages/velvet/trunk/debian/get-orig-source === ---

[med-svn] r5790 - trunk/packages/bowtie/trunk/debian

2011-01-29 Thread Andreas Tille
Author: tille Date: 2011-01-29 22:54:29 + (Sat, 29 Jan 2011) New Revision: 5790 Modified: trunk/packages/bowtie/trunk/debian/get-orig-source Log: Fix comment Modified: trunk/packages/bowtie/trunk/debian/get-orig-source ===

[med-svn] r5791 - trunk/packages/mothur/trunk/debian

2011-01-29 Thread Andreas Tille
Author: tille Date: 2011-01-29 23:16:42 + (Sat, 29 Jan 2011) New Revision: 5791 Added: trunk/packages/mothur/trunk/debian/get-orig-source trunk/packages/mothur/trunk/debian/watch Modified: trunk/packages/mothur/trunk/debian/rules Log: Provide watch file; rewrite get-orig-source based

[med-svn] r5795 - in trunk/packages/mothur/trunk/debian: . patches

2011-01-29 Thread Andreas Tille
...@evolbio.mpg.de Fri, 02 Jul 2010 12:27:50 +0200 + -- Andreas Tille ti...@debian.org Sun, 30 Jan 2011 00:21:42 +0100 Modified: trunk/packages/mothur/trunk/debian/control === --- trunk/packages/mothur/trunk/debian/control 2011-01-29 23:28:04

[med-svn] r5801 - trunk/packages/mothur/trunk/debian

2011-01-30 Thread Andreas Tille
Author: tille Date: 2011-01-30 10:00:53 + (Sun, 30 Jan 2011) New Revision: 5801 Added: trunk/packages/mothur/trunk/debian/upstream-metadata.yaml Log: Added upstream-metadata.yaml Added: trunk/packages/mothur/trunk/debian/upstream-metadata.yaml

[med-svn] r5810 - trunk/packages/mothur/trunk/debian

2011-01-30 Thread Andreas Tille
:50 +0200 + http://www.mothur.org/wiki/Mothur_manual + + -- Andreas Tille ti...@debian.org Sun, 30 Jan 2011 00:21:42 +0100 Added: trunk/packages/mothur/trunk/debian/README.Source === --- trunk/packages/mothur/trunk/debian

[med-svn] r5811 - trunk/packages/wgs-assembler/trunk/debian

2011-01-30 Thread Andreas Tille
Spooner w...@eaglegenomics.com +Maintainer: Debian Med Packaging Team debian-med-packag...@lists.alioth.debian.org +Uploaders: William Spooner w...@eaglegenomics.com, + Andreas Tille ti...@debian.org Build-Depends: debhelper (= 7.0.50~), libbz2-dev Standards-Version: 3.9.1 -Homepage: http

[med-svn] r5813 - trunk/packages/mothur/trunk/debian/patches

2011-01-30 Thread Andreas Tille
) @@ -0,0 +1,15 @@ +Author: Andreas Tille ti...@debian.org +Date: 2011-01-30 +Dscription: There is no need to link against lncurses because its symbols are not used +--- mothur-1.14.0.orig/makefile mothur-1.14.0/makefile +@@ -54,8 +54,7 @@ + ifeq ($(strip $(USEREADLINE)),yes) + CXXFLAGS

[med-svn] r5816 - trunk/packages/wgs-assembler/trunk/debian

2011-01-30 Thread Andreas Tille
Author: tille Date: 2011-01-30 12:04:40 + (Sun, 30 Jan 2011) New Revision: 5816 Added: trunk/packages/wgs-assembler/trunk/debian/watch Log: Added watch file Added: trunk/packages/wgs-assembler/trunk/debian/watch === ---

[med-svn] r5817 - trunk/packages/wgs-assembler/trunk/debian

2011-01-30 Thread Andreas Tille
or directories which have a -# different copyright/license attached and list them here. +Files: debian/* +Copyright: © 2011 William Spooner w...@eaglegenomics.com, + Andreas Tille ti...@debian.org, Modified: trunk/packages/wgs-assembler/trunk/debian/docs

[med-svn] r5820 - trunk/packages/wgs-assembler/trunk/debian

2011-01-30 Thread Andreas Tille
Author: tille Date: 2011-01-30 13:25:14 + (Sun, 30 Jan 2011) New Revision: 5820 Modified: trunk/packages/wgs-assembler/trunk/debian/copyright Log: Fixed copyright information, added upstream-metadata.yaml Modified: trunk/packages/wgs-assembler/trunk/debian/copyright

[med-svn] r5821 - trunk/packages/vienna-rna/trunk/debian/patches

2011-01-30 Thread Andreas Tille
Author: tille Date: 2011-01-30 13:41:42 + (Sun, 30 Jan 2011) New Revision: 5821 Removed: trunk/packages/vienna-rna/trunk/debian/patches/cleanup_lintian_warnings.patch Modified: trunk/packages/vienna-rna/trunk/debian/patches/series Log: Remove not applicable patch Deleted:

[med-svn] r5822 - trunk/packages/vienna-rna/trunk/debian

2011-01-30 Thread Andreas Tille
Author: tille Date: 2011-01-30 13:59:12 + (Sun, 30 Jan 2011) New Revision: 5822 Modified: trunk/packages/vienna-rna/trunk/debian/control trunk/packages/vienna-rna/trunk/debian/rules Log: Some minor changes to fix lintian warnings Modified:

[med-svn] r5824 - trunk/packages/bowtie/trunk/debian

2011-01-30 Thread Andreas Tille
Author: tille Date: 2011-01-30 14:26:33 + (Sun, 30 Jan 2011) New Revision: 5824 Added: trunk/packages/bowtie/trunk/debian/doc-base Modified: trunk/packages/bowtie/trunk/debian/bowtie-build.1 trunk/packages/bowtie/trunk/debian/control Log: added doc-base control file Modified:

[med-svn] r5826 - trunk/packages/bowtie/trunk/debian

2011-01-30 Thread Andreas Tille
is: - -Copyright (C) 2010 Steffen Moeller moel...@debian.org - -and is licensed under the same license. - +Files: debian/* +Copyright: © 2010 Files: * +Copyright: © 2011 Steffen Moeller moel...@debian.org, + Yask Gupta yask.gupt...@gmail.com + © 2011 Andreas Tille ti...@debian.org

[med-svn] r5834 - trunk/packages/tm-align/trunk/debian

2011-01-30 Thread Andreas Tille
...@gmail.com Wed, 06 Feb 2008 13:11:58 +0100 - -tm-align (20050601-1) unstable; urgency=low - * Initial release (Closes: #447505) - -- Steffen Moeller moel...@debian.org Sun, 21 Oct 2007 17:11:53 +0200 - + -- Andreas Tille ti...@debian.org Sun, 30 Jan 2011 22:49:21 +0100 Modified: trunk

[med-svn] r5835 - trunk/packages/tm-align/trunk/debian

2011-01-30 Thread Andreas Tille
) +++ trunk/packages/tm-align/trunk/debian/control2011-01-30 21:59:26 UTC (rev 5835) @@ -6,7 +6,7 @@ Uploaders: Steffen Moeller moel...@debian.org, Tim Booth tbo...@ceh.ac.uk, Andreas Tille ti...@debian.org -Build-Depends: debhelper (= 7), gfortran +Build-Depends: debhelper (= 7.1

[med-svn] r5836 - trunk/packages/tm-align/trunk/debian

2011-01-30 Thread Andreas Tille
...@debian.org and -is licensed under the GPL, see `/usr/share/common-licenses/GPL'. - +Files: debian/* +Copyright: © 2007 Steffen Moeller moel...@debian.org +Copyright: © 2011 Tim Booth tbo...@ceh.ac.uk, + Andreas Tille ti...@debian.org +License: The Debian packaging is licensed under

[med-svn] r5837 - trunk/packages/tm-align/trunk/debian

2011-01-30 Thread Andreas Tille
Author: tille Date: 2011-01-30 22:15:47 + (Sun, 30 Jan 2011) New Revision: 5837 Removed: trunk/packages/tm-align/trunk/debian/README.Debian Log: Remove outdated information Deleted: trunk/packages/tm-align/trunk/debian/README.Debian

[med-svn] r5838 - trunk/packages/vienna-rna/trunk/debian

2011-01-30 Thread Andreas Tille
by Craig Small in version 0.37 of dh-make. -# -# Modified to make a template file for a multi-binary package with separated -# build-arch and build-indep targets by Bill Allombert 2001 +# debian/rules for vienna-rna +# Andreas Tille ti...@debian.org +# GPL # Uncomment this to turn on verbose

[med-svn] r5839 - in trunk/packages/vienna-rna/trunk/debian: . patches

2011-01-31 Thread Andreas Tille
/do_not_configure_g2-0.70.patch (rev 0) +++ trunk/packages/vienna-rna/trunk/debian/patches/do_not_configure_g2-0.70.patch 2011-01-31 19:52:50 UTC (rev 5839) @@ -0,0 +1,45 @@ +Author: Andreas Tille ti...@debian.org +Date: 2011-01-31 +Description: The g2 library

[med-svn] r5840 - trunk/packages/vienna-rna/trunk/debian

2011-01-31 Thread Andreas Tille
Author: tille Date: 2011-01-31 20:22:11 + (Mon, 31 Jan 2011) New Revision: 5840 Modified: trunk/packages/vienna-rna/trunk/debian/control Log: Added Build-Depends for creating pdf from texinfo Modified: trunk/packages/vienna-rna/trunk/debian/control

[med-svn] r5841 - in trunk/packages/vienna-rna/trunk/debian: . patches

2011-01-31 Thread Andreas Tille
in the source of +RNAforester is not used but the package is linked against the +Debian packaged version + + -- Andreas Tille ti...@debian.org Tue, 01 Feb 2011 08:31:47 +0100 Modified: trunk/packages/vienna-rna/trunk/debian/control

[med-svn] r5843 - trunk/packages/vienna-rna/trunk/debian

2011-02-01 Thread Andreas Tille
Author: tille Date: 2011-02-01 18:48:37 + (Tue, 01 Feb 2011) New Revision: 5843 Added: trunk/packages/vienna-rna/trunk/debian/b2ct.1 Modified: trunk/packages/vienna-rna/trunk/debian/control trunk/packages/vienna-rna/trunk/debian/rules

[med-svn] r5845 - trunk/packages/vienna-rna/trunk/debian/patches

2011-02-01 Thread Andreas Tille
Author: tille Date: 2011-02-01 19:39:33 + (Tue, 01 Feb 2011) New Revision: 5845 Modified: trunk/packages/vienna-rna/trunk/debian/patches/fix_RNAlib_info.patch trunk/packages/vienna-rna/trunk/debian/patches/fix_manual_pages.patch Log: Fix texinfo properly Modified:

[med-svn] r5846 - trunk/packages/vienna-rna/trunk/debian

2011-02-01 Thread Andreas Tille
Author: tille Date: 2011-02-01 21:16:59 + (Tue, 01 Feb 2011) New Revision: 5846 Modified: trunk/packages/vienna-rna/trunk/debian/rules Log: Finally get valid manpages out of perldoc Modified: trunk/packages/vienna-rna/trunk/debian/rules

[med-svn] r5847 - trunk/packages/tm-align/trunk/debian

2011-02-01 Thread Andreas Tille
Author: tille Date: 2011-02-01 21:34:13 + (Tue, 01 Feb 2011) New Revision: 5847 Added: trunk/packages/tm-align/trunk/debian/watch Modified: trunk/packages/tm-align/trunk/debian/get-orig-source Log: Added watch file, rewrote get-orig-source based on changed upstream release policy

[med-svn] r5849 - trunk/packages/tm-align/trunk/debian

2011-02-01 Thread Andreas Tille
Author: tille Date: 2011-02-01 21:42:16 + (Tue, 01 Feb 2011) New Revision: 5849 Modified: trunk/packages/tm-align/trunk/debian/install trunk/packages/tm-align/trunk/debian/manpages trunk/packages/tm-align/trunk/debian/rules Log: Include TMscore into packaging - needs to be added to

[med-svn] r5851 - trunk/packages/mothur/trunk/debian

2011-02-02 Thread Andreas Tille
OF MISSING LICENSE STATEMENT - * Initial release (Closes: #589675) - -- Andreas Tille ti...@debian.org Sun, 30 Jan 2011 00:21:42 +0100 + -- Andreas Tille ti...@debian.org Wed, 02 Feb 2011 08:59:45 +0100 Modified: trunk/packages/mothur/trunk/debian/copyright

[med-svn] r5852 - trunk/packages/mothur/trunk/debian

2011-02-02 Thread Andreas Tille
Author: tille Date: 2011-02-02 08:20:04 + (Wed, 02 Feb 2011) New Revision: 5852 Modified: trunk/packages/mothur/trunk/debian/changelog Log: Re-added Tim's changelog entry for lucid (even if I do not know, whether this is needed) Modified: trunk/packages/mothur/trunk/debian/changelog

[med-svn] r5856 - in trunk/packages/bowtie/trunk/debian: . patches

2011-02-02 Thread Andreas Tille
/changelog2011-02-02 12:16:56 UTC (rev 5855) +++ trunk/packages/bowtie/trunk/debian/changelog2011-02-02 13:02:04 UTC (rev 5856) @@ -2,4 +2,4 @@ * Initial release (Closes: #604940) - -- Steffen Moeller moel...@debian.org Thu, 25 Nov 2010 17:04:39 +0100 + -- Andreas Tille ti

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