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tille pushed a commit to branch master
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commit f8273ac8899a38b2e21027d1e43b9ae4f4b99530
Author: Andreas Tille <ti...@debian.org>
Date: Fri Oct 14 08:00:56 2016 +0200
python-hyphy is now distributed in separate source archive so removing it
from this package
---
debian/README.Debian | 8 ------
debian/changelog | 2 ++
debian/control | 67 -------------------------------------------
debian/python-hyphy.links | 2 --
debian/python3-hyphy.examples | 1 -
debian/python3-hyphy.links | 2 --
debian/rules | 2 +-
7 files changed, 3 insertions(+), 81 deletions(-)
diff --git a/debian/README.Debian b/debian/README.Debian
index 136d4eb..ff6f502 100644
--- a/debian/README.Debian
+++ b/debian/README.Debian
@@ -11,14 +11,6 @@ you can use
hyphy-mp - executable (hyphymp) using pthreads to do multiprocessing
hyphy-mpi - executable (hyphympi) using MPI to do multiprocessing
-Moreover the Python modules are packaged for Python and Python3.
-An example for the usage is provided in
-
- /usr/share/doc/python[3]-hyphy/examples/Python
-
-Currently the R module is not build since there are some issues
-with the build instructions. This will be clarified with upstream.
-
For more information see
http://www.hyphy.org/docs/HyphyDocs.pdf
diff --git a/debian/changelog b/debian/changelog
index c8259f8..98cd898 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -2,6 +2,8 @@ hyphy (2.2.7+dfsg-1) UNRELEASED; urgency=medium
* New upstream version
* Use xz compression in d/watch
+ * python-hyphy is now distributed in separate source archive so
+ removing it from this package
-- Andreas Tille <ti...@debian.org> Tue, 16 Aug 2016 09:22:40 +0200
diff --git a/debian/control b/debian/control
index 78ab984..603d922 100644
--- a/debian/control
+++ b/debian/control
@@ -4,13 +4,9 @@ Uploaders: Andreas Tille <ti...@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper (>= 9),
- dh-python,
cmake (>= 3.0),
- python-dev,
- python3-all-dev,
mpi-default-dev,
libcurl4-gnutls-dev | libcurl4-dev,
- python,
libgtk2.0-dev,
libssl-dev,
libsqlite3-dev
@@ -18,8 +14,6 @@ Standards-Version: 3.9.8
Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/hyphy.git
Vcs-Git: https://anonscm.debian.org/git/debian-med/hyphy.git
Homepage: http://hyphy.org/
-X-Python-Version: >= 2.7
-X-Python3-Version: >= 3.4
Package: hyphygui
Architecture: any
@@ -92,64 +86,3 @@ Description: Hypothesis testing using Phylogenies (common
files)
.
This package provides files that are common to all binary versions.
-Package: python-hyphy
-Architecture: any
-Section: python
-Depends: ${shlibs:Depends},
- ${misc:Depends},
- ${python:Depends},
- hyphy-common
-Description: Hypothesis testing using Phylogenies (Python 2 module)
- HyPhy is an open-source software package for the analysis of genetic
- sequences using techniques in phylogenetics, molecular evolution, and
- machine learning. It features a complete graphical user interface (GUI)
- and a rich scripting language for limitless customization of analyses.
- Additionally, HyPhy features support for parallel computing environments
- (via message passing interface) and it can be compiled as a shared
- library and called from other programming environments such as Python or
- R. Continued development of HyPhy is currently supported in part by an
- NIGMS R01 award 1R01GM093939.
- .
- This package provides files the Python 2 module.
-
-Package: python3-hyphy
-Architecture: any
-Section: python
-Depends: ${shlibs:Depends},
- ${misc:Depends},
- ${python3:Depends},
- hyphy-common
-Description: Hypothesis testing using Phylogenies (Python 3 module)
- HyPhy is an open-source software package for the analysis of genetic
- sequences using techniques in phylogenetics, molecular evolution, and
- machine learning. It features a complete graphical user interface (GUI)
- and a rich scripting language for limitless customization of analyses.
- Additionally, HyPhy features support for parallel computing environments
- (via message passing interface) and it can be compiled as a shared
- library and called from other programming environments such as Python or
- R. Continued development of HyPhy is currently supported in part by an
- NIGMS R01 award 1R01GM093939.
- .
- This package provides files the Python 3 module.
-
-#Package: libhyphy
-#Architecture: any
-#Depends: ${shlibs:Depends},
-# ${misc:Depends}
-#Description: Hypothesis testing using Phylogenies (library)
-# HyPhy is an open-source software package for the analysis of genetic
-# sequences using techniques in phylogenetics, molecular evolution, and
-# machine learning. It features a complete graphical user interface (GUI)
-# and a rich scripting language for limitless customization of analyses.
-# Additionally, HyPhy features support for parallel computing environments
-# (via message passing interface) and it can be compiled as a shared
-# library and called from other programming environments such as Python or
-# R. Continued development of HyPhy is currently supported in part by an
-# NIGMS R01 award 1R01GM093939.
-# .
-# This package provides files that a dynamic library.
-# .
-# .
-# The usage is unclear currently and upstream was asked for
-# clarification
-#
diff --git a/debian/python-hyphy.links b/debian/python-hyphy.links
deleted file mode 100644
index 9d0a506..0000000
--- a/debian/python-hyphy.links
+++ /dev/null
@@ -1,2 +0,0 @@
-/usr/share/doc/hyphy-common/examples/HBL
/usr/share/doc/python-hyphy/examples/HBL
-
diff --git a/debian/python3-hyphy.examples b/debian/python3-hyphy.examples
deleted file mode 100644
index ae7360d..0000000
--- a/debian/python3-hyphy.examples
+++ /dev/null
@@ -1 +0,0 @@
-debian/Python
diff --git a/debian/python3-hyphy.links b/debian/python3-hyphy.links
deleted file mode 100644
index 52af957..0000000
--- a/debian/python3-hyphy.links
+++ /dev/null
@@ -1,2 +0,0 @@
-/usr/share/doc/hyphy-common/examples/HBL
/usr/share/doc/python3-hyphy/examples/HBL
-
diff --git a/debian/rules b/debian/rules
index cbe6515..508c2d8 100755
--- a/debian/rules
+++ b/debian/rules
@@ -11,7 +11,7 @@ PYVERS = $(shell pyversions -r)
PY3VERS = $(shell py3versions -r)
%:
- dh $@ --buildsystem=cmake --with python2,python3
+ dh $@ --buildsystem=cmake
override_dh_auto_clean:
dh_auto_clean
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