This is an automated email from the git hooks/post-receive script. afif pushed a commit to branch master in repository nanopolish.
commit 1b9384f5e36350e01d81b9965e812ae756f4788e Merge: 649786e 436609f Author: Afif Elghraoui <a...@debian.org> Date: Sun Feb 4 16:05:34 2018 -0500 Merge tag 'upstream/0.8.5' Upstream version 0.8.5 Makefile | 26 +- README.md | 11 +- docs/Makefile | 20 + docs/source/_static/nanopolish-workflow.png | Bin 0 -> 318184 bytes .../_static/quickstart_methylation_results.png | Bin 0 -> 50765 bytes docs/source/conf.py | 168 +++++++++ docs/source/debug.rst | 170 +++++++++ docs/source/index.rst | 30 ++ docs/source/installation.rst | 45 +++ docs/source/manual.rst | 413 +++++++++++++++++++++ docs/source/quickstart_call_methylation.rst | 125 +++++++ docs/source/quickstart_consensus.rst | 115 ++++++ docs/source/quickstart_eventalign.rst | 103 +++++ scripts/calculate_methylation_frequency.py | 11 +- scripts/extract_reads_aligned_to_region.py | 309 +++++++++++++++ scripts/nanopolish_merge.py | 17 +- src/alignment/nanopolish_alignment_db.cpp | 1 + src/alignment/nanopolish_eventalign.cpp | 134 ++----- src/common/nanopolish_bam_processor.cpp | 3 +- src/common/nanopolish_common.h | 2 +- src/main/nanopolish.cpp | 9 +- src/nanopolish_call_variants.cpp | 6 +- src/nanopolish_extract.cpp | 70 ++-- src/nanopolish_index.cpp | 18 +- src/nanopolish_raw_loader.cpp | 12 +- src/nanopolish_read_db.cpp | 19 +- src/nanopolish_squiggle_read.cpp | 46 ++- 27 files changed, 1703 insertions(+), 180 deletions(-) -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/nanopolish.git _______________________________________________ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit