This is an automated email from the git hooks/post-receive script. daube-guest pushed a change to branch master in repository python-cutadapt.
from a148fa4 upload upstream release 1.11 new 89cb1e6 New upstream version 1.12 new 0ba0917 Merge tag 'upstream/1.12' new 65b233e bump changelog new db0912d Refresh patches, add patch to fix setup.py encoding issue new 1f867cd Add myself to uploaders new ce0569f Close bug for new release in d/changelog The 6 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The revisions listed as "adds" were already present in the repository and have only been added to this reference. Summary of changes: CHANGES.rst | 11 ++ PKG-INFO | 45 ++++- README.rst | 2 +- bin/_preamble.py | 21 --- bin/cutadapt | 10 -- cutadapt.egg-info/PKG-INFO | 45 ++++- cutadapt.egg-info/SOURCES.txt | 8 +- cutadapt.egg-info/entry_points.txt | 3 + cutadapt.egg-info/requires.txt | 1 + cutadapt/_align.c | 36 ++-- cutadapt/_seqio.c | 2 +- cutadapt/_seqio.pyx | 2 +- cutadapt/_version.py | 4 +- cutadapt/adapters.py | 12 +- cutadapt/filters.py | 2 +- cutadapt/modifiers.py | 9 + cutadapt/scripts/cutadapt.py | 115 ++++++------- cutadapt/seqio.py | 4 +- cutadapt/xopen.py | 182 --------------------- debian/changelog | 6 + debian/control | 3 +- .../0002-Fix-encoding-issue-in-setup.py.patch | 23 +++ debian/patches/cython_version.patch | 15 +- debian/patches/series | 1 + doc/colorspace.rst | 26 ++- doc/guide.rst | 157 ++++++++++++------ doc/recipes.rst | 48 ++++-- setup.py | 7 +- tests/cut/shortened.fastq | 12 ++ tests/cut/{small.fasta => small-no-trim.fasta} | 4 +- tests/testmodifiers.py | 19 ++- tests/tests.py | 8 + tests/testxopen.py | 101 ------------ 33 files changed, 460 insertions(+), 484 deletions(-) delete mode 100644 bin/_preamble.py delete mode 100755 bin/cutadapt create mode 100644 cutadapt.egg-info/entry_points.txt create mode 100644 cutadapt.egg-info/requires.txt delete mode 100644 cutadapt/xopen.py create mode 100644 debian/patches/0002-Fix-encoding-issue-in-setup.py.patch create mode 100644 tests/cut/shortened.fastq copy tests/cut/{small.fasta => small-no-trim.fasta} (57%) delete mode 100644 tests/testxopen.py -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/python-cutadapt.git _______________________________________________ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit