This is an automated email from the git hooks/post-receive script. daube-guest pushed a change to branch upstream in repository python-cutadapt.
from 7782a43 Imported Upstream version 1.11 new 89cb1e6 New upstream version 1.12 The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The revisions listed as "adds" were already present in the repository and have only been added to this reference. Summary of changes: CHANGES.rst | 11 ++ PKG-INFO | 45 +++++- README.rst | 2 +- bin/_preamble.py | 21 --- bin/cutadapt | 10 -- cutadapt.egg-info/PKG-INFO | 45 +++++- cutadapt.egg-info/SOURCES.txt | 8 +- cutadapt.egg-info/entry_points.txt | 3 + cutadapt.egg-info/requires.txt | 1 + cutadapt/_align.c | 36 +++-- cutadapt/_seqio.c | 2 +- cutadapt/_seqio.pyx | 2 +- cutadapt/_version.py | 4 +- cutadapt/adapters.py | 12 +- cutadapt/filters.py | 2 +- cutadapt/modifiers.py | 9 ++ cutadapt/scripts/cutadapt.py | 115 ++++++++-------- cutadapt/seqio.py | 4 +- cutadapt/xopen.py | 182 ------------------------- doc/colorspace.rst | 26 +++- doc/guide.rst | 157 +++++++++++++-------- doc/recipes.rst | 48 +++++-- setup.py | 7 +- tests/cut/shortened.fastq | 12 ++ tests/cut/{small.fasta => small-no-trim.fasta} | 4 +- tests/testmodifiers.py | 19 ++- tests/tests.py | 8 ++ tests/testxopen.py | 101 -------------- 28 files changed, 418 insertions(+), 478 deletions(-) delete mode 100644 bin/_preamble.py delete mode 100755 bin/cutadapt create mode 100644 cutadapt.egg-info/entry_points.txt create mode 100644 cutadapt.egg-info/requires.txt delete mode 100644 cutadapt/xopen.py create mode 100644 tests/cut/shortened.fastq copy tests/cut/{small.fasta => small-no-trim.fasta} (57%) delete mode 100644 tests/testxopen.py -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/python-cutadapt.git _______________________________________________ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit