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commit f6e58cd21162e779362e80c4a03bce36bca1ba44 Author: Michael R. Crusoe <michael.cru...@gmail.com> Date: Sat Oct 15 04:55:46 2016 -0700 initial Debianization --- debian/changelog | 5 +++++ debian/compat | 1 + debian/control | 29 +++++++++++++++++++++++++++++ debian/copyright | 11 +++++++++++ debian/rules | 21 +++++++++++++++++++++ debian/source/format | 1 + debian/upstream/metadata | 12 ++++++++++++ debian/watch | 3 +++ 8 files changed, 83 insertions(+) diff --git a/debian/changelog b/debian/changelog new file mode 100644 index 0000000..ced574d --- /dev/null +++ b/debian/changelog @@ -0,0 +1,5 @@ +r-hms-dbmi-spp (1.14-1) UNRELEASED; urgency=medium + + * Initial release. (Closes: #XXXXXX) + + -- Michael R. Crusoe <michael.cru...@gmail.com> Sat, 15 Oct 2016 04:27:49 -0700 diff --git a/debian/compat b/debian/compat new file mode 100644 index 0000000..ec63514 --- /dev/null +++ b/debian/compat @@ -0,0 +1 @@ +9 diff --git a/debian/control b/debian/control new file mode 100644 index 0000000..c91ef30 --- /dev/null +++ b/debian/control @@ -0,0 +1,29 @@ +Source: r-hms-dbmi-spp +Section: science +Priority: optional +Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> +Uploaders: Michael R. Crusoe <michael.cru...@gmail.com> +Build-Depends: debhelper (>= 9), + cdbs, + r-base-dev, + r-cran-catools, + libboost-dev, + r-bioc-rsamtools +Standards-Version: 3.9.8 +Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/r-cran-spp.git +Vcs-Git: https://anonscm.debian.org/git/debian-med/r-cran-spp.git +Homepage: http://compbio.med.harvard.edu/Supplements/ChIP-seq/ + +Package: r-hms-dbmi-spp +Architecture: any +Depends: ${R:Depends}, + ${shlibs:Depends}, + ${misc:Depends}, + r-cran-catools, + r-bioc-rsamtools +Description: GNU R package for processing ChIP-seq & other functional sequencing data + A set of routines for reading short sequence alignments, calculating tag + density, estimates of statistically significant enrichment/depletion + along the chromosome, identifying point binding positions (peaks), and + characterizing saturation properties related to sequencing depth. + diff --git a/debian/copyright b/debian/copyright new file mode 100644 index 0000000..d991f5e --- /dev/null +++ b/debian/copyright @@ -0,0 +1,11 @@ +Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Upstream-Name: spp +Source: https://github.com/hms-dbmi/spp/releases + +Files: * +Copyright: © 20xx-20yy <upstream> +License: GPL-2 + +Files: debian/* +Copyright: © 2016 Michael R. Crusoe <michael.cru...@gmail.com> +License: GPL-2 diff --git a/debian/rules b/debian/rules new file mode 100755 index 0000000..803e2fe --- /dev/null +++ b/debian/rules @@ -0,0 +1,21 @@ +#!/usr/bin/make -f + +# DH_VERBOSE := 1 +export LC_ALL=C.UTF-8 +export CXXFLAGS=-std=c++98 + +debRreposname=hms-dbmi +include /usr/share/R/debian/r-cran.mk + +# some helpful variables - uncomment them if needed +# shamelessly stolen from http://jmtd.net/log/awk/ +#DEBVERS := $(shell dpkg-parsechangelog | awk '/^Version:/ {print $$2}') +#VERSION := $(shell echo '$(DEBVERS)' | sed -e 's/^[0-9]*://' -e 's/-.*//') +#DEBFLAVOR := $(shell dpkg-parsechangelog | awk '/^Distribution:/ {print $$2}') +#DEBPKGNAME := $(shell dpkg-parsechangelog | awk '/^Source:/ {print $$2}') +#DEBIAN_BRANCH := $(shell awk 'BEGIN{FS="[= ]+"} /debian-branch/ {print $$2}' debian/gbp.conf) +#GIT_TAG := $(subst ~,_,$(VERSION)) + +# for hardening you might like to uncomment this: +# export DEB_BUILD_MAINT_OPTIONS=hardening=+all + diff --git a/debian/source/format b/debian/source/format new file mode 100644 index 0000000..163aaf8 --- /dev/null +++ b/debian/source/format @@ -0,0 +1 @@ +3.0 (quilt) diff --git a/debian/upstream/metadata b/debian/upstream/metadata new file mode 100644 index 0000000..d8b5812 --- /dev/null +++ b/debian/upstream/metadata @@ -0,0 +1,12 @@ +Reference: + Author: + Title: + Journal: + Year: + Volume: + Number: + Pages: + DOI: + PMID: + URL: + eprint: diff --git a/debian/watch b/debian/watch new file mode 100644 index 0000000..1d40f89 --- /dev/null +++ b/debian/watch @@ -0,0 +1,3 @@ +version=3 + +https://github.com/hms-dbmi/spp/releases .*/archive/v?(\d[\d.-]+)\.(?:tar(?:\.gz|\.bz2)?|tgz) -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/r-hms-dbmi-spp.git _______________________________________________ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit