This is an automated email from the git hooks/post-receive script. afif pushed a commit to branch master in repository sniffles.
commit dd60865b46f2c4f7e4c72fcc57d621ed6d13def2 Author: Afif Elghraoui <a...@debian.org> Date: Mon Oct 17 01:31:00 2016 -0700 Update patches --- debian/patches/external-libs.patch | 4 ++-- debian/patches/no-extra-binary.patch | 11 ++++++----- 2 files changed, 8 insertions(+), 7 deletions(-) diff --git a/debian/patches/external-libs.patch b/debian/patches/external-libs.patch index 53ad912..ae856cb 100644 --- a/debian/patches/external-libs.patch +++ b/debian/patches/external-libs.patch @@ -24,7 +24,7 @@ Last-Update: 2016-06-18 include_directories (../lib/bamtools-2.3.0/src) include_directories(../lib/tclap-1.2.1/include) -@@ -28,8 +30,8 @@ +@@ -29,8 +31,8 @@ ) #target_link_libraries(ngm-core pthread) @@ -34,4 +34,4 @@ Last-Update: 2016-06-18 +TARGET_LINK_LIBRARIES(sniffles z) add_executable(sniffles-debug - Alignment.cpp + tree/Breakpoint_Tree.cpp diff --git a/debian/patches/no-extra-binary.patch b/debian/patches/no-extra-binary.patch index abadd97..0c1f312 100644 --- a/debian/patches/no-extra-binary.patch +++ b/debian/patches/no-extra-binary.patch @@ -6,14 +6,15 @@ Forwarded: not-needed Last-Update: 2016-06-18 --- sniffles.orig/src/CMakeLists.txt +++ sniffles/src/CMakeLists.txt -@@ -33,30 +33,3 @@ +@@ -34,31 +34,3 @@ TARGET_LINK_LIBRARIES(sniffles bamtools) TARGET_LINK_LIBRARIES(sniffles z) -add_executable(sniffles-debug +- tree/Breakpoint_Tree.cpp +- Genotyper/Genotyper.cpp - Alignment.cpp - BamParser.cpp -- Parser.cpp - Sniffles.cpp - Ignore_Regions.cpp - tree/Intervall_bed.cpp @@ -23,12 +24,12 @@ Last-Update: 2016-06-18 - realign/SWCPU.cpp - realign/Realign.cpp - print/VCFPrinter.cpp -- print/BedePrinter.cpp -- print/MariaPrinter.cpp +- print/BedpePrinter.cpp - print/IPrinter.cpp -- phasing/PhaserSV.cpp - tree/BinTree.cpp - print/NGMPrinter.cpp +- plane-sweep/PlaneSweep_slim.cpp +- cluster/Cluster_SVs.cpp - ) - -SET_TARGET_PROPERTIES(sniffles-debug PROPERTIES COMPILE_FLAGS "-g3 -O0") -- Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/sniffles.git _______________________________________________ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit