Author: satta
Date: 2016-09-17 14:44:37 +0000 (Sat, 17 Sep 2016)
New Revision: 22819
Added:
trunk/packages/arb/tags/6.0.3-2/
trunk/packages/arb/tags/6.0.3-2/debian/changelog
trunk/packages/arb/tags/6.0.3-2/debian/control
trunk/packages/arb/tags/6.0.3-2/debian/patches/90_gcc6.patch
trunk/packages/arb/tags/6.0.3-2/debian/patches/series
trunk/packages/arb/tags/6.0.3-2/debian/rules
Removed:
trunk/packages/arb/tags/6.0.3-2/debian/changelog
trunk/packages/arb/tags/6.0.3-2/debian/control
trunk/packages/arb/tags/6.0.3-2/debian/patches/series
trunk/packages/arb/tags/6.0.3-2/debian/rules
Log:
[svn-buildpackage] Tagging arb 6.0.3-2
Deleted: trunk/packages/arb/tags/6.0.3-2/debian/changelog
===================================================================
--- trunk/packages/arb/trunk/debian/changelog 2016-09-16 20:20:41 UTC (rev
22809)
+++ trunk/packages/arb/tags/6.0.3-2/debian/changelog 2016-09-17 14:44:37 UTC
(rev 22819)
@@ -1,667 +0,0 @@
-arb (6.0.3-1) unstable; urgency=medium
-
- * New upstream version
- * Applied all l10n patches - thanks a lot for the great l10n team
- for pushing this
- * Debconf templates and debian/control reviewed by the debian-l10n-
- english team as part of the Smith review project. Closes: #761942
- * [Debconf translation updates]
- * Danish (Joe Hansen). Closes: #764869
- * Dutch; (Frans Spiesschaert). Closes: #765088
- * Russian (Yuri Kozlov). Closes: #765096
- * Portuguese (Américo Monteiro). Closes: #761503
- * Danish (Joe Hansen). Closes: #765865
- * Czech (Michal Simunek). Closes: #766600
- * Italian (Daniele Forsi). Closes: #766684
- * German (Chris Leick). Closes: #766689
- * French (Steve Petruzzello). Closes: #766728
- * Catalan; (Innocent De Marchi). Closes: #766855
- * Japanese (Hideki Yamane (Debian-JP)). Closes: #767247
- * extra linker flag proposed by Tim Booth
- * Lintian override to avoid false positives
- * cme fix dpkg-control
- * spelling+lintian fixes in d/copyright
-
- -- Andreas Tille <ti...@debian.org> Thu, 10 Dec 2015 12:26:14 +0100
-
-arb (6.0.2-2) unstable; urgency=medium
-
- [ Elmar Pruesse ]
- * Add Portugese debconf translation (thanks to Américo Monteiro
- <a_monte...@gmx.com> for the patch)
- Closes: #761503
- * Add Russian debconf translation (thanks to Yuri Kozlov
- <yu...@komyakino.ru> for the patch)
- Closes: #761616
- * debian/arb_CHANGELOG.txt -> debian/changelog (fix lintian complaint)
-
- [ Andreas Tille ]
- * Skip compiler version check at all
- Closes: #793187
-
- -- Andreas Tille <ti...@debian.org> Wed, 22 Jul 2015 22:49:16 +0200
-
-arb (6.0.2-1) unstable; urgency=medium
-
- [ Andreas Tille ]
- * New upstream version
- Closes: #741890
- * debian/upstream -> debian/upstream/metadata
- * debian/control:
- - Build-Depends: added libglib2.0-dev
- - Depends: added mafft, mrbayes
- * debian/rules
- - Add explicite --remove-section=.comment option to manual strip call
- * cme fix dpkg-control
- * arb-common.dirs: Do not create unneeded lintian dir
- * Add turkish debconf translation (thanks for the patch to Mert Dirik
- <mertdi...@gmail.com>)
- Closes: #757497
-
- [ Elmar Pruesse ]
- * patches removed:
- - 10_config.makefiles.patch,
- 80_no_GL.patch
- removed in favor of creating file from config.makefile.template via
- sed in debian/control
- - 20_Makefile_main.patch
- merged upstream
- - 21_Makefiles.patch
- no longer needed
- - 30_tmpfile_CVE-2008-5378.patch:
- merged upstream
- - 50_fix_gcc-4.8.patch:
- merged upstream
- - 40_add_libGLU.patch:
- libGLU not needed for arb_ntree)
- - 60_use_debian_packaged_raxml.patch:
- merged upstream
- - 70_hardening.patch
- merged upstream
- - 72_add_math_lib_to_linker.patch
- does not appear to be needed
- * patches added:
- - 10_upstream_r12793__show_db_load_progress:
- backported patch showing progress while ARB is loading a database
- (needed as indicator/splash screen while ARB is launching)
- - 20_upstream_r12794__socket_permissions:
- backported security fix
- - 30_upstream_r12814__desktop_keywords:
- backported add keywords to desktop (fixes lintian warning)
- - 40_upstream_r12815__lintian_spelling:
- backported fix for lintian reported spelling errors
- - 50_private_nameservers
- change configuration to put nameservers into users home dirs
- (avoids need for shared writeable directory)
- - 60_use_debian_phyml
- use phyml from debian package for both interfaces in ARB
- * debian/rules:
- - create config.makefile from override_dh_configure target
- - use "make tarfile" in override_dh_install
- - remove extra cleaning not needed for ARB 6
- - use "dh_install --list-missing" to avoid missing files
- - added override_dh_fixperms target
- * debian/control:
- - added libarb-dev package
- - Depends: added phyml, xdg-utils
- - Suggests: removed phyml
- - fix lintian duplicate-short-description (new descriptions)
- * debian/*.install:
- - "unrolled" confusing globbing to select files
- - pick files from debian/tmp
- - moved all config files to /etc/arb
- * debian/arb-common.templates: updated
- * scripts:
- - removed arb-add-pt-server
- - launch-wrapper:
- - only add demo.arb to newly created $ARBUSERDATA
- - pass commandline arguments through bin/arb wrapper
- - preinst: removing old PT server index files on upgrade from 5.5*
- - postinst: set setgid on shared PT dir
- * rewrote arb.1 manfile
- * added file icon for ARB databases
- * using upstream arb_tcp.dat
-
- -- Elmar Pruesse <el...@pruesse.net> Tue, 02 Sep 2014 15:15:06 +0200
-
-arb (5.5-5) unstable; urgency=low
-
- * build-depend on libtiff-dev instead of libtiff4-dev (thanks for the
- patch to Logan Rosen <lo...@ubuntu.com>)
- Closes: #729769
- * cme fix dpkg-control
- * cme fix dpkg-copyright
- * canonical Vcs fields
- * debian/patches/hardening.patch: Propagate hardening options
-
- -- Andreas Tille <ti...@debian.org> Wed, 04 Dec 2013 09:24:14 +0100
-
-arb (5.5-4) unstable; urgency=low
-
- * Build-Depends: libglew-dev instead of libglew1.5-dev
- Closes: #714327
-
- -- Andreas Tille <ti...@debian.org> Fri, 28 Jun 2013 09:42:35 +0200
-
-arb (5.5-3) unstable; urgency=low
-
- * debian/control:
- - Restrict arb to architectures
- amd64 i386 kfreebsd-i386 kfreebsd-amd64
- because only there raxml is fullfilled. This makes sense because
- arb will most probably used only on these architectures anyway.
- Closes: #714268
- - Remove Dependency from openjdk which is not needed any more
- according to upstream
- * debian/arb-common.README.debian: Explain restriction to certain
- architectures
- * debian/arb.README.debian: Updated about architecture restriction
- and other things
-
- -- Andreas Tille <ti...@debian.org> Thu, 27 Jun 2013 14:52:57 +0200
-
-arb (5.5-2) unstable; urgency=low
-
- [ Tim Booth ]
- * debian/rules: Make sure arb_edit4 will be really built and abort package
- building process if not
-
- [ Andreas Tille ]
- * Rebuild against libmotiv-dev in main
- Closes: #713061
- * Add 4.6.3, 4.7.3 and 4.8.[0-3] to ALLOWED_GCC_VERSIONS
- Closes: #713219
- * debian/control:
- - remove DM-Upload-Allowed
- - Build-Depends: libglu1-mesa-dev
- - add raxml to Depends and do not build third party copy any more
- (debian/patches/60_use_debian_packaged_raxml.patch)
- * debian/patches/*: DEP3 comments
- * debian/patches/50_build_naligner.patch: Fix build issue that was
- caused by some brocken $(CFLAGS)
- * debian/rules: use xz compression
-
- -- Andreas Tille <ti...@debian.org> Mon, 24 Jun 2013 09:42:03 +0200
-
-arb (5.5-1) unstable; urgency=low
-
- * New upstream version (+adapted patches)
- * Standards-Version: 3.9.4 (no changes needed)
- * debian/po: Add Slovak po-debconf translation (Thanks to
- Slavko <sla...@slavino.sk> for the translation)
- Closes: #686275
- * debian/rules: Add '-lm' as suggested in patch by Konstantinos Margaritis
- <konstantinos.margari...@freevec.org> to fix the build problem on armhf.
- This together with new upstream closes: #692499
-
- -- Andreas Tille <ti...@debian.org> Tue, 11 Dec 2012 09:59:08 +0100
-
-arb (5.3-4) unstable; urgency=low
-
- * debian/upstream: Add citations
- * debian/control:
- - Build-Depends: libpng-dev instead of libpng12-dev
- Closes: #662270
- - Standards-Version: 3.9.3 (no changes needed)
- * debian/po/nl.po: Add Dutch translation of debconf templates
- Thanks for the translation to Jeroen Schot <sc...@a-eskwadraat.nl>
- Closes: #654763
- * debian/patches/30_Makefile_main:
- - Enable gcc-4.7 as well
- Closes: #682404
- - Enable using hardening flags
- * debian/patches/gcc-4.7.patch: Fix gcc-4.7 build issue
- * debhelper 9 (control+compat)
- * debian/rules:
- - Fixed clean target
- - propagate hardening flags
-
- -- Andreas Tille <ti...@debian.org> Thu, 26 Jul 2012 12:15:21 +0200
-
-arb (5.3-3) unstable; urgency=low
-
- * debian/control:
- - Build-Depends: time
- Strangely enough this is not needed in local pbnuilder/sbuild
- environments but on autobuilders this seems to be a problem
- according to comparing the build logs
- - Build-Depends: libbio-perl-perl
- Otherwise some not-critical checks will fail
- * debian/arb.prerm: Care for removal of conffile link created in postinst
- Closes: #656035
- * debian/rules:
- - clean up some manual handling of files and dirs which is not
- needed any more with recent versions
- - insert check which verifies that binary-indep target is really
- builded and changed files and dirs are previousely created
- Closes: #658691
-
- -- Andreas Tille <ti...@debian.org> Thu, 09 Feb 2012 13:44:22 +0100
-
-arb (5.3-2) unstable; urgency=low
-
- * debian/arb.README.Debian: Dropped molphy related notice
- * debian/control:
- - Remove Build-Depends: x11proto-print-dev
- - Remove at least explicite Build-Depends: libxp-dev
- Closes: #623638
- * debian/{control,rules}: Remove quilt which is unneeded when
- using source format 3.0 (quilt)
- * debian/po/ca.po: Catalan translation (thanks to Innocent De Marchi
- <tangram.pe...@gmail.com>)
- Closes: #632206
-
- -- Andreas Tille <ti...@debian.org> Thu, 15 Dec 2011 17:00:46 +0100
-
-arb (5.3-1) unstable; urgency=low
-
- [ Nelson A. de Oliveira ]
- * Fix FTBFS: replaced sablotron by xsltproc in debian/control
- (Closes: #634999)
- * Replaced arb dependency on the ssh metapackage by openssh-client only
-
- [ Andreas Tille ]
- * New upstream version (including updateing debian/patches/*)
- This version doese not depend from molphy any more
- * debian/control
- - Do not depend from molphy which is removed from Debian any more
- - Standards-Version: 3.9.2 (no changes needed)
- - Fixed Vcs fields
- * Debhelper 8 (control+compat)
- * debian/copyright: several DEP5 fixes
-
- -- Andreas Tille <ti...@debian.org> Fri, 11 Nov 2011 11:46:22 +0100
-
-arb (5.2-1) unstable; urgency=low
-
- * New upstream version
- * Standards-Version: 3.9.1 (no changes needed)
- * New debconf translations
- - Vietnamese (thanks to Clytie Siddall <cly...@riverland.net.au>)
- Closes: #576020
- - Danish (thanks to Joe Dalton <joedalt...@yahoo.dk>)
- Closes: #584283
- - Brazilian Portuguese (thanks to Gustavo Jordan
- <gustavojcbra...@gmail.com>)
- Closes: #596647
- * Drop xview-clients Suggests in debian/control and replace any occurence
- of textedit (which is part of xview-clients) by editor via
- debian/patches/no_xview_dependency.patch
- Closes: 612534
- * debian/patches/20_Makefiles: clean up some errors in clean target
- * debian/patches/20_config.makefiles: Really get the DEB_BUILD_ARCH_BITS
- applied
- * Build-Depends: time
-
- -- Andreas Tille <ti...@debian.org> Wed, 09 Feb 2011 16:56:15 +0100
-
-arb (5.1-1) unstable; urgency=low
-
- [ Andreas Tille ]
- * New upstream version
- Closes: #522021
- * debian/control:
- - Package arb-doc in non-free/doc
- - Standards-Version: 3.8.4 (Added README.source)
- - Build-Depends: dpkg-dev (>= 1.15.4) to make use of
- `dpkg-architecture -qDEB_BUILD_ARCH_BITS` in Makefile
- - Build-Depends: xutils-dev
- - arb Recommends: bioperl
- - arb Suggests: phyml
- - Build-Depends: openjdk-6-jdk instead of kaffe which might be subject
- of removal from Debian in the near future
- * Removed / changed patches which were applied upstream
- - debian/patches/ARB_release200712_gcc4.3.1.patch removed
- - debian/patches/20_replace_rxp_by_xmllint.patch removed
- - debian/patches/tmpfile_CVE-2008-5378.patch removed applied part
- * debian/{rules,*.install}: Cleanup regarding changes in new upstream version
- * debian/arb.README.debian:
- - Removed useless warning about prereleases
- - Added hint about different phyml versions
- * debian/patches/10_gcc_4.4.3.patch: compile with gcc-4.4.3
- * debian/rules: Add ARBHOME variable explicitly to clean target
- * Added Finish debconf translation (Thanks to Esko Arajärvi <e...@iki.fi>)
- Closes: #536516
- * Added Galician debconf translation (Thanks to marce
- <mvillar...@gmail.com>)
- Closes: #537534
- * Added Japanese debconf translation (Thankse to Hideki Yamane
- <henr...@debian.or.jp>)
- Closes: #554882
- * Added: Spanish debconf translation (Thanks to Francisco Javier Cuadrado
- <fcocuadr...@gmail.com>)
- Closes: #573005
- * Switch to source format 3.0
-
- [ David Paleino ]
- * Removed myself from Uploaders
- * New watch file
-
- -- Andreas Tille <ti...@debian.org> Tue, 23 Mar 2010 14:37:30 +0100
-
-arb (0.0.20071207.1-7) unstable; urgency=low
-
- * Bumped debhelper to version 7
- -> dh_clean -k -> dh_clean; dh_prep
- * Standards-Version: 3.8.1 (no changes needed)
- * Enhanced package description of arb-common and arb-doc
- Closes: #517710
- * Added Portuguese translation for debconf messages (thanks to
- Traduz <tra...@debianpt.org>)
- Closes: #516958
- * Added Depends: ${misc:Depends} to all packages
-
- -- Andreas Tille <ti...@debian.org> Fri, 20 Mar 2009 08:14:21 +0100
-
-arb (0.0.20071207.1-6) unstable; urgency=low
-
- * Save use of /tmp in arb-kill and addressing the other
- potential tempfile symlink attacks reported in
- CVE-2008-5378: possible symlink attacks
- Closes: #508942
- * Use xmllint instead of rxp to verify helpfile XML because
- rxp is outdate, unmaintained and should be removed.
- * Do not use command-with-path-in-maintainer-script in
- postinst and config
- * Added Russian debconf translation (Thanks to Yuri Kozlov)
- Closes: #511376
-
- -- Andreas Tille <ti...@debian.org> Tue, 10 Feb 2009 23:32:41 +0100
-
-arb (0.0.20071207.1-5) unstable; urgency=low
-
- * Fix tempfile issues in upstream scripts
- Closes: #496396
- * Fix arb name server location in config file (Thanks to
- Felipe Figueiredo <phils...@gmail.com>)
- Closes: #495650
- * arb-common.config: Make sure that config file will not fail
- when NIS is used
-
- -- Andreas Tille <ti...@debian.org> Tue, 23 Sep 2008 13:32:05 +0200
-
-arb (0.0.20071207.1-4) unstable; urgency=low
-
- * debian/arb-common.postrm: Remove stuff arb leaves behind in
- /var/lib in case the package is purged
- Closes: #463010
- * More precise copyright / license statements in debian/copyright
- * debian/arb-doc.lintian-overrides: Explain why arb-doc should
- not be in section doc
- * Moved debian/*.lintian.overrides to *.lintian-overrides and
- make use of dh_lintian (includes increasing versioned depends
- of debhelper to >= 6.0.7)
- * Strip rpath from ARB.so using chrpath
- * Better short description which was to generic after [Biology]
- marker was removed.
-
- -- Andreas Tille <ti...@debian.org> Wed, 23 Jul 2008 08:10:46 +0200
-
-arb (0.0.20071207.1-3) unstable; urgency=low
-
- [ Charles Plessy ]
- * Changed the doc-base section according to the new policy.
-
- [ Andreas Tille ]
- * Updated dependency from libglew (Build-Depends: libglew-dev ->
- libglew1.5-dev)
- Closes: #489330
- * Standards-Version: 3.8.0 (no changes needed)
- * debian/patches/30_Makefile_main: Enable gcc-4.3
- * Applied upstream patches to compile with gcc-4.3 (thanks to
- Ralf Westram <r...@arb-home.de>)
-
- -- Andreas Tille <ti...@debian.org> Mon, 07 Jul 2008 09:11:40 +0200
-
-arb (0.0.20071207.1-2) unstable; urgency=low
-
- * Added XS-Autobuild: yes to enable autobuilding
- * Slightly enhanced description
-
- -- Andreas Tille <ti...@debian.org> Thu, 06 Mar 2008 23:23:07 +0100
-
-arb (0.0.20071207.1-1) unstable; urgency=low
-
- [ David Paleino ]
- * debian/control:
- - Standards-Version 3.7.3
- - long lines wrapped
- - architecture set to "any" for architecture-dependent packages
- - fixed some typos in long descriptions
- - removed [Biology] pseudo-tag from short descriptions -- why not
- using DebTags?
- - updated Vcs-* fields
- - added myself to Uploaders
- - removing XS- from DM-Upload-Allowed
- * debian/watch added
- * debian/po/it.po added
- * debian/rules updated
-
- [ Andreas Tille ]
- * New upstream source
- debian/get-orig-source: Obtain official release.
- Remark: The originally downloaded source from 2007_12_07 was
- different from the currently available one. This is expressed
- in the additional ".1" in the version number.
- * Removed warning from long description because this is now an
- official release
- * debian/rules:
- - removed get-orig-source.old target
- - added missing '-' in clean target
- * Switched to quilt (dpatch was not able to apply patches
- from previous version)
-
- -- Andreas Tille <ti...@debian.org> Mon, 25 Feb 2008 09:34:30 +0100
-
-arb (0.0.20071207-1) unstable; urgency=low
-
- * New upstream version
- Closes: #446666
- * Added Build-Depends libglew-dev which is needed for 3D version
- * Added Build-Depends libxpm4-dev according to the advise of
- Charles Plessy <charles-debian-nos...@plessy.org> in bug #364908
- * Added x11proto-print-dev, libxpm-dev, libxp-dev,
- libgl1-mesa-swx11-dev (> 6.5.1-0.4)
- to build dependencies
- * Added to Build-Depends: libtiff4-dev, libxaw7-dev
- * Standards-Version: 3.7.2 (no changes necessary)
- * debhelper 5
- * use dpatch
- * Added license of new component RAxML to debian/copyright
- * Substituded ${Source-Version} by ${source:Version} resp.
- ${binary:Version}
- * debian/arb.menu: Applications/Science/Biology
- * move files from lib/* directly to /usr/lib/arb/lib instead of
- /usr/share/arb/lib and a bunch of symlinks
- * Set maintainer to Maintainer: Debian-Med Packaging Team
- <debian-med-packag...@lists.alioth.debian.org>
- * Added Portugese debconf translations (thanks to Miguel Figueiredo
- <el...@debianpt.org>
- Closes: #341558
- * Updated Czech debconf translations (thanks to Jakub Kasparec
- <m...@centrum.cz>)
- Closes: #356713, #392683
- * Do not build molphy and symlink to molphy executables instead
- * New configuration file format for arb_tcp.dat
- * Added Vcs-Browser, Vcs-Svn
- * Moved Homepage from long description to tags field
-
- -- Andreas Tille <ti...@debian.org> Mon, 05 Nov 2007 18:17:32 +0100
-
-arb (0.0.20050526-7) unstable; urgency=low
-
- * arb-common recommends arb
- * Added Build-Depends: g++
- * Because there is no sign that this version shows the behaviour
- reported in #325640 against the former version and the bug reporter
- did not respond to any request I decide to close this bug. Feel
- free to reopen if it seems necessary.
- Clsoes: #325640
-
- -- Andreas Tille <ti...@debian.org> Mon, 21 Nov 2005 14:09:01 +0100
-
-arb (0.0.20050526-6) unstable; urgency=low
-
- * Added transfig to depends
- * Removed "Depends: arb" from arb-common to avoid circular dependencies
- Closes: #339861
- * Added gcc 4.0.3 to supported compilers in Makefile
-
- -- Andreas Tille <ti...@debian.org> Wed, 9 Nov 2005 13:17:52 +0100
-
-arb (0.0.20050526-5) unstable; urgency=low
-
- * Enable writing of large amounts of sequence files. (Thanks for
- the patch to Elmar Pruesse <el...@pruesse.net>)
- Closes: #333391
- * Updated Swedish debconf template (Thanks to Daniel Nylander
- <yea...@lidkoping.net>)
- Closes: #332788
- * Updated French debconf template (Thanks to Jean-Luc Coulon
- <jean-luc.cou...@wanadoo.fr>)
- Closes: #333108
-
- -- Andreas Tille <ti...@debian.org> Wed, 12 Oct 2005 09:25:15 +0200
-
-arb (0.0.20050526-4) unstable; urgency=low
-
- * Included names.dat.template in arb-common:/var/lib/nas
- actually not only the file is missing but the directory of the file
- is also not found because a link to /var/lib/arb/nas is needed
- To enable a clean installation of the link the old empty directory
- has to be removed in a preinst script
- * Fixed location of arb nameserver in debian/conf/{arb_tcp,arb_ntree}.dat
- Closes: #332436
- * Make sure that nameserver directory is accessible by members of group
- arb in postinst file
- * Changed debconf template to ask for arb users
- * Added warning to arb wrapper script if the user who starts arb is not
- yet member of group arb and thus not allowed to write to /var/lib/arb
-
- -- Andreas Tille <ti...@debian.org> Thu, 6 Oct 2005 21:38:12 +0200
-
-arb (0.0.20050526-3) unstable; urgency=low
-
- * Added Swedish debconf templates translation (thanks to
- Daniel Nylander <yea...@lidkoping.net>
- Closes: #330428
- * Added ssh to dependencies because it is used in some scripts
- * Dropped last version number in Standards-Version (now: 3.6.2)
-
- -- Andreas Tille <ti...@debian.org> Wed, 28 Sep 2005 11:18:17 +0200
-
-arb (0.0.20050526-2) unstable; urgency=low
-
- * Added explicite permission to distribute with Debian to
- debian/copyright
- * Fixed debian/rules + WINDOW/Makefile to ensure that libARB can be found
- in the build process (Many thanks to Petr Salinger
<petr.salin...@t-systems.cz>)
- * Reduced number of architectures to the set that features xviewg-dev
-
- -- Andreas Tille <ti...@debian.org> Thu, 8 Sep 2005 14:08:07 +0200
-
-arb (0.0.20050526-1) unstable; urgency=low
-
- * New upstream version.
- * Added disclaimer from FTP-download directory to debian/arb.README.Debian
- and debian/copyright
- * Added parts of the disclaimer from FTP-download directory to
- debian/control
- * Patch for NAMES/names.cxx (Thanks to Petr Salinger
<petr.salin...@t-systems.cz>)
-
- -- Andreas Tille <ti...@debian.org> Tue, 30 Aug 2005 09:49:01 +0200
-
-arb (0.0.20050506-3) unstable; urgency=low
-
- * Recommend: xfig
- * solved debconf | debconf-2.0 issue by ${misc:Depends}
- * debian/control: Homepage: http://www.arb-home.de/
- * Renamed debian/po/cz.po to cs.po (Thanks to Denis Barbier
<barb...@debian.org>)
- Closes: #325062
- * Depends: freeglut3-dev | libglu-dev
- * Build-Depends: libpng12-dev (Thanks to Petr Salinger
<petr.salin...@t-systems.cz>)
- * Some patches that where necessary for building with gcc 4.0.x
- (Thanks to Petr Salinger <petr.salin...@t-systems.cz>)
- * arb-common: Depends: adduser
- * arb-common.config: Removed bashism
-
- -- Andreas Tille <ti...@debian.org> Fri, 26 Aug 2005 12:58:01 +0200
-
-arb (0.0.20050506-2) unstable; urgency=low
-
- * Enable killing all arb processes in arb-kill
- * Standards-Version: 3.6.2.1
- * menu items moved (no changes in packaging, just use new debhelper)
- * Czech debconf translation, thanks to Igor Jasa <igor.j...@seznam.cz>
- Closes: #318442
-
- -- Andreas Tille <ti...@debian.org> Wed, 1 Jun 2005 13:15:04 +0200
-
-arb (0.0.20050506-1) unstable; urgency=low
-
- * New upstream version
- * Adapted get-orig-source target to new directory layout
- * Added French debconf template
- Closes: #309222
-
- -- Andreas Tille <ti...@debian.org> Mon, 30 May 2005 15:17:44 +0200
-
-arb (0.0.20050318-1) unstable; urgency=low
-
- * New upstream snapshot
- * Added freeglut3-dev and libglew-dev Build-dependency
- * First official package uploaded to Debian
- Closes: #282037
-
- -- Andreas Tille <ti...@debian.org> Thu, 10 Mar 2005 11:23:28 +0100
-
-arb (0.0.20041206-1) unstable; urgency=low
-
- * New upstream snapshot
- * Reintegrate also arb-nas package because it is the main
- Arb application according to the author. It makes no sense
- to separate it in an extra package.
-
- -- Andreas Tille <ti...@debian.org> Mon, 06 Dec 2004 10:48:01 +0100
-
-arb (0.0.20041112-4) unstable; urgency=low
-
- * Group arb which has rw-permissions to arb databases
- * Split configuration file into several pieces and megre them in
- postinst. This enables splitting into several independent packages
- because upstream uses a single config file
- * Script arb-add-pt-server enables users of group arb to add
- PT_SERVER entries to configuration files
- * Manage users of group arb via debconf
-
- -- Andreas Tille <ti...@debian.org> Tue, 23 Nov 2004 12:50:22 +0100
-
-arb (0.0.20041112-3) unstable; urgency=low
-
- * Dropped package arb-extra and abr-server after discussing with the
- authors because it does not really make sense to split this from
- main package.
- * Enhanced package arb-nas
- * New package libarb with dynamic libraries
-
- -- Andreas Tille <ti...@debian.org> Fri, 19 Nov 2004 15:56:53 +0100
-
-arb (0.0.20041112-2) unstable; urgency=low
-
- * Compile with libmotif-dev because liblesstif has trouble with
- some controls in the search inteface.
- * Moved some files to the server package.
- * Exclude arb/lib/BUGS from package because its irrelevant
- * Move arb/lib/help_html to doc package
- * Wrote placeholder manpage
- * Added lintian.overrides
- * Moved arb_tcp.dat to /etc/arb and set symlink
-
- -- Andreas Tille <ti...@debian.org> Tue, 16 Nov 2004 18:23:59 +0100
-
-arb (0.0.20041112-1) unstable; urgency=low
-
- * Inoffcial test release.
-
- -- Andreas Tille <ti...@debian.org> Fri, 12 Nov 2004 13:15:16 +0100
-
Copied: trunk/packages/arb/tags/6.0.3-2/debian/changelog (from rev 22815,
trunk/packages/arb/trunk/debian/changelog)
===================================================================
--- trunk/packages/arb/tags/6.0.3-2/debian/changelog
(rev 0)
+++ trunk/packages/arb/tags/6.0.3-2/debian/changelog 2016-09-17 14:44:37 UTC
(rev 22819)
@@ -0,0 +1,680 @@
+arb (6.0.3-2) unstable; urgency=medium
+
+ * Team upload.
+ * Fix building with GCC 6.
+ - Use correct return type in method definition.
+ - Allow for newer __cplusplus versions.
+ Closes: #834170
+ * Use secure Vcs-Browser.
+ * Do not depend on perl-modules.
+ * Bump Standards-Version.
+
+ -- Sascha Steinbiss <sa...@debian.org> Sat, 17 Sep 2016 10:34:18 +0000
+
+arb (6.0.3-1) unstable; urgency=medium
+
+ * New upstream version
+ * Applied all l10n patches - thanks a lot for the great l10n team
+ for pushing this
+ * Debconf templates and debian/control reviewed by the debian-l10n-
+ english team as part of the Smith review project. Closes: #761942
+ * [Debconf translation updates]
+ * Danish (Joe Hansen). Closes: #764869
+ * Dutch; (Frans Spiesschaert). Closes: #765088
+ * Russian (Yuri Kozlov). Closes: #765096
+ * Portuguese (Américo Monteiro). Closes: #761503
+ * Danish (Joe Hansen). Closes: #765865
+ * Czech (Michal Simunek). Closes: #766600
+ * Italian (Daniele Forsi). Closes: #766684
+ * German (Chris Leick). Closes: #766689
+ * French (Steve Petruzzello). Closes: #766728
+ * Catalan; (Innocent De Marchi). Closes: #766855
+ * Japanese (Hideki Yamane (Debian-JP)). Closes: #767247
+ * extra linker flag proposed by Tim Booth
+ * Lintian override to avoid false positives
+ * cme fix dpkg-control
+ * spelling+lintian fixes in d/copyright
+
+ -- Andreas Tille <ti...@debian.org> Thu, 10 Dec 2015 12:26:14 +0100
+
+arb (6.0.2-2) unstable; urgency=medium
+
+ [ Elmar Pruesse ]
+ * Add Portugese debconf translation (thanks to Américo Monteiro
+ <a_monte...@gmx.com> for the patch)
+ Closes: #761503
+ * Add Russian debconf translation (thanks to Yuri Kozlov
+ <yu...@komyakino.ru> for the patch)
+ Closes: #761616
+ * debian/arb_CHANGELOG.txt -> debian/changelog (fix lintian complaint)
+
+ [ Andreas Tille ]
+ * Skip compiler version check at all
+ Closes: #793187
+
+ -- Andreas Tille <ti...@debian.org> Wed, 22 Jul 2015 22:49:16 +0200
+
+arb (6.0.2-1) unstable; urgency=medium
+
+ [ Andreas Tille ]
+ * New upstream version
+ Closes: #741890
+ * debian/upstream -> debian/upstream/metadata
+ * debian/control:
+ - Build-Depends: added libglib2.0-dev
+ - Depends: added mafft, mrbayes
+ * debian/rules
+ - Add explicite --remove-section=.comment option to manual strip call
+ * cme fix dpkg-control
+ * arb-common.dirs: Do not create unneeded lintian dir
+ * Add turkish debconf translation (thanks for the patch to Mert Dirik
+ <mertdi...@gmail.com>)
+ Closes: #757497
+
+ [ Elmar Pruesse ]
+ * patches removed:
+ - 10_config.makefiles.patch,
+ 80_no_GL.patch
+ removed in favor of creating file from config.makefile.template via
+ sed in debian/control
+ - 20_Makefile_main.patch
+ merged upstream
+ - 21_Makefiles.patch
+ no longer needed
+ - 30_tmpfile_CVE-2008-5378.patch:
+ merged upstream
+ - 50_fix_gcc-4.8.patch:
+ merged upstream
+ - 40_add_libGLU.patch:
+ libGLU not needed for arb_ntree)
+ - 60_use_debian_packaged_raxml.patch:
+ merged upstream
+ - 70_hardening.patch
+ merged upstream
+ - 72_add_math_lib_to_linker.patch
+ does not appear to be needed
+ * patches added:
+ - 10_upstream_r12793__show_db_load_progress:
+ backported patch showing progress while ARB is loading a database
+ (needed as indicator/splash screen while ARB is launching)
+ - 20_upstream_r12794__socket_permissions:
+ backported security fix
+ - 30_upstream_r12814__desktop_keywords:
+ backported add keywords to desktop (fixes lintian warning)
+ - 40_upstream_r12815__lintian_spelling:
+ backported fix for lintian reported spelling errors
+ - 50_private_nameservers
+ change configuration to put nameservers into users home dirs
+ (avoids need for shared writeable directory)
+ - 60_use_debian_phyml
+ use phyml from debian package for both interfaces in ARB
+ * debian/rules:
+ - create config.makefile from override_dh_configure target
+ - use "make tarfile" in override_dh_install
+ - remove extra cleaning not needed for ARB 6
+ - use "dh_install --list-missing" to avoid missing files
+ - added override_dh_fixperms target
+ * debian/control:
+ - added libarb-dev package
+ - Depends: added phyml, xdg-utils
+ - Suggests: removed phyml
+ - fix lintian duplicate-short-description (new descriptions)
+ * debian/*.install:
+ - "unrolled" confusing globbing to select files
+ - pick files from debian/tmp
+ - moved all config files to /etc/arb
+ * debian/arb-common.templates: updated
+ * scripts:
+ - removed arb-add-pt-server
+ - launch-wrapper:
+ - only add demo.arb to newly created $ARBUSERDATA
+ - pass commandline arguments through bin/arb wrapper
+ - preinst: removing old PT server index files on upgrade from 5.5*
+ - postinst: set setgid on shared PT dir
+ * rewrote arb.1 manfile
+ * added file icon for ARB databases
+ * using upstream arb_tcp.dat
+
+ -- Elmar Pruesse <el...@pruesse.net> Tue, 02 Sep 2014 15:15:06 +0200
+
+arb (5.5-5) unstable; urgency=low
+
+ * build-depend on libtiff-dev instead of libtiff4-dev (thanks for the
+ patch to Logan Rosen <lo...@ubuntu.com>)
+ Closes: #729769
+ * cme fix dpkg-control
+ * cme fix dpkg-copyright
+ * canonical Vcs fields
+ * debian/patches/hardening.patch: Propagate hardening options
+
+ -- Andreas Tille <ti...@debian.org> Wed, 04 Dec 2013 09:24:14 +0100
+
+arb (5.5-4) unstable; urgency=low
+
+ * Build-Depends: libglew-dev instead of libglew1.5-dev
+ Closes: #714327
+
+ -- Andreas Tille <ti...@debian.org> Fri, 28 Jun 2013 09:42:35 +0200
+
+arb (5.5-3) unstable; urgency=low
+
+ * debian/control:
+ - Restrict arb to architectures
+ amd64 i386 kfreebsd-i386 kfreebsd-amd64
+ because only there raxml is fullfilled. This makes sense because
+ arb will most probably used only on these architectures anyway.
+ Closes: #714268
+ - Remove Dependency from openjdk which is not needed any more
+ according to upstream
+ * debian/arb-common.README.debian: Explain restriction to certain
+ architectures
+ * debian/arb.README.debian: Updated about architecture restriction
+ and other things
+
+ -- Andreas Tille <ti...@debian.org> Thu, 27 Jun 2013 14:52:57 +0200
+
+arb (5.5-2) unstable; urgency=low
+
+ [ Tim Booth ]
+ * debian/rules: Make sure arb_edit4 will be really built and abort package
+ building process if not
+
+ [ Andreas Tille ]
+ * Rebuild against libmotiv-dev in main
+ Closes: #713061
+ * Add 4.6.3, 4.7.3 and 4.8.[0-3] to ALLOWED_GCC_VERSIONS
+ Closes: #713219
+ * debian/control:
+ - remove DM-Upload-Allowed
+ - Build-Depends: libglu1-mesa-dev
+ - add raxml to Depends and do not build third party copy any more
+ (debian/patches/60_use_debian_packaged_raxml.patch)
+ * debian/patches/*: DEP3 comments
+ * debian/patches/50_build_naligner.patch: Fix build issue that was
+ caused by some brocken $(CFLAGS)
+ * debian/rules: use xz compression
+
+ -- Andreas Tille <ti...@debian.org> Mon, 24 Jun 2013 09:42:03 +0200
+
+arb (5.5-1) unstable; urgency=low
+
+ * New upstream version (+adapted patches)
+ * Standards-Version: 3.9.4 (no changes needed)
+ * debian/po: Add Slovak po-debconf translation (Thanks to
+ Slavko <sla...@slavino.sk> for the translation)
+ Closes: #686275
+ * debian/rules: Add '-lm' as suggested in patch by Konstantinos Margaritis
+ <konstantinos.margari...@freevec.org> to fix the build problem on armhf.
+ This together with new upstream closes: #692499
+
+ -- Andreas Tille <ti...@debian.org> Tue, 11 Dec 2012 09:59:08 +0100
+
+arb (5.3-4) unstable; urgency=low
+
+ * debian/upstream: Add citations
+ * debian/control:
+ - Build-Depends: libpng-dev instead of libpng12-dev
+ Closes: #662270
+ - Standards-Version: 3.9.3 (no changes needed)
+ * debian/po/nl.po: Add Dutch translation of debconf templates
+ Thanks for the translation to Jeroen Schot <sc...@a-eskwadraat.nl>
+ Closes: #654763
+ * debian/patches/30_Makefile_main:
+ - Enable gcc-4.7 as well
+ Closes: #682404
+ - Enable using hardening flags
+ * debian/patches/gcc-4.7.patch: Fix gcc-4.7 build issue
+ * debhelper 9 (control+compat)
+ * debian/rules:
+ - Fixed clean target
+ - propagate hardening flags
+
+ -- Andreas Tille <ti...@debian.org> Thu, 26 Jul 2012 12:15:21 +0200
+
+arb (5.3-3) unstable; urgency=low
+
+ * debian/control:
+ - Build-Depends: time
+ Strangely enough this is not needed in local pbnuilder/sbuild
+ environments but on autobuilders this seems to be a problem
+ according to comparing the build logs
+ - Build-Depends: libbio-perl-perl
+ Otherwise some not-critical checks will fail
+ * debian/arb.prerm: Care for removal of conffile link created in postinst
+ Closes: #656035
+ * debian/rules:
+ - clean up some manual handling of files and dirs which is not
+ needed any more with recent versions
+ - insert check which verifies that binary-indep target is really
+ builded and changed files and dirs are previousely created
+ Closes: #658691
+
+ -- Andreas Tille <ti...@debian.org> Thu, 09 Feb 2012 13:44:22 +0100
+
+arb (5.3-2) unstable; urgency=low
+
+ * debian/arb.README.Debian: Dropped molphy related notice
+ * debian/control:
+ - Remove Build-Depends: x11proto-print-dev
+ - Remove at least explicite Build-Depends: libxp-dev
+ Closes: #623638
+ * debian/{control,rules}: Remove quilt which is unneeded when
+ using source format 3.0 (quilt)
+ * debian/po/ca.po: Catalan translation (thanks to Innocent De Marchi
+ <tangram.pe...@gmail.com>)
+ Closes: #632206
+
+ -- Andreas Tille <ti...@debian.org> Thu, 15 Dec 2011 17:00:46 +0100
+
+arb (5.3-1) unstable; urgency=low
+
+ [ Nelson A. de Oliveira ]
+ * Fix FTBFS: replaced sablotron by xsltproc in debian/control
+ (Closes: #634999)
+ * Replaced arb dependency on the ssh metapackage by openssh-client only
+
+ [ Andreas Tille ]
+ * New upstream version (including updateing debian/patches/*)
+ This version doese not depend from molphy any more
+ * debian/control
+ - Do not depend from molphy which is removed from Debian any more
+ - Standards-Version: 3.9.2 (no changes needed)
+ - Fixed Vcs fields
+ * Debhelper 8 (control+compat)
+ * debian/copyright: several DEP5 fixes
+
+ -- Andreas Tille <ti...@debian.org> Fri, 11 Nov 2011 11:46:22 +0100
+
+arb (5.2-1) unstable; urgency=low
+
+ * New upstream version
+ * Standards-Version: 3.9.1 (no changes needed)
+ * New debconf translations
+ - Vietnamese (thanks to Clytie Siddall <cly...@riverland.net.au>)
+ Closes: #576020
+ - Danish (thanks to Joe Dalton <joedalt...@yahoo.dk>)
+ Closes: #584283
+ - Brazilian Portuguese (thanks to Gustavo Jordan
+ <gustavojcbra...@gmail.com>)
+ Closes: #596647
+ * Drop xview-clients Suggests in debian/control and replace any occurence
+ of textedit (which is part of xview-clients) by editor via
+ debian/patches/no_xview_dependency.patch
+ Closes: 612534
+ * debian/patches/20_Makefiles: clean up some errors in clean target
+ * debian/patches/20_config.makefiles: Really get the DEB_BUILD_ARCH_BITS
+ applied
+ * Build-Depends: time
+
+ -- Andreas Tille <ti...@debian.org> Wed, 09 Feb 2011 16:56:15 +0100
+
+arb (5.1-1) unstable; urgency=low
+
+ [ Andreas Tille ]
+ * New upstream version
+ Closes: #522021
+ * debian/control:
+ - Package arb-doc in non-free/doc
+ - Standards-Version: 3.8.4 (Added README.source)
+ - Build-Depends: dpkg-dev (>= 1.15.4) to make use of
+ `dpkg-architecture -qDEB_BUILD_ARCH_BITS` in Makefile
+ - Build-Depends: xutils-dev
+ - arb Recommends: bioperl
+ - arb Suggests: phyml
+ - Build-Depends: openjdk-6-jdk instead of kaffe which might be subject
+ of removal from Debian in the near future
+ * Removed / changed patches which were applied upstream
+ - debian/patches/ARB_release200712_gcc4.3.1.patch removed
+ - debian/patches/20_replace_rxp_by_xmllint.patch removed
+ - debian/patches/tmpfile_CVE-2008-5378.patch removed applied part
+ * debian/{rules,*.install}: Cleanup regarding changes in new upstream version
+ * debian/arb.README.debian:
+ - Removed useless warning about prereleases
+ - Added hint about different phyml versions
+ * debian/patches/10_gcc_4.4.3.patch: compile with gcc-4.4.3
+ * debian/rules: Add ARBHOME variable explicitly to clean target
+ * Added Finish debconf translation (Thanks to Esko Arajärvi <e...@iki.fi>)
+ Closes: #536516
+ * Added Galician debconf translation (Thanks to marce
+ <mvillar...@gmail.com>)
+ Closes: #537534
+ * Added Japanese debconf translation (Thankse to Hideki Yamane
+ <henr...@debian.or.jp>)
+ Closes: #554882
+ * Added: Spanish debconf translation (Thanks to Francisco Javier Cuadrado
+ <fcocuadr...@gmail.com>)
+ Closes: #573005
+ * Switch to source format 3.0
+
+ [ David Paleino ]
+ * Removed myself from Uploaders
+ * New watch file
+
+ -- Andreas Tille <ti...@debian.org> Tue, 23 Mar 2010 14:37:30 +0100
+
+arb (0.0.20071207.1-7) unstable; urgency=low
+
+ * Bumped debhelper to version 7
+ -> dh_clean -k -> dh_clean; dh_prep
+ * Standards-Version: 3.8.1 (no changes needed)
+ * Enhanced package description of arb-common and arb-doc
+ Closes: #517710
+ * Added Portuguese translation for debconf messages (thanks to
+ Traduz <tra...@debianpt.org>)
+ Closes: #516958
+ * Added Depends: ${misc:Depends} to all packages
+
+ -- Andreas Tille <ti...@debian.org> Fri, 20 Mar 2009 08:14:21 +0100
+
+arb (0.0.20071207.1-6) unstable; urgency=low
+
+ * Save use of /tmp in arb-kill and addressing the other
+ potential tempfile symlink attacks reported in
+ CVE-2008-5378: possible symlink attacks
+ Closes: #508942
+ * Use xmllint instead of rxp to verify helpfile XML because
+ rxp is outdate, unmaintained and should be removed.
+ * Do not use command-with-path-in-maintainer-script in
+ postinst and config
+ * Added Russian debconf translation (Thanks to Yuri Kozlov)
+ Closes: #511376
+
+ -- Andreas Tille <ti...@debian.org> Tue, 10 Feb 2009 23:32:41 +0100
+
+arb (0.0.20071207.1-5) unstable; urgency=low
+
+ * Fix tempfile issues in upstream scripts
+ Closes: #496396
+ * Fix arb name server location in config file (Thanks to
+ Felipe Figueiredo <phils...@gmail.com>)
+ Closes: #495650
+ * arb-common.config: Make sure that config file will not fail
+ when NIS is used
+
+ -- Andreas Tille <ti...@debian.org> Tue, 23 Sep 2008 13:32:05 +0200
+
+arb (0.0.20071207.1-4) unstable; urgency=low
+
+ * debian/arb-common.postrm: Remove stuff arb leaves behind in
+ /var/lib in case the package is purged
+ Closes: #463010
+ * More precise copyright / license statements in debian/copyright
+ * debian/arb-doc.lintian-overrides: Explain why arb-doc should
+ not be in section doc
+ * Moved debian/*.lintian.overrides to *.lintian-overrides and
+ make use of dh_lintian (includes increasing versioned depends
+ of debhelper to >= 6.0.7)
+ * Strip rpath from ARB.so using chrpath
+ * Better short description which was to generic after [Biology]
+ marker was removed.
+
+ -- Andreas Tille <ti...@debian.org> Wed, 23 Jul 2008 08:10:46 +0200
+
+arb (0.0.20071207.1-3) unstable; urgency=low
+
+ [ Charles Plessy ]
+ * Changed the doc-base section according to the new policy.
+
+ [ Andreas Tille ]
+ * Updated dependency from libglew (Build-Depends: libglew-dev ->
+ libglew1.5-dev)
+ Closes: #489330
+ * Standards-Version: 3.8.0 (no changes needed)
+ * debian/patches/30_Makefile_main: Enable gcc-4.3
+ * Applied upstream patches to compile with gcc-4.3 (thanks to
+ Ralf Westram <r...@arb-home.de>)
+
+ -- Andreas Tille <ti...@debian.org> Mon, 07 Jul 2008 09:11:40 +0200
+
+arb (0.0.20071207.1-2) unstable; urgency=low
+
+ * Added XS-Autobuild: yes to enable autobuilding
+ * Slightly enhanced description
+
+ -- Andreas Tille <ti...@debian.org> Thu, 06 Mar 2008 23:23:07 +0100
+
+arb (0.0.20071207.1-1) unstable; urgency=low
+
+ [ David Paleino ]
+ * debian/control:
+ - Standards-Version 3.7.3
+ - long lines wrapped
+ - architecture set to "any" for architecture-dependent packages
+ - fixed some typos in long descriptions
+ - removed [Biology] pseudo-tag from short descriptions -- why not
+ using DebTags?
+ - updated Vcs-* fields
+ - added myself to Uploaders
+ - removing XS- from DM-Upload-Allowed
+ * debian/watch added
+ * debian/po/it.po added
+ * debian/rules updated
+
+ [ Andreas Tille ]
+ * New upstream source
+ debian/get-orig-source: Obtain official release.
+ Remark: The originally downloaded source from 2007_12_07 was
+ different from the currently available one. This is expressed
+ in the additional ".1" in the version number.
+ * Removed warning from long description because this is now an
+ official release
+ * debian/rules:
+ - removed get-orig-source.old target
+ - added missing '-' in clean target
+ * Switched to quilt (dpatch was not able to apply patches
+ from previous version)
+
+ -- Andreas Tille <ti...@debian.org> Mon, 25 Feb 2008 09:34:30 +0100
+
+arb (0.0.20071207-1) unstable; urgency=low
+
+ * New upstream version
+ Closes: #446666
+ * Added Build-Depends libglew-dev which is needed for 3D version
+ * Added Build-Depends libxpm4-dev according to the advise of
+ Charles Plessy <charles-debian-nos...@plessy.org> in bug #364908
+ * Added x11proto-print-dev, libxpm-dev, libxp-dev,
+ libgl1-mesa-swx11-dev (> 6.5.1-0.4)
+ to build dependencies
+ * Added to Build-Depends: libtiff4-dev, libxaw7-dev
+ * Standards-Version: 3.7.2 (no changes necessary)
+ * debhelper 5
+ * use dpatch
+ * Added license of new component RAxML to debian/copyright
+ * Substituded ${Source-Version} by ${source:Version} resp.
+ ${binary:Version}
+ * debian/arb.menu: Applications/Science/Biology
+ * move files from lib/* directly to /usr/lib/arb/lib instead of
+ /usr/share/arb/lib and a bunch of symlinks
+ * Set maintainer to Maintainer: Debian-Med Packaging Team
+ <debian-med-packag...@lists.alioth.debian.org>
+ * Added Portugese debconf translations (thanks to Miguel Figueiredo
+ <el...@debianpt.org>
+ Closes: #341558
+ * Updated Czech debconf translations (thanks to Jakub Kasparec
+ <m...@centrum.cz>)
+ Closes: #356713, #392683
+ * Do not build molphy and symlink to molphy executables instead
+ * New configuration file format for arb_tcp.dat
+ * Added Vcs-Browser, Vcs-Svn
+ * Moved Homepage from long description to tags field
+
+ -- Andreas Tille <ti...@debian.org> Mon, 05 Nov 2007 18:17:32 +0100
+
+arb (0.0.20050526-7) unstable; urgency=low
+
+ * arb-common recommends arb
+ * Added Build-Depends: g++
+ * Because there is no sign that this version shows the behaviour
+ reported in #325640 against the former version and the bug reporter
+ did not respond to any request I decide to close this bug. Feel
+ free to reopen if it seems necessary.
+ Clsoes: #325640
+
+ -- Andreas Tille <ti...@debian.org> Mon, 21 Nov 2005 14:09:01 +0100
+
+arb (0.0.20050526-6) unstable; urgency=low
+
+ * Added transfig to depends
+ * Removed "Depends: arb" from arb-common to avoid circular dependencies
+ Closes: #339861
+ * Added gcc 4.0.3 to supported compilers in Makefile
+
+ -- Andreas Tille <ti...@debian.org> Wed, 9 Nov 2005 13:17:52 +0100
+
+arb (0.0.20050526-5) unstable; urgency=low
+
+ * Enable writing of large amounts of sequence files. (Thanks for
+ the patch to Elmar Pruesse <el...@pruesse.net>)
+ Closes: #333391
+ * Updated Swedish debconf template (Thanks to Daniel Nylander
+ <yea...@lidkoping.net>)
+ Closes: #332788
+ * Updated French debconf template (Thanks to Jean-Luc Coulon
+ <jean-luc.cou...@wanadoo.fr>)
+ Closes: #333108
+
+ -- Andreas Tille <ti...@debian.org> Wed, 12 Oct 2005 09:25:15 +0200
+
+arb (0.0.20050526-4) unstable; urgency=low
+
+ * Included names.dat.template in arb-common:/var/lib/nas
+ actually not only the file is missing but the directory of the file
+ is also not found because a link to /var/lib/arb/nas is needed
+ To enable a clean installation of the link the old empty directory
+ has to be removed in a preinst script
+ * Fixed location of arb nameserver in debian/conf/{arb_tcp,arb_ntree}.dat
+ Closes: #332436
+ * Make sure that nameserver directory is accessible by members of group
+ arb in postinst file
+ * Changed debconf template to ask for arb users
+ * Added warning to arb wrapper script if the user who starts arb is not
+ yet member of group arb and thus not allowed to write to /var/lib/arb
+
+ -- Andreas Tille <ti...@debian.org> Thu, 6 Oct 2005 21:38:12 +0200
+
+arb (0.0.20050526-3) unstable; urgency=low
+
+ * Added Swedish debconf templates translation (thanks to
+ Daniel Nylander <yea...@lidkoping.net>
+ Closes: #330428
+ * Added ssh to dependencies because it is used in some scripts
+ * Dropped last version number in Standards-Version (now: 3.6.2)
+
+ -- Andreas Tille <ti...@debian.org> Wed, 28 Sep 2005 11:18:17 +0200
+
+arb (0.0.20050526-2) unstable; urgency=low
+
+ * Added explicite permission to distribute with Debian to
+ debian/copyright
+ * Fixed debian/rules + WINDOW/Makefile to ensure that libARB can be found
+ in the build process (Many thanks to Petr Salinger
<petr.salin...@t-systems.cz>)
+ * Reduced number of architectures to the set that features xviewg-dev
+
+ -- Andreas Tille <ti...@debian.org> Thu, 8 Sep 2005 14:08:07 +0200
+
+arb (0.0.20050526-1) unstable; urgency=low
+
+ * New upstream version.
+ * Added disclaimer from FTP-download directory to debian/arb.README.Debian
+ and debian/copyright
+ * Added parts of the disclaimer from FTP-download directory to
+ debian/control
+ * Patch for NAMES/names.cxx (Thanks to Petr Salinger
<petr.salin...@t-systems.cz>)
+
+ -- Andreas Tille <ti...@debian.org> Tue, 30 Aug 2005 09:49:01 +0200
+
+arb (0.0.20050506-3) unstable; urgency=low
+
+ * Recommend: xfig
+ * solved debconf | debconf-2.0 issue by ${misc:Depends}
+ * debian/control: Homepage: http://www.arb-home.de/
+ * Renamed debian/po/cz.po to cs.po (Thanks to Denis Barbier
<barb...@debian.org>)
+ Closes: #325062
+ * Depends: freeglut3-dev | libglu-dev
+ * Build-Depends: libpng12-dev (Thanks to Petr Salinger
<petr.salin...@t-systems.cz>)
+ * Some patches that where necessary for building with gcc 4.0.x
+ (Thanks to Petr Salinger <petr.salin...@t-systems.cz>)
+ * arb-common: Depends: adduser
+ * arb-common.config: Removed bashism
+
+ -- Andreas Tille <ti...@debian.org> Fri, 26 Aug 2005 12:58:01 +0200
+
+arb (0.0.20050506-2) unstable; urgency=low
+
+ * Enable killing all arb processes in arb-kill
+ * Standards-Version: 3.6.2.1
+ * menu items moved (no changes in packaging, just use new debhelper)
+ * Czech debconf translation, thanks to Igor Jasa <igor.j...@seznam.cz>
+ Closes: #318442
+
+ -- Andreas Tille <ti...@debian.org> Wed, 1 Jun 2005 13:15:04 +0200
+
+arb (0.0.20050506-1) unstable; urgency=low
+
+ * New upstream version
+ * Adapted get-orig-source target to new directory layout
+ * Added French debconf template
+ Closes: #309222
+
+ -- Andreas Tille <ti...@debian.org> Mon, 30 May 2005 15:17:44 +0200
+
+arb (0.0.20050318-1) unstable; urgency=low
+
+ * New upstream snapshot
+ * Added freeglut3-dev and libglew-dev Build-dependency
+ * First official package uploaded to Debian
+ Closes: #282037
+
+ -- Andreas Tille <ti...@debian.org> Thu, 10 Mar 2005 11:23:28 +0100
+
+arb (0.0.20041206-1) unstable; urgency=low
+
+ * New upstream snapshot
+ * Reintegrate also arb-nas package because it is the main
+ Arb application according to the author. It makes no sense
+ to separate it in an extra package.
+
+ -- Andreas Tille <ti...@debian.org> Mon, 06 Dec 2004 10:48:01 +0100
+
+arb (0.0.20041112-4) unstable; urgency=low
+
+ * Group arb which has rw-permissions to arb databases
+ * Split configuration file into several pieces and megre them in
+ postinst. This enables splitting into several independent packages
+ because upstream uses a single config file
+ * Script arb-add-pt-server enables users of group arb to add
+ PT_SERVER entries to configuration files
+ * Manage users of group arb via debconf
+
+ -- Andreas Tille <ti...@debian.org> Tue, 23 Nov 2004 12:50:22 +0100
+
+arb (0.0.20041112-3) unstable; urgency=low
+
+ * Dropped package arb-extra and abr-server after discussing with the
+ authors because it does not really make sense to split this from
+ main package.
+ * Enhanced package arb-nas
+ * New package libarb with dynamic libraries
+
+ -- Andreas Tille <ti...@debian.org> Fri, 19 Nov 2004 15:56:53 +0100
+
+arb (0.0.20041112-2) unstable; urgency=low
+
+ * Compile with libmotif-dev because liblesstif has trouble with
+ some controls in the search inteface.
+ * Moved some files to the server package.
+ * Exclude arb/lib/BUGS from package because its irrelevant
+ * Move arb/lib/help_html to doc package
+ * Wrote placeholder manpage
+ * Added lintian.overrides
+ * Moved arb_tcp.dat to /etc/arb and set symlink
+
+ -- Andreas Tille <ti...@debian.org> Tue, 16 Nov 2004 18:23:59 +0100
+
+arb (0.0.20041112-1) unstable; urgency=low
+
+ * Inoffcial test release.
+
+ -- Andreas Tille <ti...@debian.org> Fri, 12 Nov 2004 13:15:16 +0100
+
Deleted: trunk/packages/arb/tags/6.0.3-2/debian/control
===================================================================
--- trunk/packages/arb/trunk/debian/control 2016-09-16 20:20:41 UTC (rev
22809)
+++ trunk/packages/arb/tags/6.0.3-2/debian/control 2016-09-17 14:44:37 UTC
(rev 22819)
@@ -1,148 +0,0 @@
-Source: arb
-Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
-Uploaders: Andreas Tille <ti...@debian.org>,
- Elmar Pruesse <el...@pruesse.net>
-Section: non-free/science
-XS-Autobuild: yes
-Priority: optional
-Build-Depends: chrpath,
- debhelper (>= 9),
- freeglut3-dev | libglu-dev,
- libbio-perl-perl,
- libglew-dev,
- libglib2.0-dev,
- libglw1-mesa-dev,
- libglu1-mesa-dev,
- libmotif-dev,
- libpng-dev,
- libtiff-dev,
- libxaw7-dev,
- libxml2-utils,
- libxpm-dev,
- lynx,
- time,
- perl-doc,
- xsltproc,
- xutils-dev
-Standards-Version: 3.9.6
-Vcs-Browser:
http://anonscm.debian.org/viewvc/debian-med/trunk/packages/arb/trunk/
-Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/arb/trunk/
-Homepage: http://www.arb-home.de/
-
-Package: arb
-Architecture: amd64 i386 kfreebsd-i386 kfreebsd-amd64
-Depends: arb-common (= ${source:Version}),
- fastdnaml,
- libarb (= ${binary:Version}),
- openssh-client,
- mafft,
- mrbayes,
- phylip,
- phyml,
- raxml,
- readseq,
- transfig,
- tree-puzzle,
- xdg-utils,
- ${misc:Depends},
- ${shlibs:Depends}
-Recommends: bioperl,
- xfig
-Suggests: arb-database,
- gnuplot,
- gv
-Description: phylogenetic sequence analysis suite - main program
- ARB is a graphical suite of tools for sequence database handling and data
- analysis. A central database of processed (aligned) sequences and any
- type of additional data linked to the sequence entries is structured
- according to phylogeny or other user-defined criteria.
- .
- The ARB project (from the Latin "arbor", a tree) is a joint initiative of
- the Lehrstuhl fuer Mikrobiologie http://www.mikro.biologie.tu-muenchen.de/
- and the Lehrstuhl fuer Rechnertechnik und Rechnerorganisation
- http://wwwbode.informatik.tu-muenchen.de/ of the Technical University
- of Munich.
-
-Package: libarb
-Architecture: amd64 i386 kfreebsd-i386 kfreebsd-amd64
-Depends: ${misc:Depends},
- ${shlibs:Depends}
-Recommends: arb
-Description: phylogenetic sequence analysis suite - libraries
- ARB is a graphical suite of tools for sequence database handling and data
- analysis. A central database of processed (aligned) sequences and any
- type of additional data linked to the sequence entries is structured
- according to phylogeny or other user-defined criteria.
- .
- The ARB project (from the Latin "arbor", a tree) is a joint initiative of
- the Lehrstuhl fuer Mikrobiologie http://www.mikro.biologie.tu-muenchen.de/
- and the Lehrstuhl fuer Rechnertechnik und Rechnerorganisation
- http://wwwbode.informatik.tu-muenchen.de/ of the Technical University
- of Munich.
- .
- This package provides the dynamic libraries which are used by ARB.
-
-Package: libarb-dev
-Architecture: amd64 i386 kfreebsd-i386 kfreebsd-amd64
-Section: non-free/libdevel
-Depends: libarb (= ${binary:Version}),
- ${misc:Depends}
-Description: phylogenetic sequence analysis suite - development files
- ARB is a graphical suite of tools for sequence database handling and data
- analysis. A central database of processed (aligned) sequences and any
- type of additional data linked to the sequence entries is structured
- according to phylogeny or other user-defined criteria.
- .
- The ARB project (from the Latin "arbor", a tree) is a joint initiative of
- the Lehrstuhl fuer Mikrobiologie http://www.mikro.biologie.tu-muenchen.de/
- and the Lehrstuhl fuer Rechnertechnik und Rechnerorganisation
- http://wwwbode.informatik.tu-muenchen.de/ of the Technical University
- of Munich.
- .
- This package provides headers and static libs needed to link against
- libARBDB.
-
-Package: arb-common
-Architecture: all
-Depends: adduser,
- arb-doc (= ${source:Version}),
- ghostscript | postscript-preview,
- gv | postscript-viewer,
- perl-modules,
- ${misc:Depends},
- ${perl:Depends}
-Recommends: arb
-Description: phylogenetic sequence analysis suite - common files
- ARB is a graphical suite of tools for sequence database handling and data
- analysis. A central database of processed (aligned) sequences and any
- type of additional data linked to the sequence entries is structured
- according to phylogeny or other user-defined criteria.
- .
- The ARB project (from the Latin "arbor", a tree) is a joint initiative of
- the Lehrstuhl fuer Mikrobiologie http://www.mikro.biologie.tu-muenchen.de/
- and the Lehrstuhl fuer Rechnertechnik und Rechnerorganisation
- http://wwwbode.informatik.tu-muenchen.de/ of the Technical University
- of Munich.
- .
- This package provides the architecture independent scripts of ARB.
-
-Package: arb-doc
-Architecture: all
-Section: non-free/doc
-Depends: ghostscript | postscript-preview,
- gv | postscript-viewer,
- ${misc:Depends}
-Suggests: arb
-Description: phylogenetic sequence analysis suite - documentation
- ARB is a graphical suite of tools for sequence database handling and data
- analysis. A central database of processed (aligned) sequences and any
- type of additional data linked to the sequence entries is structured
- according to phylogeny or other user-defined criteria.
- .
- The ARB project (from the Latin "arbor", a tree) is a joint initiative of
- the Lehrstuhl fuer Mikrobiologie http://www.mikro.biologie.tu-muenchen.de/
- and the Lehrstuhl fuer Rechnertechnik und Rechnerorganisation
- http://wwwbode.informatik.tu-muenchen.de/ of the Technical University
- of Munich.
- .
- This package provides the documentation for ARB.
Copied: trunk/packages/arb/tags/6.0.3-2/debian/control (from rev 22814,
trunk/packages/arb/trunk/debian/control)
===================================================================
--- trunk/packages/arb/tags/6.0.3-2/debian/control
(rev 0)
+++ trunk/packages/arb/tags/6.0.3-2/debian/control 2016-09-17 14:44:37 UTC
(rev 22819)
@@ -0,0 +1,148 @@
+Source: arb
+Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
+Uploaders: Andreas Tille <ti...@debian.org>,
+ Elmar Pruesse <el...@pruesse.net>
+Section: non-free/science
+XS-Autobuild: yes
+Priority: optional
+Build-Depends: chrpath,
+ debhelper (>= 9),
+ freeglut3-dev | libglu-dev,
+ libbio-perl-perl,
+ libglew-dev,
+ libglib2.0-dev,
+ libglw1-mesa-dev,
+ libglu1-mesa-dev,
+ libmotif-dev,
+ libpng-dev,
+ libtiff-dev,
+ libxaw7-dev,
+ libxml2-utils,
+ libxpm-dev,
+ lynx,
+ time,
+ perl-doc,
+ xsltproc,
+ xutils-dev
+Standards-Version: 3.9.8
+Vcs-Browser:
https://anonscm.debian.org/viewvc/debian-med/trunk/packages/arb/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/arb/trunk/
+Homepage: http://www.arb-home.de/
+
+Package: arb
+Architecture: amd64 i386 kfreebsd-i386 kfreebsd-amd64
+Depends: arb-common (= ${source:Version}),
+ fastdnaml,
+ libarb (= ${binary:Version}),
+ openssh-client,
+ mafft,
+ mrbayes,
+ phylip,
+ phyml,
+ raxml,
+ readseq,
+ transfig,
+ tree-puzzle,
+ xdg-utils,
+ ${misc:Depends},
+ ${shlibs:Depends}
+Recommends: bioperl,
+ xfig
+Suggests: arb-database,
+ gnuplot,
+ gv
+Description: phylogenetic sequence analysis suite - main program
+ ARB is a graphical suite of tools for sequence database handling and data
+ analysis. A central database of processed (aligned) sequences and any
+ type of additional data linked to the sequence entries is structured
+ according to phylogeny or other user-defined criteria.
+ .
+ The ARB project (from the Latin "arbor", a tree) is a joint initiative of
+ the Lehrstuhl fuer Mikrobiologie http://www.mikro.biologie.tu-muenchen.de/
+ and the Lehrstuhl fuer Rechnertechnik und Rechnerorganisation
+ http://wwwbode.informatik.tu-muenchen.de/ of the Technical University
+ of Munich.
+
+Package: libarb
+Architecture: amd64 i386 kfreebsd-i386 kfreebsd-amd64
+Depends: ${misc:Depends},
+ ${shlibs:Depends}
+Recommends: arb
+Description: phylogenetic sequence analysis suite - libraries
+ ARB is a graphical suite of tools for sequence database handling and data
+ analysis. A central database of processed (aligned) sequences and any
+ type of additional data linked to the sequence entries is structured
+ according to phylogeny or other user-defined criteria.
+ .
+ The ARB project (from the Latin "arbor", a tree) is a joint initiative of
+ the Lehrstuhl fuer Mikrobiologie http://www.mikro.biologie.tu-muenchen.de/
+ and the Lehrstuhl fuer Rechnertechnik und Rechnerorganisation
+ http://wwwbode.informatik.tu-muenchen.de/ of the Technical University
+ of Munich.
+ .
+ This package provides the dynamic libraries which are used by ARB.
+
+Package: libarb-dev
+Architecture: amd64 i386 kfreebsd-i386 kfreebsd-amd64
+Section: non-free/libdevel
+Depends: libarb (= ${binary:Version}),
+ ${misc:Depends}
+Description: phylogenetic sequence analysis suite - development files
+ ARB is a graphical suite of tools for sequence database handling and data
+ analysis. A central database of processed (aligned) sequences and any
+ type of additional data linked to the sequence entries is structured
+ according to phylogeny or other user-defined criteria.
+ .
+ The ARB project (from the Latin "arbor", a tree) is a joint initiative of
+ the Lehrstuhl fuer Mikrobiologie http://www.mikro.biologie.tu-muenchen.de/
+ and the Lehrstuhl fuer Rechnertechnik und Rechnerorganisation
+ http://wwwbode.informatik.tu-muenchen.de/ of the Technical University
+ of Munich.
+ .
+ This package provides headers and static libs needed to link against
+ libARBDB.
+
+Package: arb-common
+Architecture: all
+Depends: adduser,
+ arb-doc (= ${source:Version}),
+ ghostscript | postscript-preview,
+ gv | postscript-viewer,
+ perl,
+ ${misc:Depends},
+ ${perl:Depends}
+Recommends: arb
+Description: phylogenetic sequence analysis suite - common files
+ ARB is a graphical suite of tools for sequence database handling and data
+ analysis. A central database of processed (aligned) sequences and any
+ type of additional data linked to the sequence entries is structured
+ according to phylogeny or other user-defined criteria.
+ .
+ The ARB project (from the Latin "arbor", a tree) is a joint initiative of
+ the Lehrstuhl fuer Mikrobiologie http://www.mikro.biologie.tu-muenchen.de/
+ and the Lehrstuhl fuer Rechnertechnik und Rechnerorganisation
+ http://wwwbode.informatik.tu-muenchen.de/ of the Technical University
+ of Munich.
+ .
+ This package provides the architecture independent scripts of ARB.
+
+Package: arb-doc
+Architecture: all
+Section: non-free/doc
+Depends: ghostscript | postscript-preview,
+ gv | postscript-viewer,
+ ${misc:Depends}
+Suggests: arb
+Description: phylogenetic sequence analysis suite - documentation
+ ARB is a graphical suite of tools for sequence database handling and data
+ analysis. A central database of processed (aligned) sequences and any
+ type of additional data linked to the sequence entries is structured
+ according to phylogeny or other user-defined criteria.
+ .
+ The ARB project (from the Latin "arbor", a tree) is a joint initiative of
+ the Lehrstuhl fuer Mikrobiologie http://www.mikro.biologie.tu-muenchen.de/
+ and the Lehrstuhl fuer Rechnertechnik und Rechnerorganisation
+ http://wwwbode.informatik.tu-muenchen.de/ of the Technical University
+ of Munich.
+ .
+ This package provides the documentation for ARB.
Copied: trunk/packages/arb/tags/6.0.3-2/debian/patches/90_gcc6.patch (from rev
22813, trunk/packages/arb/trunk/debian/patches/90_gcc6.patch)
===================================================================
--- trunk/packages/arb/tags/6.0.3-2/debian/patches/90_gcc6.patch
(rev 0)
+++ trunk/packages/arb/tags/6.0.3-2/debian/patches/90_gcc6.patch
2016-09-17 14:44:37 UTC (rev 22819)
@@ -0,0 +1,46 @@
+Author: Sascha Steinbiss <sa...@debian.org>
+Description: fix building with GCC 6.
+
+--- a/HEADERLIBS/Makefile
++++ b/HEADERLIBS/Makefile
+@@ -7,5 +7,6 @@
+ eigen: eigen.tgz
+ tar -zxvf $<
+ touch eigen/
++ patch -p0 < return_value.patch
+
+
+--- /dev/null
++++ b/HEADERLIBS/return_value.patch
+@@ -0,0 +1,20 @@
++--- eigen/Eigen/src/Sparse/AmbiVector.h.1 2016-09-17 11:46:17.000000000
+0000
+++++ eigen/Eigen/src/Sparse/AmbiVector.h 2016-09-17 11:47:13.000000000
+0000
++@@ -44,7 +44,7 @@
++ void init(RealScalar estimatedDensity);
++ void init(int mode);
++
++- void nonZeros() const;
+++ int nonZeros() const;
++
++ /** Specifies a sub-vector to work on */
++ void setBounds(int start, int end) { m_start = start; m_end = end; }
++@@ -133,7 +133,7 @@
++
++ /** \returns the number of non zeros in the current sub vector */
++ template<typename Scalar>
++-void AmbiVector<Scalar>::nonZeros() const
+++int AmbiVector<Scalar>::nonZeros() const
++ {
++ if (m_mode==IsSparse)
++ return m_llSize;
+--- a/TEMPLATES/cxxforward.h
++++ b/TEMPLATES/cxxforward.h
+@@ -21,7 +21,7 @@
+ # if (GCC_VERSION_CODE >= 407)
+ # if (__cplusplus == 199711L)
+ # else
+-# if (__cplusplus == 201103L)
++# if (__cplusplus >= 201103L)
+ # define ARB_ENABLE_Cxx11_FEATURES
+ # else
+ # error Unknown C++ standard defined in __cplusplus
Deleted: trunk/packages/arb/tags/6.0.3-2/debian/patches/series
===================================================================
--- trunk/packages/arb/trunk/debian/patches/series 2016-09-16 20:20:41 UTC
(rev 22809)
+++ trunk/packages/arb/tags/6.0.3-2/debian/patches/series 2016-09-17
14:44:37 UTC (rev 22819)
@@ -1,8 +0,0 @@
-10_upstream_r12793__show_db_load_progress
-20_upstream_r12794__socket_permissions
-30_upstream_r12814__desktop_keywords
-40_upstream_r12815__lintian_spelling
-50_private_nameservers
-60_use_packaged_phyml
-70_skip_compler_version_check.patch
-80_enable_new_dtags.patch
Copied: trunk/packages/arb/tags/6.0.3-2/debian/patches/series (from rev 22810,
trunk/packages/arb/trunk/debian/patches/series)
===================================================================
--- trunk/packages/arb/tags/6.0.3-2/debian/patches/series
(rev 0)
+++ trunk/packages/arb/tags/6.0.3-2/debian/patches/series 2016-09-17
14:44:37 UTC (rev 22819)
@@ -0,0 +1,9 @@
+10_upstream_r12793__show_db_load_progress
+20_upstream_r12794__socket_permissions
+30_upstream_r12814__desktop_keywords
+40_upstream_r12815__lintian_spelling
+50_private_nameservers
+60_use_packaged_phyml
+70_skip_compler_version_check.patch
+80_enable_new_dtags.patch
+90_gcc6.patch
Deleted: trunk/packages/arb/tags/6.0.3-2/debian/rules
===================================================================
--- trunk/packages/arb/trunk/debian/rules 2016-09-16 20:20:41 UTC (rev
22809)
+++ trunk/packages/arb/tags/6.0.3-2/debian/rules 2016-09-17 14:44:37 UTC
(rev 22819)
@@ -1,111 +0,0 @@
-#!/usr/bin/make -f
-# debian/rules for arb using quilt
-
-# Uncomment this to turn on verbose mode.
-#export DH_VERBOSE=1
-
-pkg := $(shell dpkg-parsechangelog | sed -n 's/^Source: //p')
-pkgcom=$(pkg)-common
-pkgdoc=$(pkg)-doc
-common=debian/$(pkgcom)
-
-ARBHOME=$(CURDIR)
-
-BITARCH := $(shell dpkg-architecture -qDEB_BUILD_ARCH_BITS)
-ifeq ($(BITARCH),64)
- ARB_64:=1
-else
- ARB_64:=0
-endif
-
-LD_LIBRARY_PATH := $(ARBHOME)/lib:$(LD_LIBRARY_PATH)
-PATH := $(ARBHOME)/bin:$(PATH)
-LC_ALL := C
-
-export ARBHOME LD_LIBRARY_PATH PATH LC_ALL
-
-%:
- dh $@ --parallel
-
-config.makefile: config.makefile.template
- # ARB's build system is configured with config.makefile. This file is
- # created on the first run of make from config.makefile.template. We
- # just use sed here to set the desired parameters:
- sed -e 's/DEVELOPER := ANY/DEVELOPER := RELEASE/;'\
- -e 's/ARB_64 := 1/ARB_64 := $(ARB_64)/;'\
- -e 's/# DEBIAN := 1/DEBIAN := 1/;' \
- config.makefile.template > config.makefile
-
-override_dh_auto_build:
- $(MAKE) all
-
-override_dh_auto_configure: config.makefile
-
-override_dh_auto_clean: config.makefile
- # config.makefile is required to run make clean, hence the dependency
- # on ..._auto_configure.
- $(MAKE) clean
- rm config.makefile
- # ARB does not have "distclean" or "realclean". Remove some leftovers:
- rm -f UNIT_TESTER/Makefile.setup.local
- find -name \*.log -a ! -name phyml-manual.log -print0 | xargs -0 rm -f
- rm -f TEMPLATES/arb_build.h
-
-override_dh_install:
- # ARB has no "install" target. It has "tarfile_quick", though, which
- # creates a tarball for distribution. We build this and unpack it
- # into debian/tmp so that dh_install can pick up the files.
- make tarfile_quick
- rm -rf debian/tmp
- mkdir debian/tmp
- tar -C debian/tmp -xzf arb.tgz
- rm -rf debian/tmp-dev
- mkdir debian/tmp-dev
- tar -C debian/tmp-dev -xzf arb-dev.tgz
- rm arb.tgz arb-dev.tgz
-
- # remove some files we don't need in the package:
- rm -rf debian/tmp/lib/addlibs # external libs are packages
- rm -f debian/tmp/lib/arb_tcp_org.dat # managed in etc
- rm -f debian/tmp/lib/GPL.txt # included in copyright
- rm -f debian/tmp/lib/Makefile # spurious in upstream
- rm -f debian/tmp/arb_install.sh # no installer needed
- rm -f debian/tmp/arb_INSTALL.txt
- rm -f debian/tmp/arb_OS_X_MacPorts.txt
- rm -f debian/tmp/arb_OS_X.txt
- rm -f debian/tmp/arb_UBUNTU.txt
-
- dh_install --list-missing
-
- # the check is needed to make sure it will not fail when doing
binary-arch only builds
- if [ -e debian/$(pkgcom)/usr/lib/arb/SH/arb_create_debian_conffile ] ;
then \
- # Move SH/README :to docs \
- cp -a SH/README debian/$(pkgcom)/usr/share/doc/arb/README_SH ; \
- # Fix permission of scripts \
- chmod a+x
debian/$(pkgcom)/usr/lib/arb/SH/arb_create_debian_conffile ; \
- chmod a+x debian/$(pkgcom)/usr/lib/arb/lib/macro.head ; \
- fi
-
-override_dh_strip:
- # Fix rpath issue (once libarb is installed)
- if [ -e debian/libarb/usr/lib/arb/lib/ARB.so ] ; then \
- chrpath --delete debian/libarb/usr/lib/arb/lib/ARB.so ; \
- fi
- dh_strip
- find debian/libarb-dev -name \*.a -print0 | xargs -0 -n 1 strip
--remove-section=.comment
-
-override_dh_shlibdeps:
- dh_shlibdeps -a -l debian/libarb/usr/lib
-
-override_dh_builddeb:
- dh_builddeb -- -Z xz
-
-override_dh_fixperms:
- dh_fixperms
- -chmod 0644 debian/arb-common/etc/arb/submit/*
- -chmod 0644 debian/libarb-dev/usr/include/arb/xml.hxx
- -chmod 0755 debian/arb-common/usr/lib/arb/lib/macro.head
-
-# To update po files as recommended in po-debconf(7)
-debian/po/templates.pot: debian/arb-common.templates
- @debconf-updatepo
Copied: trunk/packages/arb/tags/6.0.3-2/debian/rules (from rev 22810,
trunk/packages/arb/trunk/debian/rules)
===================================================================
--- trunk/packages/arb/tags/6.0.3-2/debian/rules
(rev 0)
+++ trunk/packages/arb/tags/6.0.3-2/debian/rules 2016-09-17 14:44:37 UTC
(rev 22819)
@@ -0,0 +1,112 @@
+#!/usr/bin/make -f
+# debian/rules for arb using quilt
+
+# Uncomment this to turn on verbose mode.
+#export DH_VERBOSE=1
+
+pkg := $(shell dpkg-parsechangelog | sed -n 's/^Source: //p')
+pkgcom=$(pkg)-common
+pkgdoc=$(pkg)-doc
+common=debian/$(pkgcom)
+
+ARBHOME=$(CURDIR)
+
+BITARCH := $(shell dpkg-architecture -qDEB_BUILD_ARCH_BITS)
+ifeq ($(BITARCH),64)
+ ARB_64:=1
+else
+ ARB_64:=0
+endif
+
+LD_LIBRARY_PATH := $(ARBHOME)/lib:$(LD_LIBRARY_PATH)
+PATH := $(ARBHOME)/bin:$(PATH)
+LC_ALL := C
+
+export ARBHOME LD_LIBRARY_PATH PATH LC_ALL
+export DEB_CXXFLAGS_MAINT_APPEND=-std=c++98
+
+%:
+ dh $@ --parallel
+
+config.makefile: config.makefile.template
+ # ARB's build system is configured with config.makefile. This file is
+ # created on the first run of make from config.makefile.template. We
+ # just use sed here to set the desired parameters:
+ sed -e 's/DEVELOPER := ANY/DEVELOPER := RELEASE/;'\
+ -e 's/ARB_64 := 1/ARB_64 := $(ARB_64)/;'\
+ -e 's/# DEBIAN := 1/DEBIAN := 1/;' \
+ config.makefile.template > config.makefile
+
+override_dh_auto_build:
+ $(MAKE) all
+
+override_dh_auto_configure: config.makefile
+
+override_dh_auto_clean: config.makefile
+ # config.makefile is required to run make clean, hence the dependency
+ # on ..._auto_configure.
+ $(MAKE) clean
+ rm config.makefile
+ # ARB does not have "distclean" or "realclean". Remove some leftovers:
+ rm -f UNIT_TESTER/Makefile.setup.local
+ find -name \*.log -a ! -name phyml-manual.log -print0 | xargs -0 rm -f
+ rm -f TEMPLATES/arb_build.h
+
+override_dh_install:
+ # ARB has no "install" target. It has "tarfile_quick", though, which
+ # creates a tarball for distribution. We build this and unpack it
+ # into debian/tmp so that dh_install can pick up the files.
+ make tarfile_quick
+ rm -rf debian/tmp
+ mkdir debian/tmp
+ tar -C debian/tmp -xzf arb.tgz
+ rm -rf debian/tmp-dev
+ mkdir debian/tmp-dev
+ tar -C debian/tmp-dev -xzf arb-dev.tgz
+ rm arb.tgz arb-dev.tgz
+
+ # remove some files we don't need in the package:
+ rm -rf debian/tmp/lib/addlibs # external libs are packages
+ rm -f debian/tmp/lib/arb_tcp_org.dat # managed in etc
+ rm -f debian/tmp/lib/GPL.txt # included in copyright
+ rm -f debian/tmp/lib/Makefile # spurious in upstream
+ rm -f debian/tmp/arb_install.sh # no installer needed
+ rm -f debian/tmp/arb_INSTALL.txt
+ rm -f debian/tmp/arb_OS_X_MacPorts.txt
+ rm -f debian/tmp/arb_OS_X.txt
+ rm -f debian/tmp/arb_UBUNTU.txt
+
+ dh_install --list-missing
+
+ # the check is needed to make sure it will not fail when doing
binary-arch only builds
+ if [ -e debian/$(pkgcom)/usr/lib/arb/SH/arb_create_debian_conffile ] ;
then \
+ # Move SH/README :to docs \
+ cp -a SH/README debian/$(pkgcom)/usr/share/doc/arb/README_SH ; \
+ # Fix permission of scripts \
+ chmod a+x
debian/$(pkgcom)/usr/lib/arb/SH/arb_create_debian_conffile ; \
+ chmod a+x debian/$(pkgcom)/usr/lib/arb/lib/macro.head ; \
+ fi
+
+override_dh_strip:
+ # Fix rpath issue (once libarb is installed)
+ if [ -e debian/libarb/usr/lib/arb/lib/ARB.so ] ; then \
+ chrpath --delete debian/libarb/usr/lib/arb/lib/ARB.so ; \
+ fi
+ dh_strip
+ find debian/libarb-dev -name \*.a -print0 | xargs -0 -n 1 strip
--remove-section=.comment
+
+override_dh_shlibdeps:
+ dh_shlibdeps -a -l debian/libarb/usr/lib
+
+override_dh_builddeb:
+ dh_builddeb -- -Z xz
+
+override_dh_fixperms:
+ dh_fixperms
+ -chmod 0644 debian/arb-common/etc/arb/submit/*
+ -chmod 0644 debian/libarb-dev/usr/include/arb/xml.hxx
+ -chmod 0755 debian/arb-common/usr/lib/arb/lib/macro.head
+
+# To update po files as recommended in po-debconf(7)
+debian/po/templates.pot: debian/arb-common.templates
+ @debconf-updatepo
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