CWL workflow as Debian package

2017-08-11 Thread Steffen Möller
Hello, I had an exchange with Stian yesterday about what CWL workflow of his database he would propose to use as an experience-gathering example. He proposed the GATK workflow by Farah Zaib Khan et al. for being good to cite about workflows and reproducibility.

Changes to the imagej package and please update

2017-08-11 Thread Carnë Draug
Hi I am now packaging an ImageJ plugin that uses maven as build system. For that, it makes use of the ij.jar in Maven Central and the related pom.xml file which is part of ImageJA [1]. In addition, the plugin is a Java library on its own right and as such has its javadocs which are dependent on

What's the reason to use legacy minia instead of current version?

2017-08-11 Thread Andreas Tille
Hi, since Nadiya is working on a test for minia I was checking the status. According to the homepage[1] consideres the packaged version 1.6906 legacy code. There are several new releases available at Githib[2]. Is there any good reason to stick with the legacy code rather than packaging the

Re: Changes to the imagej package and please update

2017-08-11 Thread Andreas Tille
Hi Carnë I just run uscan + gbp import-orig and pushed. Feel free to do this yourself in case of the problems you have described below. Or tell me if I missed the point and I should do more. Kind regards Andreas. On Fri, Aug 11, 2017 at 07:32:30PM +0100, Carnë Draug wrote: > Hi >