Fwd: Bug#954777: ITP: augur -- pipeline components for real-time virus analysis

Hi folks, I added this COVID-19 relevant ITP. Please give more input which of our packages are relevant in this field. Kind regards Andreas. - Forwarded message from Andreas Tille - Date: Mon, 23 Mar 2020 12:16:05 +0100 From: Andreas Tille To: Debian Bug Tracking System

https://github.com/nf-core/covid19 - nextflow pipeline

Dear all, With the enormous difficulties to get bcbio into our distribution (a considderable list of sequential dependencies for nim, java libraries, golang-bio, sigh) I also had an eye on nf-core and their nextflow-based workflows. I think I uploaded the one or other package from their

Re: Help with autopkgtest for package andi

Hi Samyak, By accident I noticed that you opened a pull request on Salsa. Note that most communication in this team happens via mail. Thus, your changes flew under the radar. The update to v0.13 looks fine to me. You can push that directly to the repository and ask for a sponsorship on the

Re: Debian Med Covid special?

[Please do not communicate in private - I've CCed Debian Med list] Hi Ben, On Mon, Mar 23, 2020 at 02:20:39PM +0100, Ben Tris wrote: > > We URGENTLY NEED more input about what packages are really relevant for > > COVID-19 and what not! > > Do you mean input from the teams packages or other?

Re: https://github.com/nf-core/covid19 - nextflow pipeline

On 23/03/2020 14:38, Steffen Möller wrote: Dear all, With the enormous difficulties to get bcbio into our distribution (a considderable list of sequential dependencies for nim, java libraries, golang-bio, sigh) I also had an eye on nf-core and their nextflow-based workflows. I think I

Re: Introduction: Jun Aruga

> > > I will be attending again, yes! I haven't decided on a particular > > > proposal yet. Do you have any particular ideas? > > I'm currently waiting for getting the money back for my flight to > FOSSASIA in Singapore. I intended to go there and by doing so consuming > my "Debian vacation" for

Re: Some packages for the CoViD-19 Biohackathon

Hi again, On Mon, Mar 23, 2020 at 09:19:09PM +0100, Andreas Tille wrote: > Hi Pranav, > > On Mon, Mar 23, 2020 at 09:24:17PM +0530, Pranav Ballaney wrote: > > Hi Andreas, > > I shared the email thread about the biohackathon with a friend of mine, > > Shruti Sridhar, and she has put together the

Re: Debian Med Covid special?

I am bussy making a list, but I want to let know this. Fastqc is on the debian med package list (https://tracker.debian.org/pkg/fastqc) There are more, all seem gpl3 and later: https://www.bioinformatics.babraham.ac.uk/projects/index.html On 23-03-20 15:37, Andreas Tille wrote: > [Please do