Re: SMILE

2002-04-29 Thread Aaron M. Ucko
/smile_english.html. Perhaps these were added since you last looked at the page. -- Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org) Finger [EMAIL PROTECTED] (NOT a valid e-mail address) for more info. -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of unsubscribe

Re: Taking over orphaned biology packages

2003-04-14 Thread Aaron M. Ucko
Andreas Tille [EMAIL PROTECTED] writes: On 12 Apr 2003, Aaron M. Ucko wrote: http://lists.debian.org/debian-devel-changes/2003/debian-devel-changes-200304/msg00824.html Many thanks to Mario. Indeed. I just ask on Debian-Med with this mail (sorry for quoting you in a public list, but I

Re: Bug#221847: ITP: e-PCR -- [Biology] Tool to test a DNA sequence for the presence of sequence tagged sites

2003-11-26 Thread Aaron M. Ucko
form package is a/an description. I'd suggest something like Description: tool to test a DNA sequence for sequence tagged sites [Biology] (I realize that [Biology] has typically gone at the beginning, but I'd have to say that that's not really the most appropriate place for it.) -- Aaron M. Ucko

Re: Debian software which allows searching nucleotide / amino acid sequence and showing intron/exon boundries or begin/termination of translations

2005-06-30 Thread Aaron M. Ucko
on a given sequence. -- Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org) Finger [EMAIL PROTECTED] (NOT a valid e-mail address) for more info. -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of unsubscribe. Trouble? Contact [EMAIL PROTECTED]

Re: Can a DD build and upload EMBOSS for AMD64 ?

2007-04-26 Thread Aaron M. Ucko
[EMAIL PROTECTED] (Aaron M. Ucko) writes: Sure, no problem; I've launched a build on my home machine, and will upload the resulting binaries when it completes. The build completed, so I'll sign and upload the binaries when I get home. (I don't have access to my key at present

Re: New pacakge containing binaries with same name as some from the packages cons, pscan and hsffig.

2007-05-01 Thread Aaron M. Ucko
of these first two. -- Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org) Finger [EMAIL PROTECTED] (NOT a valid e-mail address) for more info. -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of unsubscribe. Trouble? Contact [EMAIL PROTECTED]

Re: Packaging EMBOSS and data for EMBOSS

2007-05-03 Thread Aaron M. Ucko
that amd64 systems look for system libraries (only) in /usr/lib64; I excised the relevant code. -- Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org) Finger [EMAIL PROTECTED] (NOT a valid e-mail address) for more info. -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject

Re: Build-dependency for rasmol: cbflib

2008-03-31 Thread Aaron M. Ucko
possible to write I'd say supports rather than encourages, as the relevant option (mergeWithUpstream) is off by default. Some teams insist on using it for their shared repositories, but that's a separate matter. -- Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org) http://www.mit.edu

Re: Getting -m64 at the right time and place.

2008-11-15 Thread Aaron M. Ucko
Charles Plessy [EMAIL PROTECTED] writes: Maq is likely to have to access files bigger than 2Gb sometimes, so I probably should not remove -D_FILE_OFFSET_BITS=64. Indeed. Would the following patch make sense? Yes, looks reasonable to me. -- Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko

Re: ncbi-tools onder Debian Med group maintenance?

2009-09-28 Thread Aaron M. Ucko
is that I have been using Debhelper 7 whereas it still recommends version 5. Is that likely to be an issue? (FWIW, lenny has 7.0.15.) -- Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org) http://www.mit.edu/~amu/ | http://stuff.mit.edu/cgi/finger/?...@monk.mit.edu -- To UNSUBSCRIBE

Re: ncbi-tools onder Debian Med group maintenance?

2009-09-29 Thread Aaron M. Ucko
Nelson A. de Oliveira nao...@gmail.com writes: See the package git-svn Thanks for the suggestion! I found it already, but I wasn't sure whether a different tool (tailor?) would be more appropriate for one-shot conversions. -- Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org

Re: Debian Med Policy

2009-09-29 Thread Aaron M. Ucko
cdbs extensively before migrating to dh.) Thanks! -- Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org) http://www.mit.edu/~amu/ | http://stuff.mit.edu/cgi/finger/?...@monk.mit.edu -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of unsubscribe

Re: ncbi-tools onder Debian Med group maintenance?

2009-10-13 Thread Aaron M. Ucko
a plausible-looking draft Git repository, but am holding off on pushing it anywhere public until I get a chance to sanity check it further. -- Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org) http://www.mit.edu/~amu/ | http://stuff.mit.edu/cgi/finger/?...@monk.mit.edu -- To UNSUBSCRIBE

Re: ncbi-tools under Debian Med group maintenance?

2010-08-30 Thread Aaron M. Ucko
u...@debian.org (Aaron M. Ucko) writes: lately.) I now have a plausible-looking draft Git repository, but am holding off on pushing it anywhere public until I get a chance to sanity check it further. This review ended up falling by the wayside for far longer than I intended, for which I must

Re: ncbi-tools under Debian Med group maintenance?

2010-08-30 Thread Aaron M. Ucko
last time. ;-) So asking for a freeze exceptions seems to make sense. Thanks for supporting the idea. -- Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org) http://www.mit.edu/~amu/ | http://stuff.mit.edu/cgi/finger/?...@monk.mit.edu -- To UNSUBSCRIBE, email to debian-med-requ

Re: ncbi-tools under Debian Med group maintenance?

2010-08-31 Thread Aaron M. Ucko
. The new release includes BLAST 2.2.24, so that report definitely also argues in favor of trying to get it into Squeeze. -- Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org) http://www.mit.edu/~amu/ | http://stuff.mit.edu/cgi/finger/?...@monk.mit.edu -- To UNSUBSCRIBE, email

Re: ncbi-tools under Debian Med group maintenance?

2010-09-03 Thread Aaron M. Ucko
u...@debian.org (Aaron M. Ucko) writes: No, I hadn't; thanks for the pointer. The new release includes BLAST 2.2.24, so that report definitely also argues in favor of trying to get it into Squeeze. At any rate, I've now completed and fully published my work on the new upstream release

Bug#596733: unblock: ncbi-tools6/6.1.20100808-1 (as -2)

2010-09-13 Thread Aaron M. Ucko
formatting. * debian/control: - bump dpkg-dev build-dep to = 1.15.7 for dpkg-buildflags. - Standards-Version: 3.9.1 (already compliant). - note switch to git-mediated Debian-Med team maintenance. -- Aaron M. Ucko u...@debian.org Fri, 03 Sep 2010 17:43:17 -0400 In particular, please

Re: blast+ packaging

2011-04-27 Thread Aaron M. Ucko
. Likewise, as Andreas noted. Thanks! -- Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org) http://www.mit.edu/~amu/ | http://stuff.mit.edu/cgi/finger/?a...@monk.mit.edu -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact

Re: blast+ packaging

2011-05-06 Thread Aaron M. Ucko
+ binaries. -- Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org) http://www.mit.edu/~amu/ | http://stuff.mit.edu/cgi/finger/?a...@monk.mit.edu -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org

Re: blast+ packaging

2011-05-07 Thread Aaron M. Ucko
, perhaps) containing such symlinks, which users could then add to their PATHs as desired. -- Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org) http://www.mit.edu/~amu/ | http://stuff.mit.edu/cgi/finger/?a...@monk.mit.edu -- To UNSUBSCRIBE, email to debian-med-requ

Re: blast+ packaging

2011-05-20 Thread Aaron M. Ucko
Olivier Sallou olivier.sal...@irisa.fr writes: did you had time to look at ncbi-blast+ package before pushing it ? I'm terribly sorry, but I still haven't had time. Perhaps this weekend. -- Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org) http://www.mit.edu/~amu/ | http

Re: blast+ packaging

2011-05-22 Thread Aaron M. Ucko
, and would like to thank you for taking the lead here. -- Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org) http://www.mit.edu/~amu/ | http://stuff.mit.edu/cgi/finger/?a...@monk.mit.edu -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of unsubscribe

Re: blast+ packaging

2011-05-27 Thread Aaron M. Ucko
on the package; there are just a lot of details to packaging anything. -- Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org) http://www.mit.edu/~amu/ | http://stuff.mit.edu/cgi/finger/?a...@monk.mit.edu Index: debian/control

trouble committing to svn.d.o/svn/debian-med

2011-05-28 Thread Aaron M. Ucko
(800), whereas only members of groups 40063 and 80063 can write to the repository. Could you please take a look? Thanks! -- Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org) http://www.mit.edu/~amu/ | http://stuff.mit.edu/cgi/finger/?a...@monk.mit.edu -- To UNSUBSCRIBE, email

Re: blast+ packaging

2011-05-29 Thread Aaron M. Ucko
for the explanation; I've kept the split. -- Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org) http://www.mit.edu/~amu/ | http://stuff.mit.edu/cgi/finger/?a...@monk.mit.edu -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of unsubscribe. Trouble

Re: blast+ packaging

2011-05-30 Thread Aaron M. Ucko
out the problem and sorry you ran into it. -- Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org) http://www.mit.edu/~amu/ | http://stuff.mit.edu/cgi/finger/?a...@monk.mit.edu -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of unsubscribe. Trouble

Re: BLAST+ speed build issues

2011-08-17 Thread Aaron M. Ucko
) rather than pretending to be coinstallable. -- Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org) http://www.mit.edu/~amu/ | http://stuff.mit.edu/cgi/finger/?a...@monk.mit.edu -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of unsubscribe. Trouble

Re: BLAST+ speed build issues

2011-08-18 Thread Aaron M. Ucko
; I've asked my usual contact on the BLAST team whether he has any concerns about such an approach. -- Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org) http://www.mit.edu/~amu/ | http://stuff.mit.edu/cgi/finger/?a...@monk.mit.edu -- To UNSUBSCRIBE, email to debian-med-requ

Re: Bug#642991: ncbi-blast+: should notify why some tools are missing

2011-09-30 Thread Aaron M. Ucko
blast2 and ncbi-blast+ packages coexist without complications. -- Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org) http://www.mit.edu/~amu/ | http://stuff.mit.edu/cgi/finger/?a...@monk.mit.edu -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject

Re: Restricting citation information to single binary packages?

2012-03-30 Thread Aaron M. Ucko
, please note that the BLAST engine is a library, and available to other packages; for instance, I think Sequin (from the ncbi-tools-x11 package) may support running BLAST internally. Thanks for asking! -- Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org) http://www.mit.edu/~amu/ | http

Re: Confused - question about NCBI Tools++

2012-08-03 Thread Aaron M. Ucko
, the whole C++ Toolkit has proven too unwieldy to package properly, so we've just packaged the BLAST+ subset so far. Sorry for any resulting inconvenience. -- Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org) http://www.mit.edu/~amu/ | http://stuff.mit.edu/cgi/finger/?a...@monk.mit.edu

Re: ncbi-blast+ hardening-no-fortify-functions

2012-09-21 Thread Aaron M. Ucko
Hi, Olivier. This is a false alarm, which you can safely ignore; blhc confirms that all is well: $ blhc --ignore-flag -g --ignore-flag -O2 ncbi-blast+_2.2.26-3_amd64.build LDFLAGS missing (-fPIE -pie): /usr/bin/g++ -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O

Re: Bug#688684: [Debian-med-packaging] Bug#688684: ncbi-blast+: trying to overwrite '/usr/bin/seedtop', which is also in package blast2 1:2.2.26.20120620-2

2012-09-25 Thread Aaron M. Ucko
that to be too much of a problem. If it is, perhaps ncbi-blast+ could divert blast2's seedtop and substitute a script that would figure out which version to launch, depending on whether it saw long or short option names. -- Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org) http://www.mit.edu

Re: Bug#673441: GCC crash while compiling on Sparc

2012-09-27 Thread Aaron M. Ucko
cc1plus. ncbi-blast+ will need a new upload soon anyway to address other bugs, so there's probably no point in requesting a give-back. Sorry to bother you! -- Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org) http://www.mit.edu/~amu/ | http://stuff.mit.edu/cgi/finger/?a...@monk.mit.edu

Re: [Debian-med-packaging] Bug#688661: ncbi-blast+: FTBFS on arm* or mips*: no NCBI_INT8_TYPE

2012-10-05 Thread Aaron M. Ucko
Olivier Sallou olivier.sal...@irisa.fr writes: the patch you provided for arm/mips is not enough. Please try actually enabling it in debian/patches/series. -- Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org) http://www.mit.edu/~amu/ | http://stuff.mit.edu/cgi/finger

Re: New version of ncbi-blast+

2014-06-07 Thread Aaron M. Ucko
with fortification, but I don't have time to look into that option at the moment. -- Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org) http://www.mit.edu/~amu/ | http://stuff.mit.edu/cgi/finger/?a...@monk.mit.edu -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject

Re: Fwd: Fwd: [Debian-med-packaging] Bug#753190: ncbi-blast+: FTBFS: shared_ptr_base.h:479:39: error: must #include typeinfo before using typeid

2014-06-30 Thread Aaron M. Ucko
, but won't be able to sign an upload until this evening. At any rate, I will push the necessary change upstream. -- Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org) http://www.mit.edu/~amu/ | http://stuff.mit.edu/cgi/finger/?a...@monk.mit.edu -- To UNSUBSCRIBE, email to debian-med-requ

Re: Fwd: Fwd: [Debian-med-packaging] Bug#753190: ncbi-blast+: FTBFS: shared_ptr_base.h:479:39: error: must #include typeinfo before using typeid

2014-07-01 Thread Aaron M. Ucko
Aaron M. Ucko a...@alum.mit.edu writes: shortly, but won't be able to sign an upload until this evening. FTR, this upload accidentally slipped by a day, but has occurred, with good autobuilder results. -- Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org) http://www.mit.edu/~amu

Bug#810949: ITP: ncbi-entrez-direct -- NCBI Entrez utilities on the command line

2016-01-13 Thread Aaron M. Ucko
Package: wnpp Severity: wishlist Owner: "Aaron M. Ucko" <u...@debian.org> * Package name: ncbi-entrez-direct Version : 3.60 Upstream Author : Jonathan Kans <k...@ncbi.nlm.nih.gov> * URL : http://www.ncbi.nlm.nih.gov/books/NBK179288 * License

Re: Please finalise new version of ncbi-blast+ since build system is quite tricky

2016-04-12 Thread Aaron M. Ucko
ver a "build" directory in the source tree, just in the build tree (which I think we've been naming BUILD). -- Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org) http://www.mit.edu/~amu/ | http://stuff.mit.edu/cgi/finger/?a...@monk.mit.edu

Re: [ncbi-blast+] 01/01: upload upstream release 2.3.0

2016-08-03 Thread Aaron M. Ucko
oad 2.4.0 tonight. For the record, the immediate problem turned out to be fallout from missing https://www.ncbi.nlm.nih.gov/viewvc/v1?view=revision=72513, which evidently didn't make it into the 2.4.0 release branch. -- Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org) http://ww

Re: [GSoC] tests for ncbi-tools6: Anybody able to give hints what tools might deserve testing?

2016-08-08 Thread Aaron M. Ucko
such awkward to test automatically. However, some of their functionality is also available from programs in ncbi-tools-bin (or sometimes blast2). As for blast2, perhaps it would be possible to adapt the automated tests recently added to ncbi-blast+. Thanks for asking! -- Aaron M. Ucko,

Re: New version of ncbi-blast+ available

2016-08-02 Thread Aaron M. Ucko
ecreate them locally? -- Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org) http://www.mit.edu/~amu/ | http://stuff.mit.edu/cgi/finger/?a...@monk.mit.edu

Re: Name space conflicts

2017-01-16 Thread Aaron M. Ucko
(over /usr/bin/efetch) is with acedb-other, which is also from debian-med. I've prepared local drafts of argument-analyzing scripts and just need to test and upload them. I have both today and Friday off from work, so should be able to find time to take care of that this week. -- Aaron M. Uc

Re: New version of ncbi-blast+ available

2016-12-08 Thread Aaron M. Ucko
ke another look. -- Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org) http://www.mit.edu/~amu/ | http://stuff.mit.edu/cgi/finger/?a...@monk.mit.edu

Re: New version of ncbi-blast+ available

2016-12-05 Thread Aaron M. Ucko
e sufficient for most purposes. That said, I did try to take care of both packages tonight, but wound up only having time for ncbi-blast+; I plan to follow up with ncbi-tools6 tomorrow. (I also remain confident that it won't need to go through NEW, though ncbi-blast+ might.) -- Aaron M. Ucko,

Re: New version of ncbi-blast+ available

2016-12-05 Thread Aaron M. Ucko
ls6 should be fine. -- Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org) http://www.mit.edu/~amu/ | http://stuff.mit.edu/cgi/finger/?a...@monk.mit.edu

Re: Status update

2016-12-02 Thread Aaron M. Ucko
anything yet in case I need to rework any changes first. -- Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org) http://www.mit.edu/~amu/ | http://stuff.mit.edu/cgi/finger/?a...@monk.mit.edu

Re: New version of ncbi-blast+ available

2016-12-07 Thread Aaron M. Ucko
"Aaron M. Ucko" <u...@debian.org> writes: > to follow up with ncbi-tools6 tomorrow. Done as planned, so we're now pretty much set, though I'll want to make one more ncbi-blast+ upload to disable a strict GNU TLS version check, as already done for ncbi-tools6: https://anon

Re: December

2017-12-01 Thread Aaron M. Ucko
though Cn3D++ comes from the same overarching tree (NCBI's C++ Toolkit) as BLAST+, it is a separate project. The packaging work done for BLAST+ would make for a decent starting point, though. Meanwhile, what ever happened with https://bugs.debian.org/682042 ? ;-) -- Aaron M. Ucko, KB1CJC (a

Re: Bug#879619: Autopkgtest for ncbi-tools6

2018-04-05 Thread Aaron M. Ucko
directory. What do you think about the whole test at this stage? Great, thanks! I suppose you could check for specific output contents (via grep, not necessarily 100% identity), but this otherwise all looks good, and is a clear improvement over not having autopkgtests at all. -- Aaron M.

Re: Bug#879619: Autopkgtest for ncbi-tools6

2018-04-12 Thread Aaron M. Ucko
Liubov Chuprikova <chuprikov...@gmail.com> writes: > On Thu, 12 Apr 2018 at 17:30 Aaron M. Ucko <u...@debian.org> wrote: > >> >> That said, you did catch a bug in taxblast; I'll push a fix this >> evening. (The binary will still require a network connect

Re: Bug#879619: Autopkgtest for ncbi-tools6

2018-04-12 Thread Aaron M. Ucko
n! That said, you did catch a bug in taxblast; I'll push a fix this evening. (The binary will still require a network connection, just actually be able to use it now). -- Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org) http://www.mit.edu/~amu/ | http://stuff.mit.edu/cgi/finger/?a...@monk.mit.edu

Bug#896712: ITP: golang-github-dataence-porter2 -- Native Go English Porter2 stemmer

2018-04-23 Thread Aaron M. Ucko
Package: wnpp Severity: wishlist Owner: "Aaron M. Ucko" <u...@debian.org> * Package name: golang-github-dataence-porter2(-dev) Version : 0.0~git20150829.0.56e4718 Upstream Author : Jian Zhen / Dataence, LLC * URL : https://github.com/dataence/p

Re: Bug#896712: ITP: golang-github-dataence-porter2 -- Native Go English Porter2 stemmer

2018-04-24 Thread Aaron M. Ucko
reached you first. I'm now openly copying both specialized lists, and leaving -devel off. > I am not a mod, so don't worry all too much about me. I appreciate your feedback regardless. -- Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org) http://www.mit.edu/~amu/ | http

Re: Bug#879619: Autopkgtest for ncbi-tools6

2018-04-16 Thread Aaron M. Ucko
to > sponsor the upload. If you need any additional information about *taxblast*, > I'll be happy to provide it. OK, thanks. I'm not sure any of these is critical to test, but some should be relatively straightforward to work in at this point, and as noted I'm not quite ready to upl

Re: ncbi-tools6 does not simply build via gbp due to changed files

2018-03-27 Thread Aaron M. Ucko
art of preparing to make an upload, but redirection does certainly still work for now. I do share your frustration that the anonscm alias didn't offer as much permanance as promised. -- Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org) http://www.mit.edu/~amu/ | http://stuff.mit.edu/cgi/finger/?a...@monk.mit.edu

Re: Bug#879619: Autopkgtest for ncbi-tools6

2018-03-27 Thread Aaron M. Ucko
kage > dependencies on my computer.. Thanks for adding these tests, and sorry you ran into dpkg errors along the way! Please let me know if you have usage questions about any of this package's tools. -- Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org) http://www.mit.edu/~amu

Re: Bug#879619: Autopkgtest for ncbi-tools6

2018-03-29 Thread Aaron M. Ucko
g echo statement.) Спасибо! -- Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org) http://www.mit.edu/~amu/ | http://stuff.mit.edu/cgi/finger/?a...@monk.mit.edu

Re: Bug#879619: Autopkgtest for ncbi-tools6

2018-04-03 Thread Aaron M. Ucko
h a file by any program? Just by a generic text editor, sorry. However, this package does already ship a macro file you may be able to test with: /usr/share/ncbi/data/autofix.prt. Thanks! -- Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org) http://www.mit.edu/~amu/ | http://stuff.mit.edu/cgi/finger/?a...@monk.mit.edu

Re: ncbi-tools6 does not simply build via gbp due to changed files

2018-03-25 Thread Aaron M. Ucko
gh, since I don't have time to split out individual patches at the moment. In the long term, how do you feel about gbp-pq(1) as a compromise between our preferred approaches? BTW, I see that the repository has moved to Salsa (thanks!) Are you planning to update the Vcs-* fields accordingly? --