Hi Andreas,
On 05/05/2018 05:41 PM, Andreas Tille wrote:
Hi Benjamin,
On Sat, May 05, 2018 at 02:56:56PM +0200, Benjamin Redelings wrote:
uscan --verbose --force-download
gbp import-orig --pristine-tar bali-phy_3.1+dfsg.orig.tar.xz
since the pristine-tar branch was not populated
OK, I figured this out, now that I can debug the pbuilder fails. Thanks!
On 05/05/2018 08:13 PM, Andreas Tille wrote:
On Sat, May 05, 2018 at 04:41:59PM +0200, Andreas Tille wrote:
FileNotFoundError: [Errno 2] No such file or directory:
'/build/bali-phy-3.1+dfsg/tests/run-tests.py':
Hi Andreas,
On 05/04/2018 09:14 AM, Andreas Tille wrote:
Hi Benjamin,
I've done
uscan --verbose --force-download
gbp import-orig --pristine-tar bali-phy_3.1+dfsg.orig.tar.xz
since the pristine-tar branch was not populated. Either you forgot the
import-orig step or you did not
Forgot to Cc list.
Forwarded Message
Subject:New bali-phy version
Date: Thu, 3 May 2018 17:23:38 -0400
From: Benjamin Redelings <benjamin.redeli...@gmail.com>
To: Andreas Tille <andr...@an3as.eu>
Hi Andreas,
I've updated the bali-phy r
Hi Andreas,
I pushed a new version of bali-phy (version 3.3) to the salsa repo. The
debian build process hasn't changed this round, but the package has some
nice improvements. Can you please upload it for me?
-BenRI
Hi,
I see that many bioinformatics programs such as muscle, mafft, and
fsa (alignment) and mrbayes, beast-mcmc, and phyml (phylogenetics), etc.
are maintained by the "Debian Med Packaging Team". I uploaded a package
for bali-phy (which does simultaneous alignment) to mentors.debian.net.
Hi,
I've created a new project on salsa for the software 'bali-phy'.
It builds for me with gbp without any lintian warnings, and the
installed packages seem to work. Comments?
-BenRI
Hi,
On 03/08/2018 11:27 AM, Andreas Tille wrote:
- a lot of people are going to show up running ubuntu. What might you all
recommend? In theory ubuntu people could add debian testing to
`apt/sources.list.d`.
I do not think that it is a good idea to mix Debian testing with Ubuntu
Hi Andreas,
On 03/09/2018 06:20 PM, Andreas Tille wrote:
Hi again,
On Fri, Mar 09, 2018 at 10:42:11PM +0100, Andreas Tille wrote:
I wondered about this. I was unsure if /usr/share/doc/ is a good place for
non-Debian systems, so I did not change the upstream default. But for
Debian it is
Hi Andreas,
On 03/08/2018 11:41 PM, Andreas Tille wrote:
Hi Benjamin,
thanks for packaging bali-phy which looks quite good. You even added
autopkgtest which is excellent work.
On Thu, Mar 08, 2018 at 05:44:59PM -0500, Benjamin Redelings wrote:
I've created a new project on salsa
Hi,
I'm Ben Redelings (http://ben-redelings.org) and I've recently
joined debian-med on salsa. I've been thinking about uploading some new
phylogenetics / bioinformatics software, partly so that I can tell
students in workshops "just type sudo apt-get install if you
are running debian
Forgot to Cc this to the list.
Forwarded Message
Subject:Re: Help with new package version?
Date: Fri, 20 Apr 2018 08:44:23 -0400
From: Benjamin Redelings <benjamin.redeli...@gmail.com>
To: Andreas Tille <andr...@an3as.eu>
Hi Andreas,
Sorry f
Hi,
I've released a new version 3.0.3 of bali-phy, and I realize that I
don't understand how to manage the salsa repo using git. I've tried
something like this (mostly locally), but I'm pretty sure there is a way
of doing this with gbp that is recommended instead:
git fetch upstream
Hi,
My software bali-phy is having build failures on amd64 with hardware
floating-point (armhf) that don't occur on x86-64, and seemingly do not
occur with software floating-point (armel).
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=918047
The bug seems to come from NaN's getting
Hi Andreas,
I pushed a new version of bali-phy (version 3.4) to the salsa repo. Can
you please upload it for me?
Thanks!
-BenRI
Hi Andreas,
I pushed bali-phy version 3.4.1 to the salsa repo. (This version fixes
some bugs in version 3.4.0 that are important for usability, but is not
a major update.) In any case, can you please upload it for me?
Thank you!
-BenRI
1/22/19 11:28 AM, Benjamin Redelings wrote:
Hi Andreas,
I pushed bali-phy version 3.4.1 to the salsa repo. (This version
fixes some bugs in version 3.4.0 that are important for usability, but
is not a major update.) In any case, can you please upload it for me?
Thank you!
-BenRI
Hi Andreas,
I pushed a new version to salsa. Could you upload this for me if it
seems OK?
-BenRI
On 2/5/21 7:26 PM, Benjamin Redelings wrote:
Hi,
I'm getting ready to upload changes for bali-phy version 3.6.0 to the
repo on salsa. Building the new version was pretty smooth, but I got
Hi Andreas,
Thanks for the feedback! I pushed my changes to salsa, and I think I
have incorporated all of your feedback except about the empty directory.
I: bali-phy: package-contains-empty-directory
usr/share/doc/bali-phy/examples/models/regresssion/
Well, is this really intended to have
Hi,
Thanks for the advice!
On 3/29/23 3:04 PM, Andreas Tille wrote:
Hi Benjamin,
Am Tue, Mar 28, 2023 at 07:04:52AM +0200 schrieb Pierre Gruet:
Probably you wouold like to do something as in
https://sources.debian.org/src/gedit-plugins/44.1-2/debian/watch/?hl=2#L2
for the
Hi,
I'd like to upload a new version 4.0-beta2 of bali-phy. It decreases
memory usage over the existing 3.6.1 by > 20fold in some cases.
The first question I have is about using uscan with the "-beta2"
suffix. I hacked the debian/watch file to make uscan recognize the tag
name, but now its
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