On Tue, 2023-05-09 at 22:24 +0200, Pierre Gruet wrote:
> Hi Andreas,
>
> Le 09/05/2023 à 18:36, Andreas Tille a écrit :
> > Hi Pierre,
> >
> > Am Mon, May 08, 2023 at 10:50:54PM +0200 schrieb Pierre Gruet:
> > >
> > > It is very nice to hear from you on Nextflow, this is a
> > > motivation
Hi Andreas,
Le 09/05/2023 à 18:36, Andreas Tille a écrit :
Hi Pierre,
Am Mon, May 08, 2023 at 10:50:54PM +0200 schrieb Pierre Gruet:
It is very nice to hear from you on Nextflow, this is a motivation booster
for the packaging!
+1
I have indeed packaged many dependencies, and if I
Hi Pierre,
Am Mon, May 08, 2023 at 10:50:54PM +0200 schrieb Pierre Gruet:
>
> It is very nice to hear from you on Nextflow, this is a motivation booster
> for the packaging!
+1
> I have indeed packaged many dependencies, and if I remember correctly I had
> two issues at this step:
> - kryo
Hi Steffen,
Le 05/05/2023 à 22:16, Steffen Möller a écrit :
Hello,
I must admit that I am rather impressed - a series of images were
auto-downloaded to function together with singularity and this then worked on a
test data collection of the workflow. So, with singularity (or docker) in
> Gesendet: Montag, 08. Mai 2023 um 08:45 Uhr
> Von: "Charles Plessy"
> An: debian-med@lists.debian.org
> Betreff: Re: Nextflow - have just used it on our HPC cluster and liked it
>
> Hi Steffen and everybody,
>
> I also use Nextflow at work, and in
On 08/05/2023 07:45, Charles Plessy wrote:
[...] In bioconda
you have no idea whether sed is from GNU of from busybox unless you try
it or dig for a package recipe in GitHub...
Hi, Charles.
In fact, an Anaconda/Bioconda 'env' is little more than defined shell
environment variables and a
Hi Steffen and everybody,
I also use Nextflow at work, and indeed, it makes it very easy to run a
pipeline many times. Also, Nextflow is a single Java executable, which
makes it easy to deploy anywhere Java is already installed.
You probably also saw the nf-core repository of modules and
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