Bug#706957: [Ping] Bug#706957: RFS: tryton-modules-stock-lot/2.8.0-1 [ITP]

2013-05-22 Thread Andreas Tille
Hi Mathias, On Wed, May 22, 2013 at 01:01:00PM +0200, Mathias Behrle wrote: In general I'm working in teams were the VCS is hosted on alioth.org and where I have commit permissions. Completely agreed for team maintenance, all Debian Tryton Maintainers stuff is organized like that. My

Bug#706957: [Ping] Bug#706957: RFS: tryton-modules-stock-lot/2.8.0-1 [ITP]

2013-05-21 Thread Andreas Tille
Hi Mathias, thanks for the ping and for working on the tryton modules. On Tue, May 21, 2013 at 05:12:42PM +0200, Mathias Behrle wrote: * Mathias Behrle: Bug#706957: RFS: tryton-modules-stock-lot/2.8.0-1 [ITP] (Mon, 6 May 2013 14:35:04 +0200): CCing specific audience

Trying to use dh_linktree to replace jquery.js but failed

2013-05-10 Thread Andreas Tille
Hi, I tried to get rid of some jquery.js copy by using dh_linktree in git://anonscm.debian.org/debian-science/packages/libgtkdatabox.git but $ cat debian/libgtkdatabox-0.9.2-0-doc.linktrees replace usr/share/javascript/jquery/jquery.js

[Help] Re: Bug#707426: maqview: FTBFS: (.text+0x74): undefined reference to `XISelectEvents'

2013-05-10 Thread Andreas Tille
Hi, I can confirm this problem. On Thu, May 09, 2013 at 10:08:57AM +0200, Lucas Nussbaum wrote: Relevant part: g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-z,relro -L/usr/lib -o maqview read_cache.o view_goto.o view_panel.o gl_gui.o

Re: [Help] Re: Bug#707426: maqview: FTBFS: (.text+0x74): undefined reference to `XISelectEvents'

2013-05-10 Thread Andreas Tille
On Fri, May 10, 2013 at 05:25:04PM +0600, Andrey Rahmatullin wrote: On Fri, May 10, 2013 at 01:01:39PM +0200, Andreas Tille wrote: so I added -lXi explicitly as well as added libxi6 to Build-Depends. You need to add -dev packages, not library packages to B-D. Uhmmm, to early morning - thanks

Bug#696782: RFS: sequitur-g2p/0.0.r1668-1 [ITP] -- Grapheme to Phoneme conversion tool

2013-05-04 Thread Andreas Tille
On Tue, Apr 30, 2013 at 04:09:51AM +0200, Giulio Paci wrote: Il 25/04/2013 08:42, Andreas Tille ha scritto: The advantage of using Debian Science in your specific case would be that there is some gatherer for machine readable information running on this repository to fetch all metadata

Bug#696782: RFS: sequitur-g2p/0.0.r1668-1 [ITP] -- Grapheme to Phoneme conversion tool

2013-05-04 Thread Andreas Tille
Hi Jakub, On Fri, Apr 26, 2013 at 11:50:55PM +0200, Jakub Wilk wrote: * Andreas Tille andr...@an3as.eu, 2013-04-25, 08:42: It is fine if Jakub is working as sponsor - I know that he is doing a great job in sponsering. However, he can perfectly do this in Debian Science repository as well

Bug#696782: RFS: sequitur-g2p/0.0.r1668-1 [ITP] -- Grapheme to Phoneme conversion tool

2013-04-25 Thread Andreas Tille
Hi Giulio, On Thu, Apr 25, 2013 at 02:22:39AM +0200, Giulio Paci wrote: git://anonscm.debian.org/collab-maint/sequitur-g2p.git I'd rather recommend to join Debian Science team because it is definitely related and you can get additional support. Jakub Wilk seems interested in this

Bug#706049: RFS: nsnake/1.5-1 [ITP] -- classic snake game with textual interface

2013-04-25 Thread Andreas Tille
On Wed, Apr 24, 2013 at 08:13:05PM +0200, Anton Gladky wrote: Ok, Alexandre, I have sponsored your package. Please, consider also an adopting of snake4 package to get some more packaging experience and to help Debian. You might also like to consider adding these games to the appropriate task

Bug#706049: RFS: nsnake/1.5-1 [ITP] -- classic snake game with textual interface

2013-04-25 Thread Andreas Tille
Hi again, On Wed, Apr 24, 2013 at 08:56:47PM +0200, Anton Gladky wrote: [1] http://anonscm.debian.org/gitweb/?p=collab-maint/snake4.git I would prefer if games would be maintained in pkg-games[1] rather than collab-maint. The advantage from a Blends perspective is that there is a gatherer

Bug#705232: RFS: logic-analyzer-rpi/0.1.1-1 [ITP]

2013-04-16 Thread Andreas Tille
Hi Yves, your RFS request might be more successful if you would maintain the package inside the Debian Science team and would use the according repository for packaging. Kind regards Andreas. On Thu, Apr 11, 2013 at 06:14:35PM +0200, yves renier wrote: Package: sponsorship-requests

Bug#696782: RFS: sequitur-g2p/0.0.r1668-1 [ITP] -- Grapheme to Phoneme conversion tool

2013-04-16 Thread Andreas Tille
Hi Giulio, I missed your initial ITP but now I became aware of the package. I also noticed that you are doing the packaging in git://anonscm.debian.org/collab-maint/sequitur-g2p.git I'd rather recommend to join Debian Science team because it is definitely related and you can get additional

Re: Why is it so hard to get sponsors.....?

2013-02-28 Thread Andreas Tille
Hi Paul, thanks for your great analysis. I might like to stress explicitly one item (even if I totally agree with all others in general) On Wed, Feb 27, 2013 at 01:37:10PM +0800, Paul Wise wrote: Specialization: Debian contributors generally work on stuff they use or are otherwise are

Re: Watch file help needed

2013-02-14 Thread Andreas Tille
On Wed, Feb 13, 2013 at 09:58:28PM +0600, Andrey Rahmatullin wrote: For the reference: opts=uversionmangle=s/_/./ \ ftp://ftp.ebi.edu.au/pub/software/MEME/index.html .*/meme_([\d\._]+)\.tar\.gz -- Downloading updated package meme_4.9.0_4.tar.gz uscan warning: In directory .,

Watch file help needed

2013-02-13 Thread Andreas Tille
Hi, the watch file of the prospective package meme[1] is reporting a new version but fails to download the latest version (4.9.0.4). It was working nicely with version 4.9.0.3. I just get: $ uscan --verbose --force-download ... 3.5.1/meme_3.5.1.tar.gz 3.5.0/meme_3.5.0.tar.gz Newest

Re: Help (Was: Bug#699260: r-cran-genabel: FTBFS: error: subscript out of bounds)

2013-01-30 Thread Andreas Tille
Hi Charles, On Wed, Jan 30, 2013 at 01:47:25PM +0900, Charles Plessy wrote: Our choices are: a) distribute 1.7-3 in Wheezy (note that the diff is not small), b) backport the correction, and c) remove r-cran-genabel from Wheezy. I volunteer for a), and I am neutral with b) and c). Due

Help (Was: Bug#699260: r-cran-genabel: FTBFS: error: subscript out of bounds)

2013-01-29 Thread Andreas Tille
Hi, because I'm lacking the relevant R knowledge (and I also fail in finding some relevant R/CRAN packaging team inside Debian) I'm writing to Debian Mentors and main R packages maintainer. I guess with some basic R knowledge the problem below is easy to solve. I checked the source of

Bug#694632: Bug#684039: Bug#694632: Bug#684039: ITP: prime-phylo -- Bayesian estimation of gene trees taking the species tree into account

2012-12-18 Thread Andreas Tille
Hi Erik, On Tue, Dec 18, 2012 at 10:06:15AM +0100, Erik Sjölund wrote: I think the documentation http://debian-med.alioth.debian.org/docs/policy.html was not so clear about how to handle a new upstream release. Anyway when I also found

Bug#694632: Bug#684039: ITP: prime-phylo -- Bayesian estimation of gene trees taking the species tree into account

2012-12-18 Thread Andreas Tille
Hi Erik On Tue, Dec 18, 2012 at 04:18:26PM +0100, Erik Sjölund wrote: On Tue, Dec 18, 2012 at 2:30 PM, Andreas Tille andr...@an3as.eu wrote: Sometimes it is hard to describe things which are clear to the people who are comfortable with the procedure to describe it for newcomers - so any

Bug#694632: Bug#684039: ITP: prime-phylo -- Bayesian estimation of gene trees taking the species tree into account

2012-12-17 Thread Andreas Tille
Hi Erik, thanks for your work on prime-phylo. On Mon, Dec 17, 2012 at 11:06:28AM +0100, Erik Sjölund wrote: I have now created: http://anonscm.debian.org/gitweb/?p=debian-med/prime-phylo.git Looks good so far with one exception I've found: Please check the copyright by using $ cme fix

Bug#694632: Bug#684039: ITP: prime-phylo -- Bayesian estimation of gene trees taking the species tree into account

2012-12-17 Thread Andreas Tille
Hi Erik, On Mon, Dec 17, 2012 at 02:37:30PM +0100, Erik Sjölund wrote: I followed your suggestion and changed the license short name to MTL. OK. Regarding the file src/cxx/libraries/prime/beep2blas.hh when I started packaging Prime I tried to investigate where the file content came

Bug#694632: Bug#684039: Bug#694632: Bug#684039: ITP: prime-phylo -- Bayesian estimation of gene trees taking the species tree into account

2012-12-17 Thread Andreas Tille
On Mon, Dec 17, 2012 at 05:24:00PM +0100, Erik Sjölund wrote: I made a new upstream release http://prime.sbc.su.se/download/prime-phylo-1.0.11.tar.gz where I added the extra copyright statement // Copyright: Modifications to the original file by Bengt Sennblad bengt.sennb...@ki.se

Bug#694632: Bug#684039: ITP: prime-phylo -- Bayesian estimation of gene trees taking the species tree into account

2012-12-11 Thread Andreas Tille
Hi Erik, On Tue, Dec 11, 2012 at 03:37:28PM +0100, Erik Sjölund wrote: Hi Andreas, I've now created the account eriksjolund-guest at alioth.debian.org Fine I've just added you to the Debian Med team. I would prefer to use git for the repository. OK. If I understand you correctly, the next

Bug#694632: ITP: prime-phylo -- Bayesian estimation of gene trees taking the species tree into account

2012-12-06 Thread Andreas Tille
) and will check whether it is ready for upload. Kind regards and thanks so far for your work Andreas. On Thu, Nov 29, 2012 at 09:31:45AM +0100, Andreas Tille wrote: Hi Erik, it seems I missed your ITP - otherwise I would have most probably pinged you whether you intent to do the packaging

Bug#694632: ITP: prime-phylo -- Bayesian estimation of gene trees taking the species tree into account

2012-11-29 Thread Andreas Tille
Hi Erik, it seems I missed your ITP - otherwise I would have most probably pinged you whether you intent to do the packaging inside the Debian Med team. We try to inject medical and microbiological software into Debian and your ITP seems to fit perfectly into our biology task[1]. So I would

How to specify a = X Y Depends (Was: Packaging GNU Health)

2012-11-25 Thread Andreas Tille
Hi Emilien, On Sat, Nov 24, 2012 at 11:54:59AM +0100, Emilien Klein wrote: ... As a general question: If package A depends on a specific set of releases (like in this case Tryton 2.4.X), how do we usually handle the case where the libraries are updated before the package depending on the

Re: jquery.js from Doxygen in documentation, what to do about it

2012-11-24 Thread Andreas Tille
On Fri, Nov 23, 2012 at 12:01:05PM -0800, Russ Allbery wrote: For right now, I think the best thing for the Doxygen *clients* to do is just ignore this issue. It may need a bug against doxygen, though (and possibly some help for the Doxygen maintainer). I'm just wild-guessing that the new

Any idea how to write watch file for codeplex hosted sources?

2012-11-05 Thread Andreas Tille
Hi, I have spent some time into writing a watch file for https://csb.codeplex.com/releases/ but failed and some research on mailing lists revealed some other failures. Any idea whether a clever mangling might help anyway? And yes, I will ask my sponsee to teach upstream to find more easy

Re: Any idea how to write watch file for codeplex hosted sources?

2012-11-05 Thread Andreas Tille
Hi, On Mon, Nov 05, 2012 at 08:29:24PM +0600, Andrey Rahmatullin wrote: On Mon, Nov 05, 2012 at 03:23:02PM +0100, Andreas Tille wrote: I have spent some time into writing a watch file for https://csb.codeplex.com/releases/ but failed and some research on mailing lists revealed

Help needed to download source via sf.net redirector

2012-10-16 Thread Andreas Tille
Hi, I try to write a watch file for pcalendar which is available at http://sourceforge.net/projects/linuxorg/files/PeriodicCalendar/pcalendar-3.3/ Unfortunately neither http://sf.net/pcalendar/pcalendar-src-(\d[\d\.]+)\.(?:tgz|tbz|txz|(?:tar\.(?:gz|bz2|xz))) nor

Bug#673087: RFS: the-powder-toy/78.1-1 [ITP] -- Physics sandbox game

2012-10-12 Thread Andreas Tille
Hi Aditya, not that I would specifically interested in this very package (just stumbled upon it because of the physics keyword) I think you could enhance your chances to find a sponsor if you would more closely join the pkg-games team (by for instance following the group packaging policy and

Bug#689041: RFS: orthanc/0.2.1-3 [ITP] -- Lightweight, RESTful DICOM server for healthcare and medical research

2012-10-06 Thread Andreas Tille
Hi Sébastien, On Sun, Sep 30, 2012 at 06:29:33PM +0200, Mathieu Malaterre wrote: Salut Sébastien, Have you thought of maintaining your package within the debian-med umbrella org ? http://www.debian.org/devel/debian-med/ Just back from vacation I read your conversation about orthanc

Need help for watch file

2012-09-14 Thread Andreas Tille
Hi, to enable properly downloading the volview sources I tried the following watch file: version=3 opts=\ dversionmangle=s/[~\+]dfsg//,\ downloadurlmangle=s/VolView-([\d\.]+)-Linux-x86_64.sh/VolViewSrc.tar.gz/,\ filenamemangle=s/VolView(-[\d\.]+)-Linux-x86_64.sh/VolViewSrc$1.tar.gz/ \

Another watch file problem

2012-09-14 Thread Andreas Tille
Hi, I stumbled upon another watch file problem for package visad which is available via ftp. I considered the following watch file a good idea opts=downloadurlmangle=s?$?/visad_src.jar?,filenamemangle=s?$?/visad_src.jar? \ ftp://ftp.ssec.wisc.edu/pub/visad-([\d\.]+) but got the following

Bug#681230: [ftpmas...@ftp-master.debian.org: libgtkdatabox_0.9.1.3-1_amd64.changes ACCEPTED into experimental, experimental]

2012-09-02 Thread Andreas Tille
-master.debian.org - Date: Fri, 31 Aug 2012 19:00:16 + From: Debian FTP Masters ftpmas...@ftp-master.debian.org To: Debian Science Maintainers debian-science-maintain...@lists.alioth.debian.org, Andreas Tille ti...@debian.org Subject: libgtkdatabox_0.9.1.3-1_amd64.changes ACCEPTED

Re: Need help for watch file

2012-08-28 Thread Andreas Tille
Hi, On Tue, Aug 28, 2012 at 12:12:08AM +0800, Paul Wise wrote: Best ask them to fix that and point them at our upstream guide while you are at it: http://wiki.debian.org/UpstreamGuide Right, but I guess chances are low ... However, there should be some chance to drain the current

Need help for watch file

2012-08-27 Thread Andreas Tille
Hi, the watch file for the mriconvert package[1] is obviosely not working because http://lcni.uoregon.edu/~jolinda/MRIConvert/ upstream does not mind numbering its mriconvert_sources.zip sources. However, there should be some chance to drain the current version from other files on this page.

Help with gcc-4.7 needed (Was: poco: FTBFS with multiarch libmysqlclient-dev)

2012-07-26 Thread Andreas Tille
the attention it would need. Please help fixing the problem to make sure the reverse depends can stay in testing. Kind regards Andreas. - Forwarded message from Andreas Tille andr...@an3as.eu - Date: Thu, 26 Jul 2012 14:23:26 +0200 From: Andreas Tille andr...@an3as.eu To: Mathieu Malaterre

Re: Help with gcc-4.7 needed (Was: poco: FTBFS with multiarch libmysqlclient-dev)

2012-07-26 Thread Andreas Tille
On Thu, Jul 26, 2012 at 04:55:02PM +0200, Michael Wild wrote: Hi Andreas Reading the error message, it seems that there is a forward-declaration of replaceInPlace(...) is missing before it is used in String.h:448. It seems like simply reversing the order of declaration should fix the

Help needed in gcc-4.7 - cython issue

2012-07-24 Thread Andreas Tille
Hi, I did run into some trouble with a fresh package which is prepared in SVN at Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/python-biom-format/trunk/ You can obtain the source via `uscan --force-download` or `make -f debian/rules get-orig-source` . The package builds nicely

[k...@roeckx.be: Bug#680436: sra-sdk: FTBFS: gcc/i386/atomic32.h:125:5: error: impossible constraint in 'asm']

2012-07-24 Thread Andreas Tille
Hi, I tagged this bug help because I admit I do not have any clue about assembler programming and atomic operations. I did also forewarded the problem upstream. Any hint would be welcome Andreas. - Forwarded message from Kurt Roeckx k...@roeckx.be - Date: Thu, 5 Jul 2012

Re: Bug#681230: RFS: gtkdataboxmm/0.9.1-1 [ITP]

2012-07-16 Thread Andreas Tille
Hi Daniele, On Mon, Jul 16, 2012 at 10:50:29AM +0200, Daniele E. Domenichelli wrote: On 14/07/12 22:39, Andreas Tille wrote: Just tell me if you are accepted to Debian Science team (I'm not admin) and you have commited the packaging. Meanwhile I have uploaded libgtkdatabox and I might

Re: Bug#681230: RFS: gtkdataboxmm/0.9.1-1 [ITP]

2012-07-14 Thread Andreas Tille
Hi, On Fri, Jul 13, 2012 at 11:39:02AM +0200, Daniele E. Domenichelli wrote: On 12/07/12 16:52, Andreas Tille wrote: I would volunteer to check and sponsor your package and I would be really happy if you could also have some look into libgtkdatabox to enhance maintenance. Thanks!! I'm

Re: Bug#681230: RFS: gtkdataboxmm/0.9.1-1 [ITP]

2012-07-12 Thread Andreas Tille
Hi Daniele, most certainly you know that libgtkdatabox (without mm) is maintained in the Debian Science team. I admit it is not maintained at the standards I would like to apply usually and I'm one of the a bit lazy uploaders (the other one seems to have vanished at all). I used your ITP as a

uscan ends up with 500 Can't connect host:443 (certificate verify failed)

2012-07-09 Thread Andreas Tille
Hi, at svn://svn.debian.org/svn/debian-med/trunk/packages/camitk/trunk I did some preparation for a package including a watch file. Unfortunately I get: $ uscan --verbose --force-download -- Scanning for watchfiles in . -- Found watchfile in ./debian -- In debian/watch, processing watchfile

Re: Ruby help needed (Was: Bug#676114: wordnet: FTBFS: debian/wn-for-goldendict.rb:465: invalid multibyte char (US-ASCII))

2012-06-06 Thread Andreas Tille
Hi, On Wed, Jun 06, 2012 at 10:08:24AM +0400, Dmitry E. Oboukhov wrote: I see you have already patched the script. At first thanks to thsoe people who quickly provided patches. Hoewever, I decided to follow the hint to Build-Depend on ruby 1.8 because in this case we not only know that the

Re: [Help] New version of ImageJ does not build in pbuilder because of lacking DISPLAY variable

2012-06-06 Thread Andreas Tille
Hi Vincent, On Mon, Jun 04, 2012 at 12:37:45PM +0200, Vincent Fourmond wrote: I can confirm that debuild works fine because there is a properly setup X environment. Any clue?  The hint from Steve[2] did not ring a bell when I was looking at the lines of code where the problem occured.

Ruby help needed (Was: Bug#676114: wordnet: FTBFS: debian/wn-for-goldendict.rb:465: invalid multibyte char (US-ASCII))

2012-06-05 Thread Andreas Tille
Hi, Dmitry E. Oboukhov un...@debian.org has added some Ruby code to wordnet packaging (debian/wn-for-goldendict.rb) which worked for two years and at least up to Fri, 01 Jun 2012 13:45:40 +0200 when I did the last upload. Yesterday I wanted to try to fix two (unrelated) open bugs and realised

Re: Ruby help needed (Was: Bug#676114: wordnet: FTBFS: debian/wn-for-goldendict.rb:465: invalid multibyte char (US-ASCII))

2012-06-05 Thread Andreas Tille
Hi Sam, On Tue, Jun 05, 2012 at 11:26:42AM -0400, Sam Ruby wrote: On 06/05/2012 10:08 AM, Andreas Tille wrote: debian/wn-for-goldendict.rb:465: invalid multibyte char (US-ASCII) debian/wn-for-goldendict.rb:465: invalid multibyte char (US-ASCII) debian/wn-for-goldendict.rb:465: syntax error

Re: Bug#676114: Ruby help needed (Was: Bug#676114: wordnet: FTBFS: debian/wn-for-goldendict.rb:465: invalid multibyte char (US-ASCII))

2012-06-05 Thread Andreas Tille
Hi Steve, On Tue, Jun 05, 2012 at 06:10:55PM +0100, Steve McIntyre wrote: Any better hint? It sounds like you should replace the functionality of the script in a more suitable language, specifically: * one you (and other maintainers) understand * one that's stable and supported on all

Re: Bug#676114: Ruby help needed (Was: Bug#676114: wordnet: FTBFS: debian/wn-for-goldendict.rb:465: invalid multibyte char (US-ASCII))

2012-06-05 Thread Andreas Tille
On Tue, Jun 05, 2012 at 06:35:28PM +0100, Steve McIntyre wrote: Sounds like you made a mistake, I'm afraid. :-( My barrier to revert this mistake is low. If there is no simple solution in three days (OK, I'll be offline weekend+Monday - so there is some additional delay) - I'll kick the binary

[Help] New version of ImageJ does not build in pbuilder because of lacking DISPLAY variable

2012-06-04 Thread Andreas Tille
Hi, I just commited packaging stuff for the latest ImageJ version to SVN[1] but I failed in building when using pdebuild: build: [copy] Copying 1 file to /tmp/buildd/imagej-1.46o/build [copy] Copying 1 file to /tmp/buildd/imagej-1.46o/build [copy] Copying 1 file to

Re: Help needed to fix gcc 4.7 bug in jellyfish package

2012-05-03 Thread Andreas Tille
Hi, On Wed, May 02, 2012 at 07:32:50AM +, Sune Vuorela wrote: On 2012-05-02, Andreas Tille andr...@an3as.eu wrote: Hi, I tried to fix the problem in the jellyfish package but the general hints given did not helped me really. Any more precise help to fix this problem

Re: Help needed to fix gcc 4.7 bug in jellyfish package

2012-05-03 Thread Andreas Tille
, 2012 at 09:52:09AM +0200, Michael Wild wrote: On 05/02/2012 08:33 AM, Andreas Tille wrote: Hi, I tried to fix the problem in the jellyfish package but the general hints given did not helped me really. Any more precise help to fix this problem: parse_dna.cc:97:3: error: narrowing

Help needed to fix gcc 4.7 bug in jellyfish package

2012-05-02 Thread Andreas Tille
Hi, I tried to fix the problem in the jellyfish package but the general hints given did not helped me really. Any more precise help to fix this problem: parse_dna.cc:97:3: error: narrowing conversion of '-3' from 'int' to 'const uint_t {aka const long unsigned int}' inside { } is ill-formed in

Help needed to fix g++ 4.7 error [Was: Bug#667120: bowtie: ftbfs with GCC-4.7]

2012-04-22 Thread Andreas Tille
Hi, similarly to the plink case I can not found an easy solution for this problem. Kind regards Andreas. - Forwarded message from Matthias Klose d...@debian.org - Date: Tue, 03 Apr 2012 23:08:03 + From: Matthias Klose d...@debian.org To: mainto...@bugs.debian.org Subject:

Help needed [Was: Bug#667325: plink: ftbfs with GCC-4.7]

2012-04-22 Thread Andreas Tille
Hi, I tried to follow the hints to fix this problem but failed. Any more skilled C++ programmer than me who might have a clue? Kind regards Andreas. - Forwarded message from Matthias Klose d...@debian.org - Date: Tue, 03 Apr 2012 23:11:40 + From: Matthias Klose

Help writing a watch file for rnahybrid

2012-04-19 Thread Andreas Tille
Hi, I tried to write a watch file for rnahybrid package: version=3 http://bibiserv.techfak.uni-bielefeld.de/download/tools/rnahybrid.html RNAhybrid-(.*)-src\.tar\.gz The first question is: Why does it not find a new version at all: $ uscan --verbose -- Scanning for watchfiles in . -- Found

Re: Help writing a watch file for rnahybrid

2012-04-19 Thread Andreas Tille
Hi Paul, On Thu, Apr 19, 2012 at 02:54:42PM +0800, Paul Wise wrote: On Thu, Apr 19, 2012 at 2:40 PM, Andreas Tille wrote: The first question is: Why does it not find a new version at all: uscan relies solely on links and since there are no links to the tarballs, it cannot find any

Parsing single debian/control file using python-debian

2012-04-19 Thread Andreas Tille
Hi, I'm unsure whether this might be the proper mailing list to ask questions like this - but I have no better idea. I intend to parse some machine readable files in some team maintained packages. When trying something like ctrl = open('debian/control','r') for ctrlstanza in

Re: Any hint for help2man if programm does not accept help option

2012-04-02 Thread Andreas Tille
Hi, On Mon, Apr 02, 2012 at 07:45:46AM +0200, Gergely Nagy wrote: help2man -h $program will probably do the trick. No: $ help2man -h help2man help2man: can't get `' info from help2man That happens because help2man without arguments will output to stderr. Add --no-discard-stderr,

Any hint for help2man if programm does not accept help option

2012-04-01 Thread Andreas Tille
Hi, I would like to add man pages to a program which does not accept any help option but if you call it without any option it outputs the help information which would be needed to create the man page. Is there any trick to convince help2man to work on this anyway? Kind regards Andreas.

Re: Proable multiarch related problem in finding header file (Was: Problem finding posix_types_32.h when using pbuilder on the fis-gtm package)

2012-02-14 Thread Andreas Tille
On Tue, Feb 14, 2012 at 09:47:23AM +0100, Mathieu Malaterre wrote: Andreas, Doing a quick check on packages.d.o I can see the file your are talking about. However: http://packages.debian.org/search?suite=sidarch=anymode=pathsearchon=contentskeywords=posix_types.h returns an empty

Proable multiarch related problem in finding header file (Was: Problem finding posix_types_32.h when using pbuilder on the fis-gtm package)

2012-02-13 Thread Andreas Tille
Hi, just a comment on this: I suspect a multiarch issue and http://lists.debian.org/debian-devel-announce/2011/06/msg2.html Multiarch handling of header files (/usr/include) will require more per-package attention, ... so Luis is asking for some hints how to deal with this like the

Re: Bug#653799: FTBFS: CMake Error at cmake_modules/FindOpenCV.cmake:77 (file): file STRINGS file /usr/include/opencv/cvver.h cannot be read.

2012-02-02 Thread Andreas Tille
Hi, On Thu, Feb 02, 2012 at 08:00:20AM +0100, Andreas Tille wrote: This version is not yet available on the mirror I'm using. Once it is there I will test the following changes: I can confirm that I was able to build after adding to opencv libs explicitely to the linker flags which now looks

Re: Bug#639995: epigrass does not start on GNOME

2012-02-02 Thread Andreas Tille
Hi Davide, thanks for using EpiGrass and I hope to get it up and running for your study. On Thu, Feb 02, 2012 at 12:21:27PM +0100, erB@rilloo wrote: Hello Jakub, I still have the error reported into bug 639995 (epigrass: missing dependency on python-pkg-resources): Traceback (most recent

Re: Bug#653799: FTBFS: CMake Error at cmake_modules/FindOpenCV.cmake:77 (file): file STRINGS file /usr/include/opencv/cvver.h cannot be read.

2012-02-01 Thread Andreas Tille
Hi Nobuhiro, On Thu, Feb 02, 2012 at 04:06:12AM +0900, Nobuhiro Iwamatsu wrote: tags 653799 patch thanks ... I checked this bug. Because /usr is set to OpenCV_DIR, /usr/share/OpenCV/OpenCVConfig.cmake file has not been read. Moreover, when there is no /usr/OpenCVConfig.cmake, another

Re: Bug#653799: FTBFS: CMake Error at cmake_modules/FindOpenCV.cmake:77 (file): file STRINGS file /usr/include/opencv/cvver.h cannot be read.

2012-02-01 Thread Andreas Tille
patch kindly provided by Nobuhiro Iwamatsu +iwama...@debian.org (thanks) +Closes: #653799 + * debian/control: Build-Depends: libcv-dev (= 2.3.1-7) + + -- Andreas Tille ti...@debian.org Mon, 09 Jan 2012 10:10:13 +0100 + sitplus (1.0.1-2) unstable; urgency=low * debian/patches

Re: Help with architecture not supporting SSE (Was: Bug#656755: libhmsbeagle FTBFS on everything except amd64)

2012-01-25 Thread Andreas Tille
Hi Peter, many thanks for the patch which was in fact helpful to solve the problem. On Wed, Jan 25, 2012 at 11:04:13AM +, peter green wrote: Ok I took pity on you and took a look at the Makefile.am in that directory, turns out it wasn't that hard to disable building of the CPU with SSE

Re: Help with architecture not supporting SSE (Was: Bug#656755: libhmsbeagle FTBFS on everything except amd64)

2012-01-24 Thread Andreas Tille
On Wed, Jan 25, 2012 at 01:37:59AM +, peter green wrote: Andreas Tille wrote: Hi, I have to admit that I do not have any experience with SSE issues. Any advise what to do in cases like this (see build logs linked below)? From looking at the build logs it looks like it is trying

Help with architecture not supporting SSE (Was: Bug#656755: libhmsbeagle FTBFS on everything except amd64)

2012-01-22 Thread Andreas Tille
is welcome Andreas. On Sat, Jan 21, 2012 at 09:50:16PM +, Adam D. Barratt wrote: On Sat, 2012-01-21 at 17:16 +0100, Andreas Tille wrote: On Sat, Jan 21, 2012 at 03:00:25PM +, peter green wrote: It seems things are a little more complex than they first appeared

Re: Help with java package (beast-mcmc) needed

2012-01-10 Thread Andreas Tille
Hi Sylvestre, On Tue, Jan 10, 2012 at 06:09:53AM +0100, Sylvestre Ledru wrote: Exception in thread main java.lang.NoClassDefFoundError: jam/console/ConsoleApplication Usually, this kind of problem is due to the CLASSPATH not containing jam.jar $ grep jam debian/rules export CLASSPATH :=

Re: Help with java package (beast-mcmc) needed

2012-01-10 Thread Andreas Tille
On Tue, Jan 10, 2012 at 12:01:57PM +0100, Olivier Sallou wrote: Usually, this kind of problem is due to the CLASSPATH not containing jam.jar $ grep jam debian/rules export CLASSPATH :=

Re: Bug#653799: FTBFS: CMake Error at cmake_modules/FindOpenCV.cmake:77 (file): file STRINGS file /usr/include/opencv/cvver.h cannot be read.

2012-01-09 Thread Andreas Tille
Hi, On Fri, Dec 30, 2011 at 07:08:09PM -0600, Steve M. Robbins wrote: Source: sitplus Version: 1.0.1-2 Severity: serious Justification: fails to build from source Package failed to build in a clean sid chroot: -- checking for one of the modules 'glib-2.0' -- Found GLib2: glib-2.0

Help with java package (beast-mcmc) needed

2012-01-08 Thread Andreas Tille
Hi, I tried building a package from beast and uploaded for simlicity this stuff to http://people.debian.org/~tille/packages/beast-mcmc-help-wanted/ It contains six executable files in /usr/bin. Three of them are starting nicely. These are beast-mcmc, beauti and loganalyser. However, the

Re: Sofa-framework: Again QT help needed / Re: [Sofa-devel] Debian packaging

2012-01-03 Thread Andreas Tille
Hi Eric, to give an update of this issue I uploaded the latest status of packaging to http://people.debian.org/~tille/packages/sofa-framework/ It shows problems building the plugins as you have noticed. As I said in my latest (private) mail I really needed to add LIBS *= -lQt3Support

Re: Sofa-framework: Again QT help needed

2012-01-01 Thread Andreas Tille
On Sat, Dec 31, 2011 at 12:41:11PM +0200, Boris Pek wrote: Hi Andreas, There is typo here. Try correct string: QT += qt3support While I have no experience with cmake I'm not sure about the difference between += and *= I guess the vraiant with '*' was intended. In any case I can confirm that

Re: Sofa-framework: Again QT help needed

2011-12-29 Thread Andreas Tille
Hi Eric, On Thu, Dec 29, 2011 at 07:33:33AM +0100, Eric MAEKER wrote: There is obviosely some trouble in the Qt3 compatibility layer. Hi Andreas, I've took a **very quick** look at the code. I believe that sofa-1.0-rc1/applications/projects/Modeler/exec/exec.pro is missing the

Sofa-framework: Again QT help needed

2011-12-28 Thread Andreas Tille
Hi, I'm afraid I need some Qt help again. I tried to build latest version of sofa-framework using Debian packaged libraries if possible but failed. I have uploaded my try to http://people.debian.org/~tille/packages/sofa-framework/ There is obviosely some trouble in the Qt3 compatibility

Any simple method to detect source format inside debian/rules

2011-12-17 Thread Andreas Tille
Hi, is there any better method to know whether source format 3.0 (quilt) is used than manually parse whether debian/source/format exists and contains this string? I'd like to do an include statement depending from format 3.0 (quilt) is used or not. Kind regards Andreas. --

Problem compiling sofa-framework

2011-12-13 Thread Andreas Tille
Hi, when finally trying to close #638170 of sofaframework I was running into another problem with building this package. The compilation breaks with: g++ -c -m64 -pipe -W -I/usr/include/libxml2 -O2 -O1 -D_REENTRANT -fPIC -DQT_WEBKIT -DSOFA_QT4 -DSOFA_GUI_QTVIEWER -DSOFA_GUI_GLUT

Re: Problem compiling sofa-framework

2011-12-13 Thread Andreas Tille
Hi Eric, On Tue, Dec 13, 2011 at 10:28:03AM +0100, Eric MAEKER wrote: Le 13 déc. 2011 à 09:51, Andreas Tille a écrit : /usr/include/qwt Does Qwt project installed on the machine ? Sure. This is guaranted by the Build-Depends (and if not the build would stop way earlier). Kind regards

Re: C++ help wanted: FTBFS mira

2011-12-08 Thread Andreas Tille
Hi, On Thu, Dec 08, 2011 at 09:53:03AM +0100, Mike Hommey wrote: 219:bposhashstat_t () { 220:} And line 163 is: 163: bposhashstat_t() {}; In other words, you have two definitions of the same (empty) constructor in the same class. Ahh, deleting the second one works

Re: Help needed with Conflicts/Replaces/Provides after renaming packages and reordering files

2011-12-01 Thread Andreas Tille
On Wed, Nov 30, 2011 at 04:57:13PM +0100, Ansgar Burchardt wrote: arch:all package for data, I would move as much architecture-independent files as possible there. Or can the drug database also be used by different programs? Exactly the later was the motivation. The drug database will be

Help needed with Conflicts/Replaces/Provides after renaming packages and reordering files

2011-11-30 Thread Andreas Tille
to override files which were previosely in freediams-data and also freediams-drugs will override files from the previous freediams-data. Here is a snippet of the SVN log which was supposed to solve this: - Forwarded message from Andreas Tille ti...@alioth.debian.org - Author: tille Date: 2011

Re: Help needed with Conflicts/Replaces/Provides after renaming packages and reordering files

2011-11-30 Thread Andreas Tille
On Wed, Nov 30, 2011 at 03:06:29PM +0100, Jakub Wilk wrote: Lintian would emit conflicts-with-version here. No, it does not. And I think that moving freediams ( ${source:Version}) from Conflicts to Breaks could help. It defintely helps! Many thanks, this saved my afternoon Andreas.

Help with libboost needed

2011-11-28 Thread Andreas Tille
Hi, could some kind soul please have a look into #642697? As far as I can see the package in question (autodock-vina) is relaying on features of older libboost and I wonder how it can be ported to recent version. Any help? Kind regards Andreas. -- http://fam-tille.de -- To

Re: Help with libboost needed

2011-11-28 Thread Andreas Tille
Hi Sebastian, On Mon, Nov 28, 2011 at 10:25:53AM +0100, Sebastian Ramacher wrote: There is a list of deprecated methods and their replacement at [1]. If that doesn't help you can try to compile with -DBOOST_FILESYSTEM_VERSION=2 for now [2, note at the top]. thanks for the helpful hint.

Re: Help with libboost needed

2011-11-28 Thread Andreas Tille
Hi Sebastian, On Mon, Nov 28, 2011 at 12:04:40PM +0100, Sebastian Ramacher wrote: According to [1] the constructor path(string, name_check) is not supported anymore. It's just path(string) now. Attached is a patch to fix this and all the remaining issues (you now also need to link against

Bug#639995: epigrass does not start on GNOME

2011-09-02 Thread Andreas Tille
Hi, I received a bug report against epigrass which I can not reprodice. The bug reported now provided more information which looks like a missing dependency. However, I might lack some experience with Python modules. Any hint how to fix this: - Forwarded message from melchiaros

Re: RFS: Sitplus -- Free software framework for ludic-therapeutic activities

2011-08-17 Thread Andreas Tille
Hi Luis, I have set replay-to to dbeina-med list because IMHO the discussion is continued better there ... On Wed, Aug 17, 2011 at 11:21:26AM +0200, Luis Rivas wrote: Well, I think Sitplus is more a therapeutic tool than an computer aid for people with disability needs. So, I vote for a

Re: RFS: Sitplus -- Free software framework for ludic-therapeutic activities

2011-08-17 Thread Andreas Tille
Hi Kilian, before spending your time you might consider my posting http://lists.debian.org/debian-med/2011/08/msg00119.html Any further comments are welcome for sure. Kind regards Andreas. On Wed, Aug 17, 2011 at 11:24:47AM +0200, Luis Rivas wrote: 2011/8/13 Kilian Krause

Re: RFS: Sitplus -- Free software framework for ludic-therapeutic activities

2011-08-10 Thread Andreas Tille
On Tue, Aug 09, 2011 at 07:11:21PM +0200, Luis Rivas wrote: 2011/8/9 Andreas Tille andr...@an3as.eu: Hi Luis, did you considered maintaining this package in the Debian Med team? There seems to be some consensus that this package would fit into our set of packages.  I'd volunteer

Re: RFS: Sitplus -- Free software framework for ludic-therapeutic activities

2011-08-09 Thread Andreas Tille
Hi Luis, did you considered maintaining this package in the Debian Med team? There seems to be some consensus that this package would fit into our set of packages. I'd volunteer to sponsor the package (but it's perfectly fine if this is done by Kilian for sure). Kind regards Andreas. On

Re: Bug#625120: clonalframe: FTBFS: src/move_hidden.cpp:169:62: error: taking address of temporary [-fpermissive]

2011-06-29 Thread Andreas Tille
Hi, sorry for the late reply to this bug. I can reproduce the problem on my side but I'm not finally sure that this is really a problem of clonalframe or whether it is a bad coincidence with libgsl0-dev. The line in question where the problem occures is: src/move_hidden.cpp:423:59: error:

OpenMPI-bin missing on some arches (Was: mrbayes-mpi: uninstallable on mipsen and s390)

2011-06-29 Thread Andreas Tille
Hi, Your package is uninstallable on some archs: mrbayes-mpi/mips unsatisfiable Depends: openmpi-bin mrbayes-mpi/mipsel unsatisfiable Depends: openmpi-bin mrbayes-mpi/s390 unsatisfiable Depends: openmpi-bin I admit I'm not so comfortable with these architectures. Is there any

Re: Bug#629815: No rule to make target `/usr/lib/libdl.so'

2011-06-23 Thread Andreas Tille
Hi again, to give an update to this problem: On Fri, Jun 10, 2011 at 11:37:00AM +0200, Mathieu Malaterre wrote: On Thu, Jun 9, 2011 at 11:27 PM, Andreas Tille andr...@an3as.eu wrote: On Thu, Jun 09, 2011 at 01:02:56PM +0200, Sven Joachim wrote: The problem is that libdl.so has been moved

No rule to make target `/usr/lib/libdl.so' (Was: Failed to build Ginko CADx)

2011-06-09 Thread Andreas Tille
On Wed, Jun 08, 2011 at 11:28:52PM +0200, Andreas Tille wrote: On Wed, Jun 08, 2011 at 11:26:22AM +0200, Andreas Tille wrote: make[3]: *** No rule to make target `/usr/lib/libdl.so', needed by `src/cadxcore/libCADxCore.so.2.4.1.1'. Stop. I suspect removing the --parallel

Re: No rule to make target `/usr/lib/libdl.so'

2011-06-09 Thread Andreas Tille
On Thu, Jun 09, 2011 at 10:00:40AM +0200, Sven Joachim wrote: However, the problem I was facing in the not yet released package ginkocadx[1] seems to be quite common currently. It is in #629815 and some similar case happens in #618094 and thus I'm suspecting a general problem somehow. So

Multiarch with cmake seems to cause FTBFS (Was: Bug#629815: No rule to make target `/usr/lib/libdl.so')

2011-06-09 Thread Andreas Tille
, Jun 09, 2011 at 01:02:56PM +0200, Sven Joachim wrote: On 2011-06-09 11:19 +0200, Andreas Tille wrote: On Thu, Jun 09, 2011 at 10:00:40AM +0200, Sven Joachim wrote: The problem is that libdl.so has been moved to the multiarch paths in libc6-dev 2.13-5. You must upgrade cmake to 2.8.4+dfsg

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