Re: r-cran-dbi changed from arch=any to arch=all which makes it "unvisible" in unstable (Was: New version of r-bioc-genomicranges breaks autopkgtests of r-bioc-summarizedexperiment in testing)

2018-05-10 Thread Dirk Eddelbuettel
On 10 May 2018 at 19:47, Paul Gevers wrote: | Hi Dir, | | On 10-05-18 14:04, Dirk Eddelbuettel wrote: | > Sorry about that. It must have been an old packaging oversight that only came | > to light now -- DBI never had a src/ directory and should have been 'all' all | > along. | >

Re: r-cran-dbi changed from arch=any to arch=all which makes it "unvisible" in unstable (Was: New version of r-bioc-genomicranges breaks autopkgtests of r-bioc-summarizedexperiment in testing)

2018-05-10 Thread Dirk Eddelbuettel
On 10 May 2018 at 11:54, Andreas Tille wrote: | Hi, | | a lot of r-* packages received mails about test suite errors like this: | | On Wed, May 09, 2018 at 02:16:29PM +0100, Paul Gevers wrote: | > ... | > [2] https://ci.debian.net/packages/r/r-bioc-summarizedexperiment/testing/amd64/ | | I

Bug#897238: Re: Bits about Intel MKL packaging -- Higher Priority than OpenBLAS

2018-05-02 Thread Dirk Eddelbuettel
On 2 May 2018 at 14:41, Lumin wrote: | Seems that things are getting more complicated. Recall that here we'are | going to prevent users from GPL violation in situations such as this | one: | | debootstrap; apt install libmkl-rt; apt install octave; octave ... (1) Are you sure? I do not think

Re: r-cran-git2r uses private header files of libgit2 (Was: Help with libgit2 needed to strip code copy from r-cran-git2r)

2018-01-11 Thread Dirk Eddelbuettel
I had some friendly emails with Stefan (git2r upstream) when he started the R package git2r (as I needed some features in my drat R package) and he expressed quite some frustration at working with libgit2 as it changed so much upstream. I know we collectively really hate embedding copies, but

Re: Usage of r-base-core_3.3.2-1 in pbuilder somehow broken

2016-12-18 Thread Dirk Eddelbuettel
On 18 December 2016 at 07:39, Dirk Eddelbuettel wrote: | | On 18 December 2016 at 09:27, Andreas Tille wrote: | | Hi, | | | | since yesterday I'm not able to build any r-* packages any more in | | pbuilder. I get something like: | | | | ... | | Selecting previously unselected package r-base

Re: Usage of r-base-core_3.3.2-1 in pbuilder somehow broken

2016-12-18 Thread Dirk Eddelbuettel
On 18 December 2016 at 09:27, Andreas Tille wrote: | Hi, | | since yesterday I'm not able to build any r-* packages any more in | pbuilder. I get something like: | | ... | Selecting previously unselected package r-base-core.^M | Preparing to unpack .../102-r-base-core_3.3.2-1_amd64.deb ...^M |

Re: Possible workaround

2016-12-15 Thread Dirk Eddelbuettel
On 15 December 2016 at 14:42, Christian Seiler wrote: | On 12/15/2016 02:37 PM, Dirk Eddelbuettel wrote: | > On 15 December 2016 at 14:26, Andreas Tille wrote: | > | Sorry, but I have no idea how since I'm totally clueless currently and | > | upstream also did not yet responded to t

Re: Possible workaround

2016-12-15 Thread Dirk Eddelbuettel
On 15 December 2016 at 14:26, Andreas Tille wrote: | This was discussed before. The output above is from a previous package | version where I simply forgot to actually use xvfb. Since this error | of mine the package was build without RGL - thus the warning. Later I | was using xvfb correctly

Re: Possible workaround

2016-12-14 Thread Dirk Eddelbuettel
On 14 December 2016 at 16:44, Christian Seiler wrote: | Hi, | | On 12/14/2016 04:16 PM, Dirk Eddelbuettel wrote: | > One quick thought: does it die in _compilation_ which we have seen with other | > (C++-heavy) packages? | | No, g++ works fine here. (The C++ file itself is trivial

Re: Possible workaround (was: Re: Help: r-cran-treescape does not build on i386, armel and armhf any more)

2016-12-14 Thread Dirk Eddelbuettel
with treescape version 1.10.17. Since I personally fell | totally clueless I'm forwarding this upstream and also CC Dirk | Eddelbuettel who is known for his insight and good contact to the R | community. May be somebody has a better clue rather than drastically | increasing the stack size on those

Re: Help (Was: Bug#699260: r-cran-genabel: FTBFS: error: subscript out of bounds)

2013-01-29 Thread Dirk Eddelbuettel
. | | ___ | Debian-med-packaging mailing list | debian-med-packag...@lists.alioth.debian.org | http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-packaging | | | -- | http://fam-tille.de -- Dirk Eddelbuettel | e...@debian.org | http

Re: Help (Was: Bug#699260: r-cran-genabel: FTBFS: error: subscript out of bounds)

2013-01-29 Thread Dirk Eddelbuettel
Also, CRAN has 1.7-3, you guys are at 1.7-0 of GenABEL. Maybe this even changed upstream... Dirk -- Dirk Eddelbuettel | e...@debian.org | http://dirk.eddelbuettel.com -- To UNSUBSCRIBE, email to debian-mentors-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact

Re: OpenMPI-bin missing on some arches (Was: mrbayes-mpi: uninstallable on mipsen and s390)

2011-06-29 Thread Dirk Eddelbuettel
On 29 June 2011 at 15:01, Andreas Tille wrote: | Hi, | | Your package is uninstallable on some archs: | | mrbayes-mpi/mips unsatisfiable Depends: openmpi-bin | mrbayes-mpi/mipsel unsatisfiable Depends: openmpi-bin | mrbayes-mpi/s390 unsatisfiable Depends: openmpi-bin | | I admit

Bug Free and Lintian Clean packages to give away

1998-12-02 Thread Dirk Eddelbuettel
I would like to give these Bug Free and Lintian Clean (TM) packages away. All packages have been converted to debhelper and should be easy, especially as a training ground for beginning maintainers. I would also be more than happy to help to ease transition. These packages are effectively