Re: C++ help needed for centrifuge

2017-11-26 Thread Walter Landry
Andreas Tille <andr...@an3as.eu> wrote: > Hi, > > On Sat, Nov 25, 2017 at 01:39:03PM -0800, Walter Landry wrote: >> > In file included from centrifuge_build.cpp:27:0: >> > bt2_idx.h: In static member function 'static std::pair<Ebwt*, >> > Ebwt*>

Re: C++ help needed for centrifuge

2017-11-25 Thread Walter Landry
ng: 'template class std::auto_ptr' is > deprecated [-Wdeprecated-declarations] This is only a warning, so you can ignore it. If you are feeling ambitious, the recommended fix is to replace all auto_ptr's with unique_ptr's and copies with moves(). Apparently, clang-modernize can do this automatically. Walter Landry

Re: No idea how to fix abs arguments in nanopolish

2017-08-31 Thread Walter Landry
t type is ptrdiff_t. http://en.cppreference.com/w/cpp/types/ptrdiff_t The line then becomes size_t difference = std::abs(static_cast(reference.size() - haplotype.size())); Or you could do it in two lines ptrdiff_t diff_signed (reference.size() - haplotype.size()); size_t difference = std::abs(diff_signed); Cheers, Walter Landry

Re: Preferred source: a fundamental question was Re: - #859130 ITP: lina

2017-07-03 Thread Walter Landry
Presumably you use this internal representation for a good reason. If it helps you, it can help others. Cheers, Walter Landry

Re: C++ help needed for psortb

2017-04-18 Thread Walter Landry
ecipe for target 'hmm-binding.o' failed It is difficult to know without spending more time, but I would try changing this to thresh.autocut = threshold_s::CUT_NONE; Cheers, Walter Landry

ITP's not showing up on debian-devel?

2016-11-08 Thread Walter Landry
there. Did I mess something up in the ITP, is there some moderation queue, or are my emails getting eaten? Thank you, Walter Landry

Re: Bug#570621: Parsing output = derivative work?

2011-03-08 Thread Walter Landry
, git is largely comprised of many small utilities that communicate over pipes and command-line arguments. Cheers, Walter Landry wlan...@caltech.edu -- To UNSUBSCRIBE, email to debian-mentors-requ...@lists.debian.org with a subject of unsubscribe. Trouble? Contact listmas...@lists.debian.org

Re: upstream has license which is an edited GPL

2008-08-04 Thread Walter Landry
may be similar). Cheers, Walter Landry [EMAIL PROTECTED]

Re: [Pkg-alsa-devel] RFS: alsa-tools

2005-01-31 Thread Walter Landry
the DFSG. For example, if there are some non-free, but distributable, files in the original tar ball, those have to be taken out and a new original tar ball made. Regards, Walter Landry [EMAIL PROTECTED] -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of unsubscribe. Trouble? Contact