Andreas Tille <andr...@an3as.eu> wrote:
> On Sat, Nov 25, 2017 at 01:39:03PM -0800, Walter Landry wrote:
>> > In file included from centrifuge_build.cpp:27:0:
>> > bt2_idx.h: In static member function 'static std::pair<Ebwt*,
>> > Ebwt*>
ng: 'template class std::auto_ptr' is
> deprecated [-Wdeprecated-declarations]
This is only a warning, so you can ignore it. If you are feeling
ambitious, the recommended fix is to replace all auto_ptr's with
unique_ptr's and copies with moves(). Apparently, clang-modernize can
do this automatically.
The line then becomes
size_t difference = std::abs(static_cast(reference.size() -
Or you could do it in two lines
ptrdiff_t diff_signed (reference.size() - haplotype.size());
size_t difference = std::abs(diff_signed);
Presumably you use this internal representation for a good reason. If
it helps you, it can help others.
ecipe for target 'hmm-binding.o' failed
It is difficult to know without spending more time, but I would try
changing this to
thresh.autocut = threshold_s::CUT_NONE;
there. Did I mess something up in the ITP, is there some moderation
queue, or are my emails getting eaten?
, git is largely comprised of many small
utilities that communicate over pipes and command-line arguments.
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may be similar).
the DFSG. For example, if there are some
non-free, but distributable, files in the original tar ball, those
have to be taken out and a new original tar ball made.
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