Yet another list statistics for debian-mentors

2009-01-17 Thread Andreas Tille
Hi, as you can read in my lightning talk at DebConf http://people.debian.org/~tille/talks/200808_lightning/ I did some investigation on who is frequently posting on our mailing lists. I now created graphs until end of last year and write a short summary for those lists I regard worth a

How to debug problems in postinst using debconf / dbconfig common

2009-01-23 Thread Andreas Tille
Hi, I try to build a package from mlstdbnet for Debian Med. The packaging stuff is available here: Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/mlstdbnet/trunk/?rev=0sc=0 Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/mlstdbnet/trunk/ and you can obtain

Re: debian OID / dicom3tools packaging

2009-01-27 Thread Andreas Tille
On Tue, 27 Jan 2009, Mathieu Malaterre wrote: $ echo med | od -b 000 155 145 144 012 1.3.6.1.4.1.9586.155.145.144 This would be the toplevel (root) of all UID generated from the dicom3tools package. Hmm, I'm not sure whether this helps. May be I missunderstood the problem but is the

Re: MUMmer patches and Artistic license.

2009-07-28 Thread Andreas Tille
On Sun, Jul 12, 2009 at 10:50:10PM +0900, Charles Plessy wrote: This patch is a good idea -- fixed length buffers are rarely considered user-friendly. However, it is executed poorly; it's not ready for upstream in its current state. Hi, thank you for the comment. I will stop to

How to detect 32 or 64 bit at build time?

2009-09-07 Thread Andreas Tille
Hi, the new version of arb I want to package requires to set a variable ARB_64=0/11=compile 64 bit version to specify whether it will be compiled on 32 or 64 bit architecture. Is there any safe way to set this variable automatically from environment? I expected dpkg-architecture

Re: How to detect 32 or 64 bit at build time?

2009-09-07 Thread Andreas Tille
On Mon, Sep 07, 2009 at 10:50:54AM +, Bart Martens wrote: I guess that you're looking for: dpkg --print-architecture No. The result is equivalent to dpkg-architecture | grep -w DEB_BUILD_ARCH I'm locking for something that responds with 0 for 32 bit architectures and 1 for 64 bit

Re: How to detect 32 or 64 bit at build time?

2009-09-07 Thread Andreas Tille
On Mon, Sep 07, 2009 at 12:58:59PM +0200, Sven Joachim wrote: How about DEB_HOST_ARCH_BITS? This needs dpkg 1.15.4, though. Sorry, that should have been DEB_BUILD_ARCH_BITS. Cool, the version in unstable is the key. Thanks for the hint Andreas. -- http://fam-tille.de Klarmachen

How exactly can I use add_command_options to prevent compressing pdfs

2009-09-29 Thread Andreas Tille
Hi, I found in the log of #543392 that there is now a way implemented since debhelper 7.3.16 to prevent dh_compress from zipping everything in the doc directory (especially I want to do an --exclude=.pdf). But I have actually no idea how to *use* this command. Is there any example syntax in a

Re: MUMmer patches and Artistic license.

2009-10-05 Thread Andreas Tille
On Sun, Jul 12, 2009 at 10:50:10PM +0900, Charles Plessy wrote: Hi, thank you for the comment. I will stop to apply this patch until a better solution is found. Charles, could you please give an update of the status of mummer package? Kind regards Andreas. -- http://fam-tille.de --

Re: dpkg-shlibdeps: couldn't find library [...]

2007-11-02 Thread Andreas Tille
On Fri, 2 Nov 2007, David Paleino wrote: ... dpkg-shlibdeps: failure: couldn't find library libvtkpxRegistrationTCL.so (note: only packages with 'shlibs' files are looked into). I think you reached a point were I personally would consider asking in debian-devel list (in case there would be no

Re: RFS: mustang, btk-core

2008-01-10 Thread Andreas Tille
On Wed, 9 Jan 2008, Morten Kjeldgaard wrote: Upstream does not build shared libraries, so there is no need for it. I learned that Debian users sooner or later ask for it (even if neither upstream nor yourself thought there would be a need for it). So at least be prepared. :) I have chosen

Re: RFS: mustang, btk-core

2008-01-10 Thread Andreas Tille
Hi, I just took the freedom to really upload the Debian packaging stuff of mustang and btk-core to our SVN: http://cia.vc/stats/project/Debian-Med/.message/51b9d Morten, feel free to revert the group maintainance things I added in a separate check in if you don't feel happy about this. If

Re: RFS: adun.app (updated package):wq

2008-01-20 Thread Andreas Tille
On Mon, 21 Jan 2008, Charles Plessy wrote: For biology-related packages, do not hesitate to CC [EMAIL PROTECTED] PS: maybe we (debia-med) should adopt the package ? Definitely. If the package is orphaned we can easily do this without stepping on someones shoes. So I'd be in favour of

Re: BALLView - a molecular viewer and modeling tool

2007-01-26 Thread Andreas Tille
On Fri, 26 Jan 2007, Andreas Moll wrote: I have uploaded a new version of the package. Well, I checked your work offline and my comments are concerning the version from tomorrow morning. So feel free to ignore issues that might be voided by your new version. I have changed the control file

Re: BALLView - a molecular viewer and modeling tool

2007-01-26 Thread Andreas Tille
On Fri, 26 Jan 2007, Kevin B. McCarty wrote: I'm pretty sure you meant to say Architecture: any here. (For anyone who might need clarification: an Architecture: any package must Yes, Thanks for the hint. I hope this didn't come across as nitpicky, just wanted to make sure things were clear

Re: BALLView - a molecular viewer and modeling tool

2007-01-28 Thread Andreas Tille
On Sun, 28 Jan 2007, Andreas wrote: 4. debian/compat The current debhelper version is 5.x. So if you have no certain reason (like backporting to Sarge for instance), I would recommend to use debhelper 5 here. I used the version 4 because otherwise I could not build the

Re: BALLView: new package version

2007-01-29 Thread Andreas Tille
On Sun, 28 Jan 2007, Andreas Moll wrote: there is a now a new improved package version available. Got it and builded the package. My main concerns are solved and I would regard the package nearly ready for upload. There is just one issue if I run the demo I get the following output:

Re: RFS: libsbml

2007-01-29 Thread Andreas Tille
On Mon, 29 Jan 2007, Steffen Moeller wrote: Dear Moriyoshi and dear Changyan, please get in contact with each other for an exchange of ideas for the package. Whoever wishes to go forward with the maintenance should do so. A SVN-based group maintenance would be preferable from my point of view

Re: BALLView: new package version

2007-01-29 Thread Andreas Tille
On Mon, 29 Jan 2007, Andreas Moll wrote: Your welcome, it is in my own interest to get this package in perfect shape as soon as possible. :) To stop the cross-list posting I include only mentors (please CC me, I'm not subscribed): Did I understand current freeze state right that uploads to

Re: BALLView: new package version

2007-01-29 Thread Andreas Tille
On Mon, 29 Jan 2007, Andreas Moll wrote: This may mean that this code has to be reimplemented... OK. Just keep me informed if you are ready and keep on the good work. (Thanks to Margarita for the hint about uploading.) Kind regards Andreas. -- http://fam-tille.de -- To

Re: RFS: libsbml

2007-02-05 Thread Andreas Tille
On Mon, 5 Feb 2007, Changyan Xie wrote: I have looked over all the patch stuff! Your work are excellent! But I have a little opinion on the libsbml-doc package and the build dependence to latex2html: the upstream offer a seperated libsbml-doc source package,which contained compiled html

Re: RFS: libsbml

2007-02-05 Thread Andreas Tille
On Tue, 6 Feb 2007, Changyan Xie wrote: Ok, I admit that the real problem is that the dependence to latex2html require tetex-extra and a lot of other packages,and after this additional dependence, my system require another 100 M disk space. If it is about bloating your production system I

Re: RFS: libsbml

2007-02-06 Thread Andreas Tille
On Tue, 6 Feb 2007, Charles Plessy wrote: What is happening to a source package with build-dependancies on a non-free package. Can it produce a binary packages for main, with only a -doc package going in contrib? Do the Debian buildds have non-free enabled? (I doubt...) It is quite a sloppy

Re: Meshlab and Qutemol

2007-04-24 Thread Andreas Tille
On Tue, 24 Apr 2007, Teemu Ikonen wrote: ... I could go on and package Meshlab with a static copy of VCG included, but if there's someone with suitable hardware, time and interest to package Qutemol, then maybe VCG should be in a separate package. Sounds good. I personally would prefer if

Re: Meshlab and Qutemol

2007-06-03 Thread Andreas Tille
On Sun, 3 Jun 2007, Teemu Ikonen wrote: I've made packages of Meshlab with the relevant parts of the VCG library included in the source (separate packaging does not make much sense ATM, since VCG upstream does not even have a build system). The source package is at

Re: Sofa-framework: Again QT help needed

2012-01-01 Thread Andreas Tille
On Sat, Dec 31, 2011 at 12:41:11PM +0200, Boris Pek wrote: Hi Andreas, There is typo here. Try correct string: QT += qt3support While I have no experience with cmake I'm not sure about the difference between += and *= I guess the vraiant with '*' was intended. In any case I can confirm that

Re: Sofa-framework: Again QT help needed / Re: [Sofa-devel] Debian packaging

2012-01-03 Thread Andreas Tille
Hi Eric, to give an update of this issue I uploaded the latest status of packaging to http://people.debian.org/~tille/packages/sofa-framework/ It shows problems building the plugins as you have noticed. As I said in my latest (private) mail I really needed to add LIBS *= -lQt3Support

Help with java package (beast-mcmc) needed

2012-01-08 Thread Andreas Tille
Hi, I tried building a package from beast and uploaded for simlicity this stuff to http://people.debian.org/~tille/packages/beast-mcmc-help-wanted/ It contains six executable files in /usr/bin. Three of them are starting nicely. These are beast-mcmc, beauti and loganalyser. However, the

Re: Bug#653799: FTBFS: CMake Error at cmake_modules/FindOpenCV.cmake:77 (file): file STRINGS file /usr/include/opencv/cvver.h cannot be read.

2012-01-09 Thread Andreas Tille
Hi, On Fri, Dec 30, 2011 at 07:08:09PM -0600, Steve M. Robbins wrote: Source: sitplus Version: 1.0.1-2 Severity: serious Justification: fails to build from source Package failed to build in a clean sid chroot: -- checking for one of the modules 'glib-2.0' -- Found GLib2: glib-2.0

Re: Help with java package (beast-mcmc) needed

2012-01-10 Thread Andreas Tille
Hi Sylvestre, On Tue, Jan 10, 2012 at 06:09:53AM +0100, Sylvestre Ledru wrote: Exception in thread main java.lang.NoClassDefFoundError: jam/console/ConsoleApplication Usually, this kind of problem is due to the CLASSPATH not containing jam.jar $ grep jam debian/rules export CLASSPATH :=

Re: Help with java package (beast-mcmc) needed

2012-01-10 Thread Andreas Tille
On Tue, Jan 10, 2012 at 12:01:57PM +0100, Olivier Sallou wrote: Usually, this kind of problem is due to the CLASSPATH not containing jam.jar $ grep jam debian/rules export CLASSPATH :=

Help with architecture not supporting SSE (Was: Bug#656755: libhmsbeagle FTBFS on everything except amd64)

2012-01-22 Thread Andreas Tille
is welcome Andreas. On Sat, Jan 21, 2012 at 09:50:16PM +, Adam D. Barratt wrote: On Sat, 2012-01-21 at 17:16 +0100, Andreas Tille wrote: On Sat, Jan 21, 2012 at 03:00:25PM +, peter green wrote: It seems things are a little more complex than they first appeared

Re: Help with architecture not supporting SSE (Was: Bug#656755: libhmsbeagle FTBFS on everything except amd64)

2012-01-24 Thread Andreas Tille
On Wed, Jan 25, 2012 at 01:37:59AM +, peter green wrote: Andreas Tille wrote: Hi, I have to admit that I do not have any experience with SSE issues. Any advise what to do in cases like this (see build logs linked below)? From looking at the build logs it looks like it is trying

Re: Help with architecture not supporting SSE (Was: Bug#656755: libhmsbeagle FTBFS on everything except amd64)

2012-01-25 Thread Andreas Tille
Hi Peter, many thanks for the patch which was in fact helpful to solve the problem. On Wed, Jan 25, 2012 at 11:04:13AM +, peter green wrote: Ok I took pity on you and took a look at the Makefile.am in that directory, turns out it wasn't that hard to disable building of the CPU with SSE

Re: Bug#653799: FTBFS: CMake Error at cmake_modules/FindOpenCV.cmake:77 (file): file STRINGS file /usr/include/opencv/cvver.h cannot be read.

2012-02-01 Thread Andreas Tille
Hi Nobuhiro, On Thu, Feb 02, 2012 at 04:06:12AM +0900, Nobuhiro Iwamatsu wrote: tags 653799 patch thanks ... I checked this bug. Because /usr is set to OpenCV_DIR, /usr/share/OpenCV/OpenCVConfig.cmake file has not been read. Moreover, when there is no /usr/OpenCVConfig.cmake, another

Re: Bug#653799: FTBFS: CMake Error at cmake_modules/FindOpenCV.cmake:77 (file): file STRINGS file /usr/include/opencv/cvver.h cannot be read.

2012-02-01 Thread Andreas Tille
patch kindly provided by Nobuhiro Iwamatsu +iwama...@debian.org (thanks) +Closes: #653799 + * debian/control: Build-Depends: libcv-dev (= 2.3.1-7) + + -- Andreas Tille ti...@debian.org Mon, 09 Jan 2012 10:10:13 +0100 + sitplus (1.0.1-2) unstable; urgency=low * debian/patches

Re: Bug#653799: FTBFS: CMake Error at cmake_modules/FindOpenCV.cmake:77 (file): file STRINGS file /usr/include/opencv/cvver.h cannot be read.

2012-02-02 Thread Andreas Tille
Hi, On Thu, Feb 02, 2012 at 08:00:20AM +0100, Andreas Tille wrote: This version is not yet available on the mirror I'm using. Once it is there I will test the following changes: I can confirm that I was able to build after adding to opencv libs explicitely to the linker flags which now looks

Re: Bug#639995: epigrass does not start on GNOME

2012-02-02 Thread Andreas Tille
Hi Davide, thanks for using EpiGrass and I hope to get it up and running for your study. On Thu, Feb 02, 2012 at 12:21:27PM +0100, erB@rilloo wrote: Hello Jakub, I still have the error reported into bug 639995 (epigrass: missing dependency on python-pkg-resources): Traceback (most recent

Proable multiarch related problem in finding header file (Was: Problem finding posix_types_32.h when using pbuilder on the fis-gtm package)

2012-02-13 Thread Andreas Tille
Hi, just a comment on this: I suspect a multiarch issue and http://lists.debian.org/debian-devel-announce/2011/06/msg2.html Multiarch handling of header files (/usr/include) will require more per-package attention, ... so Luis is asking for some hints how to deal with this like the

Re: Proable multiarch related problem in finding header file (Was: Problem finding posix_types_32.h when using pbuilder on the fis-gtm package)

2012-02-14 Thread Andreas Tille
On Tue, Feb 14, 2012 at 09:47:23AM +0100, Mathieu Malaterre wrote: Andreas, Doing a quick check on packages.d.o I can see the file your are talking about. However: http://packages.debian.org/search?suite=sidarch=anymode=pathsearchon=contentskeywords=posix_types.h returns an empty

Any hint for help2man if programm does not accept help option

2012-04-01 Thread Andreas Tille
Hi, I would like to add man pages to a program which does not accept any help option but if you call it without any option it outputs the help information which would be needed to create the man page. Is there any trick to convince help2man to work on this anyway? Kind regards Andreas.

Re: Any hint for help2man if programm does not accept help option

2012-04-02 Thread Andreas Tille
Hi, On Mon, Apr 02, 2012 at 07:45:46AM +0200, Gergely Nagy wrote: help2man -h $program will probably do the trick. No: $ help2man -h help2man help2man: can't get `' info from help2man That happens because help2man without arguments will output to stderr. Add --no-discard-stderr,

Help writing a watch file for rnahybrid

2012-04-19 Thread Andreas Tille
Hi, I tried to write a watch file for rnahybrid package: version=3 http://bibiserv.techfak.uni-bielefeld.de/download/tools/rnahybrid.html RNAhybrid-(.*)-src\.tar\.gz The first question is: Why does it not find a new version at all: $ uscan --verbose -- Scanning for watchfiles in . -- Found

Re: Help writing a watch file for rnahybrid

2012-04-19 Thread Andreas Tille
Hi Paul, On Thu, Apr 19, 2012 at 02:54:42PM +0800, Paul Wise wrote: On Thu, Apr 19, 2012 at 2:40 PM, Andreas Tille wrote: The first question is: Why does it not find a new version at all: uscan relies solely on links and since there are no links to the tarballs, it cannot find any

Parsing single debian/control file using python-debian

2012-04-19 Thread Andreas Tille
Hi, I'm unsure whether this might be the proper mailing list to ask questions like this - but I have no better idea. I intend to parse some machine readable files in some team maintained packages. When trying something like ctrl = open('debian/control','r') for ctrlstanza in

Help needed to fix g++ 4.7 error [Was: Bug#667120: bowtie: ftbfs with GCC-4.7]

2012-04-22 Thread Andreas Tille
Hi, similarly to the plink case I can not found an easy solution for this problem. Kind regards Andreas. - Forwarded message from Matthias Klose d...@debian.org - Date: Tue, 03 Apr 2012 23:08:03 + From: Matthias Klose d...@debian.org To: mainto...@bugs.debian.org Subject:

Help needed [Was: Bug#667325: plink: ftbfs with GCC-4.7]

2012-04-22 Thread Andreas Tille
Hi, I tried to follow the hints to fix this problem but failed. Any more skilled C++ programmer than me who might have a clue? Kind regards Andreas. - Forwarded message from Matthias Klose d...@debian.org - Date: Tue, 03 Apr 2012 23:11:40 + From: Matthias Klose

Help needed to fix gcc 4.7 bug in jellyfish package

2012-05-02 Thread Andreas Tille
Hi, I tried to fix the problem in the jellyfish package but the general hints given did not helped me really. Any more precise help to fix this problem: parse_dna.cc:97:3: error: narrowing conversion of '-3' from 'int' to 'const uint_t {aka const long unsigned int}' inside { } is ill-formed in

Re: Help needed to fix gcc 4.7 bug in jellyfish package

2012-05-03 Thread Andreas Tille
Hi, On Wed, May 02, 2012 at 07:32:50AM +, Sune Vuorela wrote: On 2012-05-02, Andreas Tille andr...@an3as.eu wrote: Hi, I tried to fix the problem in the jellyfish package but the general hints given did not helped me really. Any more precise help to fix this problem

Re: Help needed to fix gcc 4.7 bug in jellyfish package

2012-05-03 Thread Andreas Tille
, 2012 at 09:52:09AM +0200, Michael Wild wrote: On 05/02/2012 08:33 AM, Andreas Tille wrote: Hi, I tried to fix the problem in the jellyfish package but the general hints given did not helped me really. Any more precise help to fix this problem: parse_dna.cc:97:3: error: narrowing

Re: is wheezy frozen already?

2012-05-14 Thread Andreas Tille
On Sat, May 12, 2012 at 09:57:42AM +, Daniel Pocock wrote: I notice that packages have not been taken from the queue for 3 weeks: http://ftp-master.debian.org/new.html I'd rather see a correlation to the fact that some members of the ftpmaster team might be short in time for private

[Help] New version of ImageJ does not build in pbuilder because of lacking DISPLAY variable

2012-06-04 Thread Andreas Tille
Hi, I just commited packaging stuff for the latest ImageJ version to SVN[1] but I failed in building when using pdebuild: build: [copy] Copying 1 file to /tmp/buildd/imagej-1.46o/build [copy] Copying 1 file to /tmp/buildd/imagej-1.46o/build [copy] Copying 1 file to

Ruby help needed (Was: Bug#676114: wordnet: FTBFS: debian/wn-for-goldendict.rb:465: invalid multibyte char (US-ASCII))

2012-06-05 Thread Andreas Tille
Hi, Dmitry E. Oboukhov un...@debian.org has added some Ruby code to wordnet packaging (debian/wn-for-goldendict.rb) which worked for two years and at least up to Fri, 01 Jun 2012 13:45:40 +0200 when I did the last upload. Yesterday I wanted to try to fix two (unrelated) open bugs and realised

Re: Ruby help needed (Was: Bug#676114: wordnet: FTBFS: debian/wn-for-goldendict.rb:465: invalid multibyte char (US-ASCII))

2012-06-05 Thread Andreas Tille
Hi Sam, On Tue, Jun 05, 2012 at 11:26:42AM -0400, Sam Ruby wrote: On 06/05/2012 10:08 AM, Andreas Tille wrote: debian/wn-for-goldendict.rb:465: invalid multibyte char (US-ASCII) debian/wn-for-goldendict.rb:465: invalid multibyte char (US-ASCII) debian/wn-for-goldendict.rb:465: syntax error

Re: Bug#676114: Ruby help needed (Was: Bug#676114: wordnet: FTBFS: debian/wn-for-goldendict.rb:465: invalid multibyte char (US-ASCII))

2012-06-05 Thread Andreas Tille
Hi Steve, On Tue, Jun 05, 2012 at 06:10:55PM +0100, Steve McIntyre wrote: Any better hint? It sounds like you should replace the functionality of the script in a more suitable language, specifically: * one you (and other maintainers) understand * one that's stable and supported on all

Re: Bug#676114: Ruby help needed (Was: Bug#676114: wordnet: FTBFS: debian/wn-for-goldendict.rb:465: invalid multibyte char (US-ASCII))

2012-06-05 Thread Andreas Tille
On Tue, Jun 05, 2012 at 06:35:28PM +0100, Steve McIntyre wrote: Sounds like you made a mistake, I'm afraid. :-( My barrier to revert this mistake is low. If there is no simple solution in three days (OK, I'll be offline weekend+Monday - so there is some additional delay) - I'll kick the binary

Re: Ruby help needed (Was: Bug#676114: wordnet: FTBFS: debian/wn-for-goldendict.rb:465: invalid multibyte char (US-ASCII))

2012-06-06 Thread Andreas Tille
Hi, On Wed, Jun 06, 2012 at 10:08:24AM +0400, Dmitry E. Oboukhov wrote: I see you have already patched the script. At first thanks to thsoe people who quickly provided patches. Hoewever, I decided to follow the hint to Build-Depend on ruby 1.8 because in this case we not only know that the

Re: [Help] New version of ImageJ does not build in pbuilder because of lacking DISPLAY variable

2012-06-06 Thread Andreas Tille
Hi Vincent, On Mon, Jun 04, 2012 at 12:37:45PM +0200, Vincent Fourmond wrote: I can confirm that debuild works fine because there is a properly setup X environment. Any clue?  The hint from Steve[2] did not ring a bell when I was looking at the lines of code where the problem occured.

uscan ends up with 500 Can't connect host:443 (certificate verify failed)

2012-07-09 Thread Andreas Tille
Hi, at svn://svn.debian.org/svn/debian-med/trunk/packages/camitk/trunk I did some preparation for a package including a watch file. Unfortunately I get: $ uscan --verbose --force-download -- Scanning for watchfiles in . -- Found watchfile in ./debian -- In debian/watch, processing watchfile

Re: Bug#681230: RFS: gtkdataboxmm/0.9.1-1 [ITP]

2012-07-12 Thread Andreas Tille
Hi Daniele, most certainly you know that libgtkdatabox (without mm) is maintained in the Debian Science team. I admit it is not maintained at the standards I would like to apply usually and I'm one of the a bit lazy uploaders (the other one seems to have vanished at all). I used your ITP as a

Re: Bug#681230: RFS: gtkdataboxmm/0.9.1-1 [ITP]

2012-07-14 Thread Andreas Tille
Hi, On Fri, Jul 13, 2012 at 11:39:02AM +0200, Daniele E. Domenichelli wrote: On 12/07/12 16:52, Andreas Tille wrote: I would volunteer to check and sponsor your package and I would be really happy if you could also have some look into libgtkdatabox to enhance maintenance. Thanks!! I'm

Re: Bug#681230: RFS: gtkdataboxmm/0.9.1-1 [ITP]

2012-07-16 Thread Andreas Tille
Hi Daniele, On Mon, Jul 16, 2012 at 10:50:29AM +0200, Daniele E. Domenichelli wrote: On 14/07/12 22:39, Andreas Tille wrote: Just tell me if you are accepted to Debian Science team (I'm not admin) and you have commited the packaging. Meanwhile I have uploaded libgtkdatabox and I might

Help needed in gcc-4.7 - cython issue

2012-07-24 Thread Andreas Tille
Hi, I did run into some trouble with a fresh package which is prepared in SVN at Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/python-biom-format/trunk/ You can obtain the source via `uscan --force-download` or `make -f debian/rules get-orig-source` . The package builds nicely

[k...@roeckx.be: Bug#680436: sra-sdk: FTBFS: gcc/i386/atomic32.h:125:5: error: impossible constraint in 'asm']

2012-07-24 Thread Andreas Tille
Hi, I tagged this bug help because I admit I do not have any clue about assembler programming and atomic operations. I did also forewarded the problem upstream. Any hint would be welcome Andreas. - Forwarded message from Kurt Roeckx k...@roeckx.be - Date: Thu, 5 Jul 2012

Help with gcc-4.7 needed (Was: poco: FTBFS with multiarch libmysqlclient-dev)

2012-07-26 Thread Andreas Tille
the attention it would need. Please help fixing the problem to make sure the reverse depends can stay in testing. Kind regards Andreas. - Forwarded message from Andreas Tille andr...@an3as.eu - Date: Thu, 26 Jul 2012 14:23:26 +0200 From: Andreas Tille andr...@an3as.eu To: Mathieu Malaterre

Re: Help with gcc-4.7 needed (Was: poco: FTBFS with multiarch libmysqlclient-dev)

2012-07-26 Thread Andreas Tille
On Thu, Jul 26, 2012 at 04:55:02PM +0200, Michael Wild wrote: Hi Andreas Reading the error message, it seems that there is a forward-declaration of replaceInPlace(...) is missing before it is used in String.h:448. It seems like simply reversing the order of declaration should fix the

Need help for watch file

2012-08-27 Thread Andreas Tille
Hi, the watch file for the mriconvert package[1] is obviosely not working because http://lcni.uoregon.edu/~jolinda/MRIConvert/ upstream does not mind numbering its mriconvert_sources.zip sources. However, there should be some chance to drain the current version from other files on this page.

Re: Need help for watch file

2012-08-28 Thread Andreas Tille
Hi, On Tue, Aug 28, 2012 at 12:12:08AM +0800, Paul Wise wrote: Best ask them to fix that and point them at our upstream guide while you are at it: http://wiki.debian.org/UpstreamGuide Right, but I guess chances are low ... However, there should be some chance to drain the current

Bug#681230: [ftpmas...@ftp-master.debian.org: libgtkdatabox_0.9.1.3-1_amd64.changes ACCEPTED into experimental, experimental]

2012-09-02 Thread Andreas Tille
-master.debian.org - Date: Fri, 31 Aug 2012 19:00:16 + From: Debian FTP Masters ftpmas...@ftp-master.debian.org To: Debian Science Maintainers debian-science-maintain...@lists.alioth.debian.org, Andreas Tille ti...@debian.org Subject: libgtkdatabox_0.9.1.3-1_amd64.changes ACCEPTED

Need help for watch file

2012-09-14 Thread Andreas Tille
Hi, to enable properly downloading the volview sources I tried the following watch file: version=3 opts=\ dversionmangle=s/[~\+]dfsg//,\ downloadurlmangle=s/VolView-([\d\.]+)-Linux-x86_64.sh/VolViewSrc.tar.gz/,\ filenamemangle=s/VolView(-[\d\.]+)-Linux-x86_64.sh/VolViewSrc$1.tar.gz/ \

Another watch file problem

2012-09-14 Thread Andreas Tille
Hi, I stumbled upon another watch file problem for package visad which is available via ftp. I considered the following watch file a good idea opts=downloadurlmangle=s?$?/visad_src.jar?,filenamemangle=s?$?/visad_src.jar? \ ftp://ftp.ssec.wisc.edu/pub/visad-([\d\.]+) but got the following

Bug#689041: RFS: orthanc/0.2.1-3 [ITP] -- Lightweight, RESTful DICOM server for healthcare and medical research

2012-10-06 Thread Andreas Tille
Hi Sébastien, On Sun, Sep 30, 2012 at 06:29:33PM +0200, Mathieu Malaterre wrote: Salut Sébastien, Have you thought of maintaining your package within the debian-med umbrella org ? http://www.debian.org/devel/debian-med/ Just back from vacation I read your conversation about orthanc

Bug#673087: RFS: the-powder-toy/78.1-1 [ITP] -- Physics sandbox game

2012-10-12 Thread Andreas Tille
Hi Aditya, not that I would specifically interested in this very package (just stumbled upon it because of the physics keyword) I think you could enhance your chances to find a sponsor if you would more closely join the pkg-games team (by for instance following the group packaging policy and

Help needed to download source via sf.net redirector

2012-10-16 Thread Andreas Tille
Hi, I try to write a watch file for pcalendar which is available at http://sourceforge.net/projects/linuxorg/files/PeriodicCalendar/pcalendar-3.3/ Unfortunately neither http://sf.net/pcalendar/pcalendar-src-(\d[\d\.]+)\.(?:tgz|tbz|txz|(?:tar\.(?:gz|bz2|xz))) nor

Any idea how to write watch file for codeplex hosted sources?

2012-11-05 Thread Andreas Tille
Hi, I have spent some time into writing a watch file for https://csb.codeplex.com/releases/ but failed and some research on mailing lists revealed some other failures. Any idea whether a clever mangling might help anyway? And yes, I will ask my sponsee to teach upstream to find more easy

Re: Any idea how to write watch file for codeplex hosted sources?

2012-11-05 Thread Andreas Tille
Hi, On Mon, Nov 05, 2012 at 08:29:24PM +0600, Andrey Rahmatullin wrote: On Mon, Nov 05, 2012 at 03:23:02PM +0100, Andreas Tille wrote: I have spent some time into writing a watch file for https://csb.codeplex.com/releases/ but failed and some research on mailing lists revealed

Re: jquery.js from Doxygen in documentation, what to do about it

2012-11-24 Thread Andreas Tille
On Fri, Nov 23, 2012 at 12:01:05PM -0800, Russ Allbery wrote: For right now, I think the best thing for the Doxygen *clients* to do is just ignore this issue. It may need a bug against doxygen, though (and possibly some help for the Doxygen maintainer). I'm just wild-guessing that the new

How to specify a = X Y Depends (Was: Packaging GNU Health)

2012-11-25 Thread Andreas Tille
Hi Emilien, On Sat, Nov 24, 2012 at 11:54:59AM +0100, Emilien Klein wrote: ... As a general question: If package A depends on a specific set of releases (like in this case Tryton 2.4.X), how do we usually handle the case where the libraries are updated before the package depending on the

Bug#694632: ITP: prime-phylo -- Bayesian estimation of gene trees taking the species tree into account

2012-11-29 Thread Andreas Tille
Hi Erik, it seems I missed your ITP - otherwise I would have most probably pinged you whether you intent to do the packaging inside the Debian Med team. We try to inject medical and microbiological software into Debian and your ITP seems to fit perfectly into our biology task[1]. So I would

Bug#694632: ITP: prime-phylo -- Bayesian estimation of gene trees taking the species tree into account

2012-12-06 Thread Andreas Tille
) and will check whether it is ready for upload. Kind regards and thanks so far for your work Andreas. On Thu, Nov 29, 2012 at 09:31:45AM +0100, Andreas Tille wrote: Hi Erik, it seems I missed your ITP - otherwise I would have most probably pinged you whether you intent to do the packaging

Bug#694632: Bug#684039: ITP: prime-phylo -- Bayesian estimation of gene trees taking the species tree into account

2012-12-11 Thread Andreas Tille
Hi Erik, On Tue, Dec 11, 2012 at 03:37:28PM +0100, Erik Sjölund wrote: Hi Andreas, I've now created the account eriksjolund-guest at alioth.debian.org Fine I've just added you to the Debian Med team. I would prefer to use git for the repository. OK. If I understand you correctly, the next

Bug#694632: Bug#684039: ITP: prime-phylo -- Bayesian estimation of gene trees taking the species tree into account

2012-12-17 Thread Andreas Tille
Hi Erik, thanks for your work on prime-phylo. On Mon, Dec 17, 2012 at 11:06:28AM +0100, Erik Sjölund wrote: I have now created: http://anonscm.debian.org/gitweb/?p=debian-med/prime-phylo.git Looks good so far with one exception I've found: Please check the copyright by using $ cme fix

Bug#694632: Bug#684039: ITP: prime-phylo -- Bayesian estimation of gene trees taking the species tree into account

2012-12-17 Thread Andreas Tille
Hi Erik, On Mon, Dec 17, 2012 at 02:37:30PM +0100, Erik Sjölund wrote: I followed your suggestion and changed the license short name to MTL. OK. Regarding the file src/cxx/libraries/prime/beep2blas.hh when I started packaging Prime I tried to investigate where the file content came

Bug#694632: Bug#684039: Bug#694632: Bug#684039: ITP: prime-phylo -- Bayesian estimation of gene trees taking the species tree into account

2012-12-17 Thread Andreas Tille
On Mon, Dec 17, 2012 at 05:24:00PM +0100, Erik Sjölund wrote: I made a new upstream release http://prime.sbc.su.se/download/prime-phylo-1.0.11.tar.gz where I added the extra copyright statement // Copyright: Modifications to the original file by Bengt Sennblad bengt.sennb...@ki.se

Bug#694632: Bug#684039: Bug#694632: Bug#684039: ITP: prime-phylo -- Bayesian estimation of gene trees taking the species tree into account

2012-12-18 Thread Andreas Tille
Hi Erik, On Tue, Dec 18, 2012 at 10:06:15AM +0100, Erik Sjölund wrote: I think the documentation http://debian-med.alioth.debian.org/docs/policy.html was not so clear about how to handle a new upstream release. Anyway when I also found

Bug#694632: Bug#684039: ITP: prime-phylo -- Bayesian estimation of gene trees taking the species tree into account

2012-12-18 Thread Andreas Tille
Hi Erik On Tue, Dec 18, 2012 at 04:18:26PM +0100, Erik Sjölund wrote: On Tue, Dec 18, 2012 at 2:30 PM, Andreas Tille andr...@an3as.eu wrote: Sometimes it is hard to describe things which are clear to the people who are comfortable with the procedure to describe it for newcomers - so any

Re: Status of SIGAR (Was: InVesalius packaging)

2010-03-29 Thread Andreas Tille
On Mon, Mar 29, 2010 at 10:11:09AM -0300, Tatiana Al-Chueyr wrote: Until now, we haven't had advances on SIGAR packaging [1]. How should we proceed? I had a (quick) look at Thiagos packaging[2] and while the package builds somehow there are several lintian warnings. If you try lintian -i

Re: Status of SIGAR (Was: InVesalius packaging)

2010-03-29 Thread Andreas Tille
On Mon, Mar 29, 2010 at 03:46:20PM -0300, Thiago Franco Moraes wrote: I fixed some of lintian problems. One of the problems that remains is: W: libsigar: package-installs-python-pyc usr/lib/python2.6/dist-packages/sigar.pyc N: N:Compiled python source files should not be included in

Help with autoconf / libtool

2010-07-07 Thread Andreas Tille
Hi, I would like to seek some help with libtool / autoconf for a small package I would like to put into Debian Med. Upstream has written a small library to interact with the German Gesundheitskarte and I tried to provide the libtool stuff to enable architecture independent building of static and

Re: Help with autoconf / libtool

2010-07-09 Thread Andreas Tille
On Thu, Jul 08, 2010 at 10:16:35AM +0200, Sebastian Harl wrote: and @GENERIC_LIBRARY_VERSION@ is not a standard name, but rather something the other projects that use it have defined in their configure.ac (and I'd hardcode it in the Makefile.am). Yep. In this case, that's already defined

Help for watch file

2010-07-09 Thread Andreas Tille
Hi, I wonder how I might get a watch file for code.google.com working. For FreeDiams I tried version=3 http://code.google.com/p/freemedforms/downloads/list \ http://freemedforms.googlecode.com/files/freediams_([.\d]+).*\.tar\.gz but uscan does not find any matching entry - probably because

Re: Help for watch file

2010-07-09 Thread Andreas Tille
On Fri, Jul 09, 2010 at 06:10:16PM +1000, Aníbal Monsalve Salazar wrote: I just did it for irqbalance. cat debian/watch version=3 http://code.google.com/p/irqbalance/downloads/list \ .*irqbalance-([\d\.]+).tbz2.* According to this example this works ersion=3

Re: Help for watch file

2010-07-09 Thread Andreas Tille
On Fri, Jul 09, 2010 at 04:13:55PM +0800, Paul Wise wrote: You'll need a downloadurlmangle too: version=3 opts=downloadurlmangle=s_^.*name=([^]*).*_http://freemedforms.googlecode.com/files/$1_ \ http://code.google.com/p/freemedforms/downloads/list \

Re: Help for watch file

2010-07-10 Thread Andreas Tille
On Fri, Jul 09, 2010 at 05:28:57PM +0200, Christian Kastner wrote: version=3 opts=\ downloadurlmangle=s|.*[?]name=(.*?).*|http://freemedforms.googlecode.com/files/$1|,\ filenamemangle=s|[^/]+[?]name=(.*?).*|$1| \

Re: Help for watch file

2010-07-14 Thread Andreas Tille
On Wed, Jul 14, 2010 at 09:53:20AM +0800, Paul Wise wrote: 16 packages use it, there should be none. May I ask why ? It should be pretty obvious: less work for Debian and others: less work for ... ... But more work for package maintainers because these redirectors are quite useful to

Re: Help for watch file

2010-07-14 Thread Andreas Tille
On Wed, Jul 14, 2010 at 09:31:26AM +0200, David Paleino wrote: If Google changes again, I find it better to change code in one place than in tons of debian/watch files. Well, 16 (+1 in NEW queue now ;-)) are not really tons. IMHO the main advantage of redirectors in general (or equivalently a

Re: Help me find a project to join!

2010-07-21 Thread Andreas Tille
Hi Henrik, thanks for your interest in Debian and your attempt to help. In addition to the other responses I might have some hint for you. Your introduction sounded like you are interested in sciences and so the Debian Science Blend might be an interesting home for you. You might like to lurk

Re: RFS: bambam

2010-08-03 Thread Andreas Tille
On Tue, Aug 03, 2010 at 12:13:55PM -0400, Paul Wise wrote: On Tue, Aug 3, 2010 at 11:50 AM, Taylor LeMasurier-Wren I am looking for a sponsor for my package bambam. ...   Section         : games You might want to join the Debian Games Team, we would appreciate more members, especially if

What is the role of system user bin?

2010-08-30 Thread Andreas Tille
Hi, the Debian Med team tries to support the pacakging of a hostpital management system which is based on the Mumps implementation GT.M. The actual maintainer wants to use the system user bin as owner of the installed files[1]. I personally have no idea for what purpose this system user was

Re: RFS: rss2email (updated package)

2010-12-06 Thread Andreas Tille
On Mon, Dec 06, 2010 at 06:30:50PM +0100, Etienne Millon wrote: Have you contacted the MIA team[1]? No, I didn't, as I pinged him only four days ago. I don't know if it's enough ? There is no real limit for enough but the fact that Vcs vanished does IMHO give a sign that you probably can

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