Re: [Debian-med-packaging] Help to run test suite for python-pysam needed (does not find libhts)

2014-09-26 Thread Gert Wollny
Hi Andreas, I can confirm that this problem doesn't show up in an up-to-date sid. Cython has a new version there as compared to todays testing, but installing this new version in testing didn't resolve the problem. Anyway, the other question was about the missing symbol faidx_fetch_nseq in hts

Re: [Debian-med-packaging] Help to run test suite for python-pysam needed (does not find libhts)

2014-09-25 Thread Andreas Tille
Hi Gert, On Thu, Sep 25, 2014 at 06:13:19PM +0200, Gert Wollny wrote: > I got this: > > Traceback (most recent call last): > File "tests/pysam_test.py", line 15, in > from TestUtils import checkBinaryEqual > ImportError: No module named TestUtils > > and I saw that you had this too befor

Re: [Debian-med-packaging] Help to run test suite for python-pysam needed (does not find libhts)

2014-09-25 Thread Gert Wollny
Hi Andreas, I got this: Traceback (most recent call last): File "tests/pysam_test.py", line 15, in from TestUtils import checkBinaryEqual ImportError: No module named TestUtils and I saw that you had this too before [1], but the answer was missing. How did you solve this? Would the sol

Re: [Debian-med-packaging] Help to run test suite for python-pysam needed (does not find libhts)

2014-09-25 Thread Andreas Tille
Ups, sorry, done. Andreas. On Thu, Sep 25, 2014 at 03:32:49PM +0200, Gert Wollny wrote: > Hi Andreas, > > > I tried to have a look, but ... > > > On Thu, 2014-09-25 at 14:48 +0200, Andreas Tille wrote: > > [1] git://git.debian.org/git/debian-med/python-pysam.git > > > Could you "git push -

Re: [Debian-med-packaging] Help to run test suite for python-pysam needed (does not find libhts)

2014-09-25 Thread Gert Wollny
Hi Andreas, I tried to have a look, but ... On Thu, 2014-09-25 at 14:48 +0200, Andreas Tille wrote: > [1] git://git.debian.org/git/debian-med/python-pysam.git > Could you "git push --all --tags", because git doesn't have the upstream/0.8.0 version tagged. best Gert signature.asc Desc