Re: [Help] graphlan: Python2 removal in sid/bullseye

2019-11-08 Thread Scott Talbert 

On Fri, 8 Nov 2019, Andreas Tille wrote:


Hi,

I started an attempt to port graphlan to Python3 in Git[1] but its
autopkgtest throws errors:



Running test script ./IBD_biogeography/run.sh .
Traceback (most recent call last):
 File "/usr/bin/graphlan_annotate", line 26, in 
   from src.graphlan_lib import CircTree as CTree
 File "/usr/share/graphlan/src/graphlan_lib.py", line 99, in 
   legal_options = 
set(zip(*clade_attr+ext_attr+int_attr+structural_attr+global_graphical_attr+branch_attr+leg_attr)[0])
 | set(['class'])
TypeError: 'zip' object is not subscriptable
Traceback (most recent call last):
 File "/usr/bin/graphlan", line 29, in 
   from src.graphlan_lib import CircTree as CTree
 File "/usr/share/graphlan/src/graphlan_lib.py", line 99, in 
   legal_options = 
set(zip(*clade_attr+ext_attr+int_attr+structural_attr+global_graphical_attr+branch_attr+leg_attr)[0])
 | set(['class'])
TypeError: 'zip' object is not subscriptable


Try converting the zip(x) to list(zip(x)).

See: 
https://stackoverflow.com/questions/27431390/typeerror-zip-object-is-not-subscriptable/27431433


Scott

[Help] graphlan: Python2 removal in sid/bullseye

2019-11-08 Thread Andreas Tille 
Hi,

I started an attempt to port graphlan to Python3 in Git[1] but its
autopkgtest throws errors:



Running test script ./IBD_biogeography/run.sh .
Traceback (most recent call last):
  File "/usr/bin/graphlan_annotate", line 26, in 
from src.graphlan_lib import CircTree as CTree
  File "/usr/share/graphlan/src/graphlan_lib.py", line 99, in 
legal_options = 
set(zip(*clade_attr+ext_attr+int_attr+structural_attr+global_graphical_attr+branch_attr+leg_attr)[0])
 | set(['class'])
TypeError: 'zip' object is not subscriptable
Traceback (most recent call last):
  File "/usr/bin/graphlan", line 29, in 
from src.graphlan_lib import CircTree as CTree
  File "/usr/share/graphlan/src/graphlan_lib.py", line 99, in 
legal_options = 
set(zip(*clade_attr+ext_attr+int_attr+structural_attr+global_graphical_attr+branch_attr+leg_attr)[0])
 | set(['class'])
TypeError: 'zip' object is not subscriptable



Any hint how to fix this?

Kind regards

   Andreas.


[1] https://salsa.debian.org/med-team/graphlan

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