Re: kmer: Python2 removal in sid/bullseye

2019-12-19 Thread Andreas Tille
Hi Scott, thanks a lot for your hint. On Thu, Dec 19, 2019 at 01:34:08PM -0500, Scott Talbert wrote: > > The 'file' class doesn't exist anymore in Python 3. You'll have to rewrite > myfile to not use it. OK, I simply went with ... @@ -608,6 +608,11 @@ Last-Update: Thu, 19 Dec 2019 10:43:09

Re: kmer: Python2 removal in sid/bullseye

2019-12-19 Thread Scott Talbert
On Thu, 19 Dec 2019, Andreas Tille wrote: Traceback (most recent call last): File "/usr/bin/../lib/atac/bin/AtacDriver.py", line 18, in import MyFile File "/usr/lib/atac/lib/MyFile.py", line 6, in class myfile(file): NameError: name 'file' is not defined

Re: kmer: Python2 removal in sid/bullseye

2019-12-19 Thread Andreas Tille
Control: tags -1 help Hi, I tried to convert kmer to Python3 in Git[1]. Unfortunately I'm stumbling upon an issue in the test suite: ... python3 /usr/bin/../lib/atac/bin/AtacDriver.py /tmp/atac-test.doxZJ4/results/work/LeprvsTuber.matches.extended Traceback (most recent call last): File