Processed: Re: Bug#895193: transition: openmpi
Processing control commands: > tags -1 confirmed Bug #895193 [release.debian.org] transition: openmpi Added tag(s) confirmed. -- 895193: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=895193 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
Bug#895193: transition: openmpi
Control: tags -1 confirmed On 11/04/18 11:12, Alastair McKinstry wrote: > > > On 11/04/2018 10:07, John Paul Adrian Glaubitz wrote: >> On 04/11/2018 10:53 AM, Alastair McKinstry wrote: >>> As of 3.0.1, openmpi now works on Big-Endian powerpc (which was to be a >>> problem; it had been dropped upstream because of an unknown bug, now >>> fixed). >> >> Oh, really, they fixed that? I already had given up hopes and >> therefore ignored >> the thread on github out of frustration. >> >>From the thread (and related PRs it references) its fixed and works as > long as -O3 is used. > I've implemented and tested this in ./rules. > >>> The other non-release archs were failing due to missing dependencies: in >>> particular java support (not used by any package in stable/testing) and >>> pmix (new; not used in testing/stable; pmix enables scaling to ~100,000+ >>> nodes, which is unlikely to be needed). >> >> I am working on fixing the remaining OpenJDK issues. I'm an upstream >> committer in the OpenJDK project, so I can commit all changes myself. >> > Ok. I've just disabled support as necessary for archs with openjdk issues. > While a riscv64 build has not yet occurred (awaiting in queue to see), > all issues on all other archs should now be resolved, > making the transition possible. Great. Please go ahead. Cheers, Emilio
Bug#895193: transition: openmpi
On 11/04/2018 10:07, John Paul Adrian Glaubitz wrote: > On 04/11/2018 10:53 AM, Alastair McKinstry wrote: >> As of 3.0.1, openmpi now works on Big-Endian powerpc (which was to be a >> problem; it had been dropped upstream because of an unknown bug, now >> fixed). > > Oh, really, they fixed that? I already had given up hopes and > therefore ignored > the thread on github out of frustration. > >From the thread (and related PRs it references) its fixed and works as long as -O3 is used. I've implemented and tested this in ./rules. >> The other non-release archs were failing due to missing dependencies: in >> particular java support (not used by any package in stable/testing) and >> pmix (new; not used in testing/stable; pmix enables scaling to ~100,000+ >> nodes, which is unlikely to be needed). > > I am working on fixing the remaining OpenJDK issues. I'm an upstream > committer in the OpenJDK project, so I can commit all changes myself. > Ok. I've just disabled support as necessary for archs with openjdk issues. While a riscv64 build has not yet occurred (awaiting in queue to see), all issues on all other archs should now be resolved, making the transition possible. >> So, the expected changes to mpi-defaults will no longer be needed. > Yay, thanks so much for this! > > Adrian > -- Alastair McKinstry, , , https://diaspora.sceal.ie/u/amckinstry Misentropy: doubting that the Universe is becoming more disordered.
Bug#895193: transition: openmpi
On 04/11/2018 10:53 AM, Alastair McKinstry wrote: As of 3.0.1, openmpi now works on Big-Endian powerpc (which was to be a problem; it had been dropped upstream because of an unknown bug, now fixed). Oh, really, they fixed that? I already had given up hopes and therefore ignored the thread on github out of frustration. The other non-release archs were failing due to missing dependencies: in particular java support (not used by any package in stable/testing) and pmix (new; not used in testing/stable; pmix enables scaling to ~100,000+ nodes, which is unlikely to be needed). I am working on fixing the remaining OpenJDK issues. I'm an upstream committer in the OpenJDK project, so I can commit all changes myself. So, the expected changes to mpi-defaults will no longer be needed. Yay, thanks so much for this! Adrian -- .''`. John Paul Adrian Glaubitz : :' : Debian Developer - glaub...@debian.org `. `' Freie Universitaet Berlin - glaub...@physik.fu-berlin.de `-GPG: 62FF 8A75 84E0 2956 9546 0006 7426 3B37 F5B5 F913
Bug#895193: transition: openmpi
As of 3.0.1, openmpi now works on Big-Endian powerpc (which was to be a problem; it had been dropped upstream because of an unknown bug, now fixed). The other non-release archs were failing due to missing dependencies: in particular java support (not used by any package in stable/testing) and pmix (new; not used in testing/stable; pmix enables scaling to ~100,000+ nodes, which is unlikely to be needed). So, the expected changes to mpi-defaults will no longer be needed. On 08/04/2018 10:28, Mattia Rizzolo wrote: > On Sun, Apr 08, 2018 at 10:03:23AM +0100, Alastair McKinstry wrote: >> Now with openmpi 3.0.1 in the archive, we can start transtion the existing >> packages to the archive so that the new openmpi package can transition to >> testing. The following source packages need to be rebuilt: > But the new openmpi builds in *a lot* fewer architectures than the > current one (talking about ports here). > > If you don't plan on having openmpi fixed on all those architectures, > please coordinate with debian-ports to: > 1) switch mpi-defaults there and update the available archs > 2) do the transition there (see https://bugs.debian.org/814936 and the >README.source I committed to git after the last release) > -- Alastair McKinstry, , , https://diaspora.sceal.ie/u/amckinstry Misentropy: doubting that the Universe is becoming more disordered. signature.asc Description: OpenPGP digital signature
Bug#895193: transition: openmpi
On Sun, Apr 08, 2018 at 10:03:23AM +0100, Alastair McKinstry wrote: > Now with openmpi 3.0.1 in the archive, we can start transtion the existing > packages to the archive so that the new openmpi package can transition to > testing. The following source packages need to be rebuilt: But the new openmpi builds in *a lot* fewer architectures than the current one (talking about ports here). If you don't plan on having openmpi fixed on all those architectures, please coordinate with debian-ports to: 1) switch mpi-defaults there and update the available archs 2) do the transition there (see https://bugs.debian.org/814936 and the README.source I committed to git after the last release) -- regards, Mattia Rizzolo GPG Key: 66AE 2B4A FCCF 3F52 DA18 4D18 4B04 3FCD B944 4540 .''`. more about me: https://mapreri.org : :' : Launchpad user: https://launchpad.net/~mapreri `. `'` Debian QA page: https://qa.debian.org/developer.php?login=mattia `- signature.asc Description: PGP signature
Bug#895193: transition: openmpi
Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: transition (please explain about the transition: impacted packages, reason, ... for more info see: https://wiki.debian.org/Teams/ReleaseTeam/Transitions) Now with openmpi 3.0.1 in the archive, we can start transtion the existing packages to the archive so that the new openmpi package can transition to testing. The following source packages need to be rebuilt: aces3 adios apbs armci-mpi arpack asl autodock-vina blacs-mpi boost1.62 boost1.63 calculix-ccx camitk cctools choreonoid ckon code-saturne coin3 coinor-ipopt cp2k csound deal.ii dnsdist dolfin dpuser dune-common dune-functions dune-geometry dune-grid dune-grid-glue dune-istl dune-localfunctions dune-pdelab dune-typetree dune-uggrid elkcode elpa espresso esys-particle eztrace fftw fftw3 flann flightcrew freefem++ freeorion fw4spl ga gammaray gdcm gerris getdp getfem++ gfsview ghemical ginkgocadx gmsh gpaw gpsshogi gretl gtg-trace gyoto hdf-eos5 hdf5 hpcc hyphy hypre ifrit iqtree itksnap kido lammps libghemical libgpiv libosl liggghts litecoin lizardfs luabind magics++ mathgl med-fichier meep-mpi-default mia molds mpb mpgrafic mpi4py mpqc mpqc3 mrbayes mrmpi mumps ncl neuron nifti2dicom nwchem oasis3 octave-mpi odb-api odin open-coarrays opencv openfoam openmx orthanc orthanc-dicomweb orthanc-postgresql orthanc-webviewer orthanc-wsi otf p4est palabos paraview pcl pdns-recursor performous petsc petsc4py pnetcdf prime-phylo pysph python-casmoothing quickfix r-cran-readr ray regina-normal rheolef rmpi roboptim-core ros-pcl-conversions ruby-mpi scalapack scilab scotch scram sdpa sfcgal silo-llnl slepc slepc4py slic3r slic3r-prusa spooles spring springlobby starpu subcommander sundials superlu-dist synfig syrthes tachyon tessa therion tiledarray trilinos ui-gxmlcpp ui-utilcpp valgrind vtk-dicom vtk6 woo xdmf xmds2 yade zypper During a rebuild, there were no build failures due to openmpi changes. The following packages failed on pre-existing FTBFS: nwchem tiledarray Ben file: title = "openmpi"; is_affected = .depends ~ "libopenmpi2" | .depends ~ "libopenmpi3"; is_good = .depends ~ "libopenmpi3"; is_bad = .depends ~ "libopenmpi2"; Thanks Alastair McKinstry -- System Information: Debian Release: 9.4 APT prefers stable-updates APT policy: (500, 'stable-updates'), (500, 'stable') Architecture: i386 (i686) Kernel: Linux 4.9.0-6-686-pae (SMP w/1 CPU core) Locale: LANG=en_IE.UTF-8, LC_CTYPE=en_IE.UTF-8 (charmap=UTF-8) (ignored: LC_ALL set to en_IE.UTF-8), LANGUAGE=en_IE.UTF-8 (charmap=UTF-8) (ignored: LC_ALL set to en_IE.UTF-8) Shell: /bin/sh linked to /bin/dash Init: systemd (via /run/systemd/system)
