Re: publication quality graphs

2005-10-13 Thread Teemu Ikonen
On 10/13/05, Jamie Rollins [EMAIL PROTECTED] wrote: Thanks for the overview, Stuart. Very useful. However, I am not having any luck finding many of the packages you mention in etch; xmggrace, qtiplot, and pyx in particular don't turn up on a cursory search of packages in etch. Are they

Re: BALLView - a molecular viewer and modeling tool

2007-01-28 Thread Teemu Ikonen
On 1/28/07, Andreas [EMAIL PROTECTED] wrote: I have still one problem: Recognizing the PowerPC architecture. Currently the corresponding section in our configuration files looks like: PROCESSOR=`${UNAME} -m` if test `echo $PROCESSOR|${CUT} -c3` = ppc ; then ARCHITECTURE=ppc32

Meshlab and Qutemol

2007-04-24 Thread Teemu Ikonen
Hi all, I was looking for free software to work with STL-files [1] used in rapid prototyping and found Meshlab [2], which is pretty nice, at least for viewing and converting meshes from one format to another (BTW if someone knows of a free software 3D CAD program, please let me know). [1]

Re: libNeXus mostly packaged

2007-05-22 Thread Teemu Ikonen
On 5/22/07, Rudi Cilibrasi, Ph.D. [EMAIL PROTECTED] wrote: Therefore, I suggest that one of the two nexus file format libraries undergo a renaming. I would also like to offer up my packages for adoption by somebody who would actually know how to test them better than I would. I have my

Re: Meshlab and Qutemol

2007-06-03 Thread Teemu Ikonen
On 4/24/07, Andreas Tille [EMAIL PROTECTED] wrote: On Tue, 24 Apr 2007, Teemu Ikonen wrote: I could go on and package Meshlab with a static copy of VCG included, but if there's someone with suitable hardware, time and interest to package Qutemol, then maybe VCG should be in a separate package

Re: Bug#426581: meshlab - anyone still working on this

2008-03-17 Thread Teemu Ikonen
On Sat, Mar 8, 2008 at 7:00 PM, Paolo Cignoni [EMAIL PROTECTED] wrote: we are going to release the v1.1.1 of meshlab and i have arranged the source with hopefully all the issues that you have raised. Before releasing officially , could you check that the following sources are ok?

Re: Bug#426581: meshlab - anyone still working on this

2008-04-15 Thread Teemu Ikonen
On Fri, Apr 4, 2008 at 6:21 PM, Teemu Ikonen [EMAIL PROTECTED] wrote: On Fri, Apr 4, 2008 at 4:15 PM, Yaroslav Halchenko [EMAIL PROTECTED] wrote: So what was the outcome? ;-) 1.1.1 upstream is out but ITP is still open. Is help/sponsoring needed? Ok, I updated the package to 1.1.1

Re: Bug#464400: opencascade packages

2008-04-21 Thread Teemu Ikonen
On Mon, Apr 21, 2008 at 5:45 PM, Adam C Powell IV [EMAIL PROTECTED] wrote: The FreeCAD libraries can go into contrib, but the main GPL app cannot -- unless Debian concludes that the OpenCASCADE license is GPL-compatible! At this point, I don't see why they wouldn't, but it's hard to tell.

Re: {debian, pkg}-science repository [Was: Science linguistics and debian-science SVN repository at alioth]

2008-05-09 Thread Teemu Ikonen
On Fri, May 9, 2008 at 1:43 AM, David Bremner [EMAIL PROTECTED] wrote: What do we need minimally to get started? Hi, FWIW, I would also like to support the name 'debian-science' as the name of the project and git as the VCS. I think the easiest way to get things started would be to just

debian-science git repository

2008-05-15 Thread Teemu Ikonen
Hi all, Since the debian-science git repository is now up and running, it's time to populate it with packages. I uploaded the source packages I maintain already (these are meshlab, imview and imview-doc, I'm also thinking of moving rasmol from collab-maint). There are certainly more than one way

Re: Which mailing list for maintainer field?

2008-05-23 Thread Teemu Ikonen
On Fri, May 23, 2008 at 4:23 PM, Sylvestre Ledru [EMAIL PROTECTED] wrote: I think it is, but we should make a policy of whether using debian-science or debian-science-maintainers http://lists.alioth.debian.org/mailman/listinfo/debian-science-maintainers for the maintainer field. Manuel and I

Re: OpenCASCADE ACCEPTED!

2008-06-09 Thread Teemu Ikonen
On Mon, Jun 9, 2008 at 10:45 PM, Adam C Powell IV [EMAIL PROTECTED] wrote: And after three weeks in the NEW queue, OpenCASCADE was ACCEPTED this morning into unstable! Yay! [...] If anyone else has an application which uses OpenCASCADE, please help to test the package so it will be as robust

Re: offline mail writing (was Re: Debtags for science)

2008-09-07 Thread Teemu Ikonen
On Sat, Sep 6, 2008 at 9:25 PM, Thorsten Glaser [EMAIL PROTECTED] wrote: Enrico Zini dixit: [damn! I postponed this since I wrote it on a bus, but then I forgot to send it] [...] I use the following setup: * /etc/mail/sendmail.cf is pretty straightforward, although I do use a smarthost:

Bug#514903: ITP: pymca -- Python toolkit and application for X-ray fluorescence analysis

2009-02-11 Thread Teemu Ikonen
Package: wnpp Severity: wishlist Owner: Teemu Ikonen tpiko...@gmail.com * Package name: pymca Version : 4.3.0 Upstream Author : V. Armando Sole s...@esrf.fr * URL : http://pymca.sourceforge.net/ * License : GPL-2+ Programming Lang: Python, C Description

Re: Bug#514903: ITP: pymca -- Python toolkit and application for X-ray fluorescence analysis

2009-02-16 Thread Teemu Ikonen
On Wed, Feb 11, 2009 at 7:56 PM, Teemu Ikonen tpiko...@gmail.com wrote: PyMCA is an application and Python toolkit for analysis of X-ray fluorescence spectra. ... Prelimary packages will be soon at the Debian Science repository at git.debian.org. Hi all, The PyMCA package is now at http

Re: Bug#505224: RFP: freecad -- An extensible CAx program (alpha)

2009-02-18 Thread Teemu Ikonen
On Tue, Feb 17, 2009 at 9:18 PM, Denis Barbier bou...@gmail.com wrote: On 2009/2/10, Adam C Powell IV wrote: [...] Robert, I owe you an answer on why the OCTPL is GPL-incompatible. IANAL, TINLA, TINASOTODP, etc. but here goes: * 4. para 4: If you distribute or sublicense the Software (as

Re: [Pythonocc-users] OCC Licence

2009-03-11 Thread Teemu Ikonen
On Wed, Mar 11, 2009 at 5:08 PM, Bryan Bishop kanz...@gmail.com wrote: I also recall some recent revised interest in OpenCASCADE from d-s. I'll cc the debian-science team and ask what's been up. :-) Maybe there's already some new packages? Opencascade 6.3 hit Debian main three days ago, so

Re: Bug seems to be fixed for a long time but no upload

2009-03-31 Thread Teemu Ikonen
On Tue, Mar 31, 2009 at 9:59 AM, Andreas Tille til...@rki.de wrote: when checking out the rasmol git repository[1]  I noticed that the changelog says: [...] Infortunately the package was not yet uploaded and I wonder what the reasons might be to not fix an iportant bug neither leave any notice

3rd party sources in packages (was: Problems with packaging qtiplot)

2009-05-14 Thread Teemu Ikonen
On Thu, May 14, 2009 at 9:32 AM, Gudjon I. Gudjonsson gud...@gudjon.org wrote:    I am wondering if the debian-science list can help me with a problem I do have with one of my packages, qtiplot. It is unfortunately terribly outdated, partly because of lack of time and partly because of

pymca needs a sponsor

2009-06-01 Thread Teemu Ikonen
On Mon, Feb 16, 2009 at 5:01 PM, Teemu Ikonen tpiko...@gmail.com wrote: The PyMCA package is now at http://git.debian.org/?p=debian-science/packages/pymca.git and at http://mentors.debian.net/debian/pool/main/p/pymca/ Hi all, The PyMCA package (ITP #514903) has not attracted sponsors

Re: Bug#426581: RFS: Meshlab

2009-06-12 Thread Teemu Ikonen
On Fri, Jun 12, 2009 at 3:46 AM, Dmitrijs Ledkovs dmitrij.led...@gmail.com wrote: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=426581 Above is RFS for meshlab. Is anyone looking into sponsoring it? Can't wait to apt-get install it. Hi Dima, Your wish is (hopefully) soon fulfilled.

Bug#536270: ITP: boost-numeric-bindings -- Numeric Library Bindings for Boost

2009-07-08 Thread Teemu Ikonen
Package: wnpp Severity: wishlist Owner: Teemu Ikonen tpiko...@gmail.com * Package name: boost-numeric-bindings Version : 20081116 Upstream Author : Kresimir Fresl et. al. * URL : http://mathema.tician.de/software/boost-bindings https://svn.boost.org/trac/boost

simple batch queue system?

2009-07-22 Thread Teemu Ikonen
Hi Debian scientists, I'm in the market for a simple job scheduler for a set of work nodes in the 'cloud' (i.e. EC2). A queue for submitted non-parallel jobs, commands to insert and delete jobs, and simple first-come, first served scheduling is what I'm looking for. Starting and stopping node

Re: simple batch queue system?

2009-07-23 Thread Teemu Ikonen
On Wed, Jul 22, 2009 at 9:27 PM, Dirk Eddelbuettele...@debian.org wrote: On 22 July 2009 at 16:32, Lucas Nussbaum wrote: | On 22/07/09 at 12:30 +0200, Teemu Ikonen wrote: | I'm in the market for a simple job scheduler for a set of work nodes [...] | OAR http://oar.imag.fr. Not packaged

Re: post-inst message for autodock

2009-07-29 Thread Teemu Ikonen
On Wed, Jul 29, 2009 at 3:12 PM, Michael Banckmba...@debian.org wrote: (CCing -science because I think this applies to all fields of science and should see wider discussion) For -science, the issue is about user registration (usually before download, or on program startup) which is an

Bug#550849: RFP: neartree -- function library efficiently solving the Nearest Neighbor Problem

2009-10-13 Thread Teemu Ikonen
Package: wnpp Severity: wishlist * Package name: neartree Version : 2.1.3 Upstream Author : Larry Andrews * URL : http://sourceforge.net/projects/neartree/ * License : LGPL Programming Lang: C, C++ Description : function library efficiently solving the

Bug#550852: RFP: cvector -- ANSI C implementation of dynamic arrays approximating the C++ vector class

2009-10-13 Thread Teemu Ikonen
Package: wnpp Severity: wishlist * Package name: cvector Version : 1.0.3 Upstream Author : Herbert J. Bernstein * URL : http://sourceforge.net/projects/cvector/ * License : LGPL Programming Lang: C Description : ANSI C implementation of dynamic arrays

Reproducibility

2010-04-30 Thread Teemu Ikonen
On Fri, Apr 30, 2010 at 2:08 AM, Michael Hanke michael.ha...@gmail.com wrote: Debian: The ultimate platform for neuroimaging research [...] However, it is hard to blame the respective developers, because the sheer number of existing combinations of operating systems, hardware, and library

NASA CDF

2010-12-10 Thread Teemu Ikonen
Hello, I ran into a data-file which is a CDF V2 Document, No summary info, according to /usr/bin/file. To my surprise there seems to be nothing in Debian which supports this format. The canonical CDF library appears to live at http://cdf.gsfc.nasa.gov/ and has a license (

Re: NASA CDF

2010-12-12 Thread Teemu Ikonen
On Sat, Dec 11, 2010 at 1:45 PM, Bernhard R. Link brl...@debian.org wrote: * Aaron M. Ucko a...@alum.mit.edu [101210 20:36]: The conclusion I draw from the threads above is that the license above is DFSG-free. I agree with you, but also with those who observed that the notion of a federal

RFP: cdf -- NASA Common Data Format library and tools

2010-12-13 Thread Teemu Ikonen
Package: wnpp Severity: wishlist * Package name: cdf Version : 3.3.0 Upstream Author : Space Physics Data Facility cdfsupp...@listserv.gsfc.nasa.gov * URL : http://cdf.gsfc.nasa.gov/ * License : http://cdf.gsfc.nasa.gov/html/CDF_copyright.html (See also

Sponsoring needed for Pymca (Was: Bug#625171: pymca: FTBFS: rm: cannot remove `debian/pymca/usr/lib/python2.5/site-packages/PyMca/*.dat': No such file or directory)

2011-05-24 Thread Teemu Ikonen
Hello Hideki, Thanks for the patch. Actually I just made an upload to mentors.d.o containing a fix almost exactly like your patch. The fix is somewhat suboptimal, but will have to do for now. The sources of the new version are here: http://mentors.debian.net/debian/pool/main/p/pymca/ Since

Re: Bug#629628: RFP: u3d -- library for producing U3D files

2011-06-08 Thread Teemu Ikonen
merge 629628 581854 thanks On Wed, Jun 8, 2011 at 10:51 AM, Salvatore Bonaccorso car...@debian.org wrote: Package: wnpp Severity: wishlist * Package name    : u3d  Version         : 1.4.2  Upstream Author : Alexey Balakin mathgl.abala...@gmail.com * URL             :

Re: pdb files license

2011-09-26 Thread Teemu Ikonen
2011/9/26 Picca Frédéric-Emmanuel frederic-emmanuel.pi...@synchrotron-soleil.fr: so for you the .pdb files are DFSGfree ? There have been PDB-files from the Protein Data Bank in the Debian archive since at least 1998 (rasmol source package), so including them should not be a problem in practice.

Re: pdb files license

2011-10-04 Thread Teemu Ikonen
On Mon, Oct 3, 2011 at 10:51 PM, Don Armstrong d...@debian.org wrote: On Mon, 26 Sep 2011, Picca Frédéric-Emmanuel wrote: is it possible for Debian to distribut that kind of files ? Generally speaking, PDB files are not a work of authorship, therefore they do not qualify for copyright

RFS: Rasmol and Neartree

2012-01-06 Thread Teemu Ikonen
Hi, New versions of Rasmol and Neartree need an upload. The sources are in the debian science git repository and at mentors.debian.net: Neartree: http://mentors.debian.net/debian/pool/main/n/neartree/neartree_3.1.1-1.dsc Rasmol:

Re: Debian-Linux ally of workstations

2013-05-02 Thread Teemu Ikonen
On Wed, May 1, 2013 at 8:38 AM, Francesco Pietra chiendar...@gmail.comwrote: I was looking for some sort of i-device that could allow whifi, directed to reading-downloading literature and be capable of talking - via ssh/scp - with my workstations on a local network (not necessarily wireless).

RFS: openctm

2013-09-17 Thread Teemu Ikonen
retitle 699854 ITP: openctm -- Open Compressed Triangle Mesh file format thanks I just uploaded openctm packages to the Debian Science git repo at http://anonscm.debian.org/gitweb/?p=debian-science/packages/openctm.git and mentors.d.o:

RFP: levmar -- Levenberg-Marquardt nonlinear least squares algorithms in C/C++

2013-10-07 Thread Teemu Ikonen
Using the amazing http://codesearch.debian.net one finds that levmar is included in rather many source packages in Debian: freemat: levmar-2.3 hugin: some older version, probably patched meshlab: levmar-2.3 sextractor: levmar-2.3 starlink-ast: parts of some older version from 2004 stimfit:

RFS: imview

2018-04-26 Thread Teemu Ikonen
Hello, I updated the imview package to the latest upstream version and reorganized the rather large collecion of patches it has acquired. The new version is on salsa at https://salsa.debian.org/science-team/imview Please check and upload. Best, Teemu

RFS and uploader: openctm

2018-03-24 Thread Teemu Ikonen
Hi, I'm looking for a sponsor to upload a minor revision to the openctm package. The latest changes are in salsa at https://salsa.debian.org/science-team/openctm/ Since these changes were prompted by a mail from the MIA team, I would also like give up this package and find someone else for the

Re: RFS: cbflib, cqrlib, cvector

2018-10-22 Thread Teemu Ikonen
7:04PM -, Teemu Ikonen wrote: > > Hi, > > > > I've prepared new (upstream) versions of cbflib, cqrlib and > > cvector. They are all shared libraries with rasmol as the only > > reverse dependency. > > > > cqrlib and cvector are simple updates, but

RFS: cbflib, cqrlib, cvector

2018-10-19 Thread Teemu Ikonen
Hi, I've prepared new (upstream) versions of cbflib, cqrlib and cvector. They are all shared libraries with rasmol as the only reverse dependency. cqrlib and cvector are simple updates, but cbflib required more extensive changes to upstream Makefile. Here are the URLs to salsa:

RFS: rasmol

2018-11-02 Thread Teemu Ikonen
On Fri, Oct 26, 2018 at 06:40:13AM -0000, Teemu Ikonen wrote: > > Hi, > > > > New libcvector-dev is now in the archive, so I'm requesting > > sponsoring for a new (upstream) version of neartree, at > > > > https://salsa.debian.org/science-team/neartree &g

RFS: neartree

2018-10-26 Thread Teemu Ikonen
Hi, New libcvector-dev is now in the archive, so I'm requesting sponsoring for a new (upstream) version of neartree, at https://salsa.debian.org/science-team/neartree Best, Teemu Teemu Ikonen wrote: > Hi, > > I've prepared new (upstream) versions of cbflib, cqrlib and > cvector.